{"id":"https://openalex.org/W2040611663","doi":"https://doi.org/10.1186/1471-2105-11-s4-p8","title":"In silico analysis of a family of extracellular polysaccharide deacetylases involved in virulence of pathogenic gram-positive cocci","display_name":"In silico analysis of a family of extracellular polysaccharide deacetylases involved in virulence of pathogenic gram-positive cocci","publication_year":2010,"publication_date":"2010-07-01","ids":{"openalex":"https://openalex.org/W2040611663","doi":"https://doi.org/10.1186/1471-2105-11-s4-p8","mag":"2040611663"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-s4-p8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-p8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-P8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-P8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077224913","display_name":"Ramy K. Aziz","orcid":"https://orcid.org/0000-0002-4448-7100"},"institutions":[{"id":"https://openalex.org/I145487455","display_name":"Cairo University","ror":"https://ror.org/03q21mh05","country_code":"EG","type":"education","lineage":["https://openalex.org/I145487455"]}],"countries":["EG"],"is_corresponding":true,"raw_author_name":"Ramy Karam Aziz","raw_affiliation_strings":["Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt","Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt;"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt","institution_ids":["https://openalex.org/I145487455"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt;","institution_ids":["https://openalex.org/I145487455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5077224913"],"corresponding_institution_ids":["https://openalex.org/I145487455"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3161,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57991064,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":"S4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12827","display_name":"Biochemical and Molecular Research","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/peptidoglycan","display_name":"Peptidoglycan","score":0.8635333776473999},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7132900357246399},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.6979053616523743},{"id":"https://openalex.org/keywords/teichoic-acid","display_name":"Teichoic acid","score":0.6057667136192322},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.593978226184845},{"id":"https://openalex.org/keywords/effector","display_name":"Effector","score":0.5830332040786743},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.579587459564209},{"id":"https://openalex.org/keywords/pathogenic-bacteria","display_name":"Pathogenic bacteria","score":0.5579814910888672},{"id":"https://openalex.org/keywords/innate-immune-system","display_name":"Innate immune system","score":0.5447550415992737},{"id":"https://openalex.org/keywords/streptococcus-pyogenes","display_name":"Streptococcus pyogenes","score":0.5079203248023987},{"id":"https://openalex.org/keywords/streptococcus-pneumoniae","display_name":"Streptococcus pneumoniae","score":0.5013515949249268},{"id":"https://openalex.org/keywords/bacterial-cell-structure","display_name":"Bacterial cell structure","score":0.49968767166137695},{"id":"https://openalex.org/keywords/cell-wall","display_name":"Cell wall","score":0.450094997882843},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.4415239095687866},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.3914288878440857},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.19819068908691406},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19112738966941833},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1459200382232666},{"id":"https://openalex.org/keywords/staphylococcus-aureus","display_name":"Staphylococcus aureus","score":0.06505098938941956},{"id":"https://openalex.org/keywords/antibiotics","display_name":"Antibiotics","score":0.0643606185913086}],"concepts":[{"id":"https://openalex.org/C2776634448","wikidata":"https://www.wikidata.org/wiki/Q206920","display_name":"Peptidoglycan","level":3,"score":0.8635333776473999},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7132900357246399},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.6979053616523743},{"id":"https://openalex.org/C2778253522","wikidata":"https://www.wikidata.org/wiki/Q899834","display_name":"Teichoic acid","level":4,"score":0.6057667136192322},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.593978226184845},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.5830332040786743},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.579587459564209},{"id":"https://openalex.org/C2778883795","wikidata":"https://www.wikidata.org/wiki/Q804517","display_name":"Pathogenic bacteria","level":3,"score":0.5579814910888672},{"id":"https://openalex.org/C136449434","wikidata":"https://www.wikidata.org/wiki/Q428253","display_name":"Innate immune system","level":3,"score":0.5447550415992737},{"id":"https://openalex.org/C2779306812","wikidata":"https://www.wikidata.org/wiki/Q131271","display_name":"Streptococcus pyogenes","level":4,"score":0.5079203248023987},{"id":"https://openalex.org/C2781253189","wikidata":"https://www.wikidata.org/wiki/Q221179","display_name":"Streptococcus pneumoniae","level":3,"score":0.5013515949249268},{"id":"https://openalex.org/C19655278","wikidata":"https://www.wikidata.org/wiki/Q3293735","display_name":"Bacterial cell structure","level":3,"score":0.49968767166137695},{"id":"https://openalex.org/C125235067","wikidata":"https://www.wikidata.org/wiki/Q128700","display_name":"Cell wall","level":2,"score":0.450094997882843},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.4415239095687866},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.3914288878440857},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.19819068908691406},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19112738966941833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1459200382232666},{"id":"https://openalex.org/C2779489039","wikidata":"https://www.wikidata.org/wiki/Q188121","display_name":"Staphylococcus aureus","level":3,"score":0.06505098938941956},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.0643606185913086}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-11-s4-p8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-p8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-P8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:e8f2226eebc140aeb41bc25b5d3c23d8","is_oa":true,"landing_page_url":"https://doaj.org/article/e8f2226eebc140aeb41bc25b5d3c23d8","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss Suppl 4, p P8 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3290091","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3290091","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-s4-p8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-p8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-P8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2040611663.pdf","grobid_xml":"https://content.openalex.org/works/W2040611663.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1968718809","https://openalex.org/W2029361361","https://openalex.org/W2068294914","https://openalex.org/W2069663555","https://openalex.org/W2106882534","https://openalex.org/W2115367506","https://openalex.org/W2150444353","https://openalex.org/W2171763199"],"related_works":["https://openalex.org/W1896640730","https://openalex.org/W1865010306","https://openalex.org/W2605207782","https://openalex.org/W1558206557","https://openalex.org/W2790489072","https://openalex.org/W2787707083","https://openalex.org/W2056405753","https://openalex.org/W271194786","https://openalex.org/W2085566611","https://openalex.org/W1981039934"],"abstract_inverted_index":{"Figure":[0],"The":[1],"analysis":[2],"involves":[3],"the":[4,13,41,50,53],"surface":[5],"mapping":[6],"of":[7,16,49],"aligned":[8,42],"amino":[9],"acid":[10],"sequences":[11],"to":[12],"three-dimensional":[14],"structure":[15],"S.":[17],"pneumoniae":[18],"PgdA":[19],"(Protein":[20],"Data":[21],"Bank":[22],"ID":[23],"2c1g).":[24],"Highly":[25],"conserved":[26,39],"residues":[27],"are":[28,33,44],"shown":[29],"in":[30],"red":[31],"(some":[32],"labeled":[34],"for":[35],"reference).":[36],"These":[37],"residues,":[38],"among":[40],"proteins,":[43],"located":[45],"within":[46],"one":[47],"region":[48],"enzyme,":[51],"surrounding":[52],"acetyl-binding":[54],"groove.":[55]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
