{"id":"https://openalex.org/W2172070580","doi":"https://doi.org/10.1186/1471-2105-11-s4-o5","title":"Inferring gene coexpression networks for low dose ionizing radiation using graph theoretical algorithms and systems genetics","display_name":"Inferring gene coexpression networks for low dose ionizing radiation using graph theoretical algorithms and systems genetics","publication_year":2010,"publication_date":"2010-07-01","ids":{"openalex":"https://openalex.org/W2172070580","doi":"https://doi.org/10.1186/1471-2105-11-s4-o5","mag":"2172070580"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-s4-o5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-o5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-O5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-O5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070786174","display_name":"Sudhir Naswa","orcid":null},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sudhir Naswa","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN, 37996, USA","Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN, 37996, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020343019","display_name":"Gary L. Rogers","orcid":"https://orcid.org/0000-0002-9224-3661"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary L Rogers","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN, 37996, USA","Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN, 37996, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091243093","display_name":"Rachel Lynch","orcid":"https://orcid.org/0000-0001-8164-0744"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rachel M Lynch","raw_affiliation_strings":["Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001228618","display_name":"Stephen A. Kania","orcid":"https://orcid.org/0000-0002-4490-7347"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen A Kania","raw_affiliation_strings":["Department of Comparative Medicine, University of Tennessee, Knoxville, TN, 37996, USA","Department of Comparative Medicine, University of Tennessee, Knoxville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Comparative Medicine, University of Tennessee, Knoxville, TN, 37996, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Department of Comparative Medicine, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110109329","display_name":"Suchita Das","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suchita Das","raw_affiliation_strings":["Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022843316","display_name":"Elissa J. Chesler","orcid":"https://orcid.org/0000-0002-5642-5062"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elissa J Chesler","raw_affiliation_strings":["Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","The Jackson Laboratory, Bar Harbor, ME, 04609, USA","Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, USA","The Jackson Laboratory, Bar Harbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, 04609, USA","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041646784","display_name":"Arnold M. Saxton","orcid":"https://orcid.org/0000-0003-3345-5127"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arnold M Saxton","raw_affiliation_strings":["Department of Animal Science, University of Tennessee, Knoxville, TN, 37996, USA","Department of Animal Science, University of Tennessee, Knoxville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, University of Tennessee, Knoxville, TN, 37996, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Department of Animal Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007918640","display_name":"Brynn H. Voy","orcid":"https://orcid.org/0000-0003-1923-9110"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brynn H Voy","raw_affiliation_strings":["Department of Animal Science, University of Tennessee, Knoxville, TN, 37996, USA","Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","Department of Animal Science, University of Tennessee, Knoxville, USA","Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, University of Tennessee, Knoxville, TN, 37996, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Department of Animal Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Systems Genetics Group, Oak Ridge National Laboratory, Oak Ridge, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011863644","display_name":"Michael A. Langston","orcid":"https://orcid.org/0000-0001-5945-5796"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael A Langston","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN, 37996, USA","Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN, 37996, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011863644"],"corresponding_institution_ids":["https://openalex.org/I75027704"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.0,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.12780096,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"S4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ionizing-radiation","display_name":"Ionizing radiation","score":0.6642553806304932},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6200255155563354},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5796535015106201},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5497914552688599},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48904165625572205},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.46300438046455383},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45714855194091797},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40576833486557007},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33448097109794617},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2916538715362549},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16223299503326416}],"concepts":[{"id":"https://openalex.org/C18231593","wikidata":"https://www.wikidata.org/wiki/Q186161","display_name":"Ionizing radiation","level":3,"score":0.6642553806304932},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6200255155563354},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5796535015106201},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5497914552688599},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48904165625572205},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.46300438046455383},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45714855194091797},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40576833486557007},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33448097109794617},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2916538715362549},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16223299503326416},{"id":"https://openalex.org/C185544564","wikidata":"https://www.wikidata.org/wiki/Q81197","display_name":"Nuclear physics","level":1,"score":0.0},{"id":"https://openalex.org/C111337013","wikidata":"https://www.wikidata.org/wiki/Q2737837","display_name":"Irradiation","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-11-s4-o5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-o5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-O5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3290059","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3290059","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:934120a7a48d4229b1abfe9f932639dd","is_oa":true,"landing_page_url":"https://doaj.org/article/934120a7a48d4229b1abfe9f932639dd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss Suppl 4, p O5 (2010)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-s4-o5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s4-o5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S4-O5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2172070580.pdf","grobid_xml":"https://content.openalex.org/works/W2172070580.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2798735802","https://openalex.org/W2911908587","https://openalex.org/W4206616768","https://openalex.org/W2501493637","https://openalex.org/W4206147900","https://openalex.org/W4248584036","https://openalex.org/W2393727419","https://openalex.org/W2410053714","https://openalex.org/W2517584471","https://openalex.org/W2044997699"],"abstract_inverted_index":{"Materials":[0],"and":[1,91,107,124,159,182,189,240,256],"methods":[2],"We":[3,21,42,60,129,192],"have":[4],"developed":[5],"a":[6,268],"tool":[7,26,132],"chain":[8,27],"using":[9,44,76,83,117,199],"novel":[10],"graph":[11,96,114],"algorithms":[12],"to":[13,28,48,120,150,177,223],"extract":[14],"gene":[15,65,204,249],"coexpression":[16],"networks":[17],"from":[18,68,100,168,196,201],"microarray":[19,157],"data.":[20],"highlight":[22],"implementation":[23],"of":[24,32,53,71,85,126,162,237,244,258],"our":[25,118],"investigate":[29,49],"the":[30,50,62,122,156,169,234],"effects":[31,52],"in":[33,155,251],"vivo":[34],"low":[35,54,238],"dose":[36,55,239,242],"ionizing":[37,58,245],"radiation":[38],"treatments":[39],"on":[40,247],"mice.":[41],"are":[43],"systems":[45],"genetics":[46],"approach":[47],"biological":[51,163],"(10":[56],"cGy)":[57],"radiation.":[59],"measured":[61],"base":[63,202],"line":[64,203],"expression":[66,205,250],"profile":[67],"spleen":[69,248],"tissue":[70],"BXD":[72,171,197,259],"recombinant":[73,260],"inbred":[74,252,261],"mice":[75,262],"Illumina":[77],"microarrays.":[78],"The":[79,113,214],"data":[80,158,167,198],"was":[81,97,115],"filtered":[82],"coefficient":[84],"variance":[86,92],"after":[87],"robust":[88],"spline":[89],"normalization":[90],"stabilizing":[93],"transformation.":[94],"A":[95],"then":[98],"derived":[99],"this":[101],"data,":[102],"with":[103,211],"probes":[104],"as":[105,218,263,265],"vertices":[106],"edges":[108],"between":[109,144,180],"them":[110],"representing":[111],"correlations.":[112],"analyzed":[116],"toolkit":[119],"find":[121],"size":[123],"number":[125],"maximal":[127],"cliques.":[128],"deployed":[130],"another":[131],"called":[133],"paraclique":[134],"that":[135,139],"relaxes":[136],"clique\u2019s":[137],"requirement":[138],"every":[140],"edge":[141],"be":[142],"present":[143],"all":[145],"vertices.":[146],"Paraclique":[147],"enables":[148],"us":[149],"account":[151],"for":[152],"inherent":[153],"noise":[154],"stochastic":[160],"nature":[161],"processes.":[164],"Using":[165],"immunophenotype":[166],"baseline":[170],"mice,":[172,267],"we":[173,231],"employed":[174],"biclique":[175],"analysis":[176],"determine":[178],"interactions":[179],"genotypes":[181],"immunophenotypes":[183],"(%CD4,":[184],"%CD3,":[185],"LN":[186,190],"T:B,":[187],"%CD8,":[188],"CD4:CD8).":[191],"also":[193,232],"extracted":[194],"eQTLs":[195,215],"QTL-Reaper":[200],"profiles.":[206],"1881":[207],"transcripts":[208],"were":[209,216],"associated":[210],"686":[212],"loci.":[213],"classified":[217],"cis":[219],"or":[220],"trans":[221],"according":[222],"their":[224],"genomic":[225],"positions.":[226],"Besides":[227],"population":[228],"level":[229],"studies":[230],"investigated":[233],"differential":[235],"effect":[236],"high":[241],"(1Gy)":[243],"radiations":[246],"parental":[253],"strains":[254],"(C57BL/6J":[255],"DBA/2J)":[257],"well":[264],"BALB/c":[266],"known":[269],"radiation-sensitive":[270],"strain.":[271]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2016-06-24T00:00:00"}
