{"id":"https://openalex.org/W1978235349","doi":"https://doi.org/10.1186/1471-2105-11-s5-o4","title":"Pitfalls in applying text mining to scientific literature","display_name":"Pitfalls in applying text mining to scientific literature","publication_year":2010,"publication_date":"2010-10-01","ids":{"openalex":"https://openalex.org/W1978235349","doi":"https://doi.org/10.1186/1471-2105-11-s5-o4","mag":"1978235349"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-s5-o4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s5-o4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S5-O4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S5-O4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084974662","display_name":"Jean\u2010Marc Neefs","orcid":null},"institutions":[{"id":"https://openalex.org/I137982388","display_name":"Janssen (Belgium)","ror":"https://ror.org/04yzcpd71","country_code":"BE","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I137982388"]},{"id":"https://openalex.org/I4210118116","display_name":"Janssen (United Kingdom)","ror":"https://ror.org/02nw6hx08","country_code":"GB","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210118116"]}],"countries":["BE","GB"],"is_corresponding":true,"raw_author_name":"Jean-Marc Neefs","raw_affiliation_strings":["Janssen Pharmaceutica, 2340 Beerse, Belgium","Janssen Pharmaceutica"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janssen Pharmaceutica, 2340 Beerse, Belgium","institution_ids":["https://openalex.org/I137982388"]},{"raw_affiliation_string":"Janssen Pharmaceutica","institution_ids":["https://openalex.org/I4210118116"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5084974662"],"corresponding_institution_ids":["https://openalex.org/I137982388","https://openalex.org/I4210118116"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":0.5189,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.78023487,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"11","issue":"S5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.33730000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.33730000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5363425612449646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4881008565425873},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.47133684158325195},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46778950095176697},{"id":"https://openalex.org/keywords/scientific-literature","display_name":"Scientific literature","score":0.4209231436252594},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3808979392051697},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27690738439559937},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15763729810714722},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07976758480072021},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07850414514541626}],"concepts":[{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5363425612449646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4881008565425873},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.47133684158325195},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46778950095176697},{"id":"https://openalex.org/C2781083858","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific literature","level":2,"score":0.4209231436252594},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3808979392051697},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27690738439559937},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15763729810714722},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07976758480072021},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07850414514541626},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1471-2105-11-s5-o4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s5-o4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S5-O4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2956391","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2956391","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-s5-o4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s5-o4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S5-O4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8799999952316284,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1978235349.pdf","grobid_xml":"https://content.openalex.org/works/W1978235349.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2118505788","https://openalex.org/W4254166511","https://openalex.org/W2150084125","https://openalex.org/W1542823905","https://openalex.org/W1490878237","https://openalex.org/W2990314835","https://openalex.org/W2059850119","https://openalex.org/W2131319730"],"abstract_inverted_index":{"Numbers":[0],"and":[1,16,38,53,69,82,109,114],"data":[2],"mining":[3,120,131],"are":[4],"easy.":[5],"Our":[6],"numerical":[7],"system":[8],"counts":[9],"10":[10],"digits,":[11],"any":[12],"combination":[13],"is":[14,44,48],"possible,":[15],"every":[17],"measured":[18],"value":[19],"can":[20,30,41,58],"be":[21,31,42,59],"captured":[22],"in":[23,61,67,133],"a":[24,124,128],"number.":[25],"Large":[26],"quantities":[27],"of":[28,51,55,65,118,127],"measures":[29],"analysed":[32],"efficiently":[33],"using":[34],"incredibly":[35],"powerful":[36],"calculators,":[37],"resulting":[39],"information":[40],"shown":[43],"simple":[45],"clear":[46],"graphs.\r\n\r\nText":[47],"hard.":[49],"Hundreds":[50],"letters":[52],"millions":[54],"different":[56,89,100],"combinations":[57],"used":[60],"the":[62,84,119],"personal":[63],"interpretation":[64],"information,":[66,90,104,113],"words":[68],"phrases":[70],"that":[71,112],"reflect":[72],"one's":[73],"personality":[74],"rather":[75],"than":[76],"objective":[77],"measurements.":[78],"Depending":[79],"on":[80],"context":[81],"language,":[83],"same":[85],"expression":[86],"carries":[87],"totally":[88],"or":[91],"no":[92],"meaning":[93],"at":[94,99],"all.\r\n\r\nText":[95],"Mining":[96],"requires":[97],"'education'":[98],"levels:":[101],"for":[102],"providing":[103],"to":[105,107,110,115],"capture,":[106],"store":[108],"retrieve":[111],"interpret":[116],"results":[117],"process.\r\n\r\nI":[121],"will":[122],"provide":[123],"few":[125,129],"examples":[126],"text":[130],"tools":[132],"daily":[134],"practice.":[135]},"counts_by_year":[],"updated_date":"2026-09-06T09:10:53.072986","created_date":"2025-10-10T00:00:00"}
