{"id":"https://openalex.org/W2047221627","doi":"https://doi.org/10.1186/1471-2105-11-s4-p9","title":"Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster","display_name":"Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster","publication_year":2010,"publication_date":"2010-07-01","ids":{"openalex":"https://openalex.org/W2047221627","doi":"https://doi.org/10.1186/1471-2105-11-s4-p9","mag":"2047221627"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-s4-p9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-p9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-P9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-P9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013578015","display_name":"Daniel R. Harris","orcid":"https://orcid.org/0000-0001-9139-3433"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Harris","raw_affiliation_strings":["Department of Computer Science, University of Kentucky, Lexington, KY, 40506, USA","Department of Computer Science, University of Kentucky Lexington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Kentucky, Lexington, KY, 40506, USA","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Department of Computer Science, University of Kentucky Lexington, USA","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058294332","display_name":"Jerzy W. Jaromczyk","orcid":"https://orcid.org/0000-0003-1427-4072"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jerzy W Jaromczyk","raw_affiliation_strings":["Department of Computer Science, University of Kentucky, Lexington, KY, 40506, USA","Department of Computer Science, University of Kentucky Lexington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Kentucky, Lexington, KY, 40506, USA","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Department of Computer Science, University of Kentucky Lexington, USA","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068105637","display_name":"Christopher L. Schardl","orcid":"https://orcid.org/0000-0003-2197-0842"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher L Schardl","raw_affiliation_strings":["Department of Plant Pathology, University of Kentucky, Lexington, KY, 40506, USA","Department of Plant Pathology, University of Kentucky, Lexington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, University of Kentucky, Lexington, KY, 40506, USA","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Department of Plant Pathology, University of Kentucky, Lexington, USA","institution_ids":["https://openalex.org/I143302722"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5058294332"],"corresponding_institution_ids":["https://openalex.org/I143302722"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2723,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.5922317,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"S4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9222000241279602,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9085999727249146,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7270978689193726},{"id":"https://openalex.org/keywords/ibm","display_name":"IBM","score":0.6837829351425171},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5787178874015808},{"id":"https://openalex.org/keywords/computer-cluster","display_name":"Computer cluster","score":0.5086449384689331},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.41724318265914917},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4153844118118286},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3907437026500702},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37024587392807007},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32107800245285034},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20278987288475037},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11925402283668518}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7270978689193726},{"id":"https://openalex.org/C70388272","wikidata":"https://www.wikidata.org/wiki/Q5968558","display_name":"IBM","level":2,"score":0.6837829351425171},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5787178874015808},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.5086449384689331},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.41724318265914917},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4153844118118286},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3907437026500702},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37024587392807007},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32107800245285034},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20278987288475037},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11925402283668518},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-11-s4-p9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-p9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-P9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:uknowledge.uky.edu:cs_present-1001","is_oa":false,"landing_page_url":"https://uknowledge.uky.edu/cs_present/2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402623","display_name":"UKnowledge (University of Kentucky)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I143302722","host_organization_name":"University of Kentucky","host_organization_lineage":["https://openalex.org/I143302722"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Science Presentations","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3290092","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3290092","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-s4-p9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-p9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-P9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2047221627.pdf","grobid_xml":"https://content.openalex.org/works/W2047221627.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3126131865","https://openalex.org/W2044344400","https://openalex.org/W4253186488","https://openalex.org/W1996938127","https://openalex.org/W2083611981","https://openalex.org/W2043380045","https://openalex.org/W4231814374","https://openalex.org/W2099557065","https://openalex.org/W4239125441","https://openalex.org/W2366626519"],"abstract_inverted_index":{"Figure":[0],"1":[1,6],"CPU-time":[2,11],"and":[3,13,24],"wait-time":[4,15],"composite.Figure":[5],"shows":[7],"the":[8,20],"summation":[9],"of":[10,22],"(blue)":[12],"queue":[14],"(red)":[16],"in":[17],"minutes":[18],"as":[19],"number":[21],"nodes":[23],"database":[25],"segments":[26],"increase.":[27]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
