{"id":"https://openalex.org/W2118147999","doi":"https://doi.org/10.1186/1471-2105-11-s12-s12","title":"The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button","display_name":"The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2118147999","doi":"https://doi.org/10.1186/1471-2105-11-s12-s12","mag":"2118147999","pmid":"https://pubmed.ncbi.nlm.nih.gov/21210979"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-s12-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s12-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S12-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S12-S12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052368642","display_name":"Morris A. Swertz","orcid":"https://orcid.org/0000-0002-0979-3401"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Morris A Swertz","raw_affiliation_strings":["Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Department of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB Groningen, The Netherlands. m.a.swertz@rug.nl","Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Department of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB Groningen, The Netherlands. m.a.swertz@rug.nl","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002999145","display_name":"Martijn Dijkstra","orcid":"https://orcid.org/0000-0001-8345-8196"},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Martijn Dijkstra","raw_affiliation_strings":["Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","Netherlands Bioinformatics Centre, http://www.nbic.nl, Geert Grooteplein 28, 6525 GA, Nijmegen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, http://www.nbic.nl, Geert Grooteplein 28, 6525 GA, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007740400","display_name":"Tomasz Adamusiak","orcid":"https://orcid.org/0000-0002-0746-2916"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tomasz Adamusiak","raw_affiliation_strings":["EU-GEN2PHEN consortium http://www.gen2phen.org","European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EU-GEN2PHEN consortium http://www.gen2phen.org","institution_ids":[]},{"raw_affiliation_string":"European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050501995","display_name":"Joeri K. van der Velde","orcid":null},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I2801376732","display_name":"Eurotransplant","ror":"https://ror.org/00ph3nz62","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801376732"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Joeri K van der Velde","raw_affiliation_strings":["EU-EUROTRANS cosortium http://www.euratrans.eu","EU-PANACEA consortium http://www.panaceaproject.eu","Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EU-EUROTRANS cosortium http://www.euratrans.eu","institution_ids":["https://openalex.org/I2801376732"]},{"raw_affiliation_string":"EU-PANACEA consortium http://www.panaceaproject.eu","institution_ids":[]},{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014724586","display_name":"Alexandros Kanterakis","orcid":"https://orcid.org/0000-0003-4276-0115"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Alexandros Kanterakis","raw_affiliation_strings":["Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031524432","display_name":"Erik T Roos","orcid":null},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Erik T Roos","raw_affiliation_strings":["Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052293067","display_name":"Joris Lops","orcid":null},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Joris Lops","raw_affiliation_strings":["Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106078294","display_name":"Gu\u00f0mundur \u00c1. \u00de\u00f3risson","orcid":"https://orcid.org/0000-0001-5635-1860"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gudmundur A Thorisson","raw_affiliation_strings":["Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK","EU-GEN2PHEN consortium http://www.gen2phen.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"EU-GEN2PHEN consortium http://www.gen2phen.org","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082321074","display_name":"Danny Arends","orcid":"https://orcid.org/0000-0001-8738-0162"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Danny Arends","raw_affiliation_strings":["Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084021799","display_name":"George Byelas","orcid":null},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"George Byelas","raw_affiliation_strings":["Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028476056","display_name":"Juha Muilu","orcid":"https://orcid.org/0000-0002-1034-5171"},"institutions":[{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Juha Muilu","raw_affiliation_strings":["EU-GEN2PHEN consortium http://www.gen2phen.org","Institute for Molecular Medicine Finland, University of Helsinki, Haartmaninkatu 8, FIN-00290, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EU-GEN2PHEN consortium http://www.gen2phen.org","institution_ids":[]},{"raw_affiliation_string":"Institute for Molecular Medicine Finland, University of Helsinki, Haartmaninkatu 8, FIN-00290, Helsinki, Finland","institution_ids":["https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007022165","display_name":"Anthony J. Brookes","orcid":"https://orcid.org/0000-0001-8686-0017"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anthony J Brookes","raw_affiliation_strings":["Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK","EU-GEN2PHEN consortium http://www.gen2phen.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"EU-GEN2PHEN consortium http://www.gen2phen.org","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109845108","display_name":"E.O. de Brock","orcid":null},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Engbert O de Brock","raw_affiliation_strings":["Cluster Information Systems, Faculty of Economics and Business, University of Groningen, P.O. Box 800, 9700 AV, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cluster Information Systems, Faculty of Economics and Business, University of Groningen, P.O. Box 800, 9700 AV, Groningen, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101455731","display_name":"Ritsert C. Jansen","orcid":"https://orcid.org/0000-0003-2977-9110"},"institutions":[{"id":"https://openalex.org/I2801376732","display_name":"Eurotransplant","ror":"https://ror.org/00ph3nz62","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801376732"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"funder","lineage":["https://openalex.org/I1334415907"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ritsert C Jansen","raw_affiliation_strings":["EU-EUROTRANS cosortium http://www.euratrans.eu","EU-PANACEA consortium http://www.panaceaproject.eu","Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EU-EUROTRANS cosortium http://www.euratrans.eu","institution_ids":["https://openalex.org/I2801376732"]},{"raw_affiliation_string":"EU-PANACEA consortium http://www.panaceaproject.eu","institution_ids":[]},{"raw_affiliation_string":"Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen & Dept. of Genetics, University Medical Center Groningen, P.O. Box 30001, 9700 RB, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020620537","display_name":"Helen Parkinson","orcid":"https://orcid.org/0000-0003-3035-4195"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Helen Parkinson","raw_affiliation_strings":["EU-CASIMIR consortium http://www.casimir.ac.uk","EU-GEN2PHEN consortium http://www.gen2phen.org","European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EU-CASIMIR consortium http://www.casimir.ac.uk","institution_ids":[]},{"raw_affiliation_string":"EU-GEN2PHEN consortium http://www.gen2phen.org","institution_ids":[]},{"raw_affiliation_string":"European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5052368642"],"corresponding_institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":20.7489,"has_fulltext":true,"cited_by_count":158,"citation_normalized_percentile":{"value":0.99209738,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"11","issue":"S12","first_page":"S12","last_page":"S12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.41749998927116394,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.41749998927116394,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.20659999549388885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.14350000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8436139822006226},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5515664219856262},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5255100727081299},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.503163754940033},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.4904803931713104},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.4857478737831116},{"id":"https://openalex.org/keywords/bespoke","display_name":"Bespoke","score":0.47306644916534424},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.4596104621887207},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4506238102912903},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4449227452278137},{"id":"https://openalex.org/keywords/code-generation","display_name":"Code generation","score":0.44038841128349304},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.42609864473342896},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.422545850276947},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.4209631383419037},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4183613061904907},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.412198543548584},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3904433846473694},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3865870535373688},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3417927622795105},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3253024220466614},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.24209150671958923},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.22198298573493958},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.2200971245765686}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8436139822006226},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5515664219856262},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5255100727081299},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.503163754940033},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.4904803931713104},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.4857478737831116},{"id":"https://openalex.org/C44210515","wikidata":"https://www.wikidata.org/wiki/Q16968978","display_name":"Bespoke","level":2,"score":0.47306644916534424},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.4596104621887207},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4506238102912903},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4449227452278137},{"id":"https://openalex.org/C133162039","wikidata":"https://www.wikidata.org/wiki/Q1061077","display_name":"Code generation","level":3,"score":0.44038841128349304},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.42609864473342896},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.422545850276947},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.4209631383419037},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4183613061904907},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.412198543548584},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3904433846473694},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3865870535373688},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3417927622795105},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3253024220466614},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.24209150671958923},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.22198298573493958},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2200971245765686},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-11-s12-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s12-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S12-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21210979","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21210979","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.rug.nl:publications/927089e7-c8b8-48ec-b375-65def7c51a62","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/927089e7-c8b8-48ec-b375-65def7c51a62","pdf_url":"https://pure.rug.nl/ws/files/6762040/2010BMCBioinformSwertz.pdf","source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Swertz, M A, Dijkstra, M, Adamusiak, T, van der Velde, J K, Kanterakis, A, Roos, E T, Lops, J, Thorisson, G A, Arends, D, Byelas, G, Muilu, J, Brookes, A J, de Brock, E O, Jansen, R C & Parkinson, H 2010, 'The MOLGENIS toolkit : rapid prototyping of biosoftware at the push of a button', Bmc Bioinformatics, vol. 11 suppl 12 , no. S12, 12, pp. S12-1-S12-9. https://doi.org/10.1186/1471-2105-11-S12-S12","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:figshare.com:article/10099850","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/The_MOLGENIS_toolkit_rapid_prototyping_of_biosoftware_at_the_push_of_a_button/10099850","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:helda.helsinki.fi:10138/162823","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/162823","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:lra.le.ac.uk:2381/9472","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/11/S12/S12","pdf_url":null,"source":{"id":"https://openalex.org/S4306402365","display_name":"Leicester Research Archive (University of Leicester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I153648349","host_organization_name":"University of Leicester","host_organization_lineage":["https://openalex.org/I153648349"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Published Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3040526","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3040526","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.rug.nl:openaire_cris_publications/927089e7-c8b8-48ec-b375-65def7c51a62","is_oa":true,"landing_page_url":"https://hdl.handle.net/11370/927089e7-c8b8-48ec-b375-65def7c51a62","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Swertz, M A, Dijkstra, M, Adamusiak, T, van der Velde, J K, Kanterakis, A, Roos, E T, Lops, J, Thorisson, G A, Arends, D, Byelas, G, Muilu, J, Brookes, A J, de Brock, E O, Jansen, R C & Parkinson, H 2010, 'The MOLGENIS toolkit : rapid prototyping of biosoftware at the push of a button', Bmc Bioinformatics, vol. 11 suppl 12 , no. S12, 12, pp. S12-1-S12-9. https://doi.org/10.1186/1471-2105-11-S12-S12","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-s12-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-s12-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-S12-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G1835165828","display_name":"Quantitative pathway analysis of natural variation in complex disease signaling in C. elegans","funder_award_id":"222936","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6401217413","display_name":null,"funder_award_id":"200754","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320328786","display_name":"Norwegian Biodiversity Information Centre","ror":"https://ror.org/04jnzhb65"},{"id":"https://openalex.org/F4320338377","display_name":"FP7 Health","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118147999.pdf","grobid_xml":"https://content.openalex.org/works/W2118147999.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1564594068","https://openalex.org/W1564625264","https://openalex.org/W1588705563","https://openalex.org/W1596790865","https://openalex.org/W1958582444","https://openalex.org/W1970629860","https://openalex.org/W1996975870","https://openalex.org/W2059942711","https://openalex.org/W2061659496","https://openalex.org/W2087383805","https://openalex.org/W2099495260","https://openalex.org/W2100895966","https://openalex.org/W2101648527","https://openalex.org/W2113758252","https://openalex.org/W2114739399","https://openalex.org/W2119748718","https://openalex.org/W2123586642","https://openalex.org/W2129420975","https://openalex.org/W2130743074","https://openalex.org/W2136482257","https://openalex.org/W2153091158","https://openalex.org/W2168103533","https://openalex.org/W2171016123","https://openalex.org/W2171018484","https://openalex.org/W2983995785"],"related_works":["https://openalex.org/W149306499","https://openalex.org/W4385891864","https://openalex.org/W4321472021","https://openalex.org/W2893042097","https://openalex.org/W2118851895","https://openalex.org/W1991339919","https://openalex.org/W2159912353","https://openalex.org/W2461542739","https://openalex.org/W3209257682","https://openalex.org/W3102710405"],"abstract_inverted_index":{"BACKGROUND:":[0],"There":[1],"is":[2,99,228],"a":[3,35,58,73,83,100,153,271,307,325],"huge":[4],"demand":[5],"on":[6],"bioinformaticians":[7,56,259,305],"to":[8,19,41,61,114,231,250,260,275,310],"provide":[9],"their":[10,254],"biologists":[11,249],"with":[12,57,238,241,292,306,324],"user":[13,67,90,246],"friendly":[14],"and":[15,22,66,94,126,133,147,164,203,252,269,278,282,321,337],"scalable":[16],"software":[17,39,336],"infrastructures":[18],"capture,":[20],"exchange,":[21],"exploit":[23,253],"the":[24,44,70,130,161,184,188,225,232,297,335],"unprecedented":[25],"amounts":[26],"of":[27,72,102,123,191,194,208,215,280,327],"new":[28],"*omics":[29],"data.":[30],"We":[31],"here":[32],"present":[33],"MOLGENIS,":[34],"generic,":[36],"open":[37,344],"source,":[38],"toolkit":[40,54,186,303],"quickly":[42,146,290,311],"produce":[43],"bespoke":[45],"MOLecular":[46],"GENetics":[47],"Information":[48],"Systems":[49],"needed.":[50],"METHODS:":[51],"The":[52,301],"MOLGENIS":[53,139,185,239,293,302],"provides":[55,304],"simple":[59,308],"language":[60,132],"model":[62,209,309],"biological":[63],"data":[64],"structures":[65],"interfaces.":[68,96],"At":[69],"push":[71],"button,":[74],"MOLGENIS'":[75],"generator":[76,98,162],"suite":[77,163],"automatically":[78],"translates":[79],"these":[80],"models":[81],"into":[82],"feature-rich,":[84],"ready-to-use":[85],"web":[86,314],"application":[87,236],"including":[88,197],"database,":[89],"interfaces,":[91],"exchange":[92,279],"formats,":[93],"scriptable":[95],"Each":[97,235],"template":[101],"SQL,":[103],"JAVA,":[104],"R,":[105,265],"or":[106],"HTML":[107],"code":[108],"that":[109,142,159],"would":[110],"require":[111],"much":[112,172],"effort":[113],"write":[115],"by":[116,152,331],"hand.":[117],"This":[118],"'model-driven'":[119],"method":[120],"ensures":[121,158],"reuse":[122],"best":[124],"practices":[125],"improves":[127],"quality":[128],"because":[129],"modeling":[131],"generators":[134],"are":[135,144,149,339],"shared":[136,150],"between":[137],"all":[138,317],"applications,":[140,196],"so":[141],"errors":[143],"found":[145],"improvements":[148],"easily":[151],"re-generation.":[154],"A":[155],"plug-in":[156],"mechanism":[157],"both":[160],"generated":[165,237,294],"product":[166],"can":[167,288],"be":[168,289],"customized":[169],"just":[170],"as":[171,173,342],"hand-written":[174,216],"software.":[175],"RESULTS:":[176],"In":[177],"recent":[178],"years":[179],"we":[180],"have":[181],"successfully":[182],"evaluated":[183],"for":[187,221,248,258,316],"rapid":[189],"prototyping":[190],"many":[192],"types":[193],"biomedical":[195],"next-generation":[198],"sequencing,":[199],"GWAS,":[200],"QTL,":[201],"proteomics":[202],"biobanking.":[204],"Writing":[205],"500":[206],"lines":[207,214],"XML":[210],"typically":[211],"replaces":[212],"15,000":[213],"programming":[217,256],"code,":[218],"which":[219],"allows":[220],"quick":[222],"adaptation":[223],"if":[224],"information":[226],"system":[227],"not":[229,329],"yet":[230],"biologist's":[233],"satisfaction.":[234],"comes":[240],"an":[242],"optimized":[243],"database":[244],"back-end,":[245],"interfaces":[247,257,295,328],"manage":[251],"data,":[255,281],"script":[261],"analysis":[262],"tools":[263],"in":[264],"Java,":[266],"SOAP,":[267],"REST/JSON":[268],"RDF,":[270],"tab-delimited":[272],"file":[273],"format":[274],"ease":[276],"upload":[277],"detailed":[283],"technical":[284],"documentation.":[285],"Existing":[286],"databases":[287],"enhanced":[291],"using":[296],"'ExtractModel'":[298],"procedure.":[299],"CONCLUSIONS:":[300],"generate":[312],"flexible":[313],"platforms":[315],"possible":[318],"genomic,":[319],"molecular":[320],"phenotypic":[322],"experiments":[323],"richness":[326],"provided":[330],"other":[332],"tools.":[333],"All":[334],"manuals":[338],"available":[340],"free":[341],"LGPLv3":[343],"source":[345],"at":[346],"http://www.molgenis.org.":[347]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":12}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
