{"id":"https://openalex.org/W2166432938","doi":"https://doi.org/10.1186/1471-2105-11-7","title":"TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses","display_name":"TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses","publication_year":2010,"publication_date":"2010-01-05","ids":{"openalex":"https://openalex.org/W2166432938","doi":"https://doi.org/10.1186/1471-2105-11-7","mag":"2166432938","pmid":"https://pubmed.ncbi.nlm.nih.gov/20051126"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042952708","display_name":"Ben C St\u00f6ver","orcid":"https://orcid.org/0000-0003-4443-7733"},"institutions":[{"id":"https://openalex.org/I4210096541","display_name":"Institute for Biodiversity","ror":"https://ror.org/01n8ggb71","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210096541"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ben C St\u00f6ver","raw_affiliation_strings":["Institute for Evolution and Biodiversity, University of M\u00fcnster, H\u00fcfferstrasse 1, 48149 M\u00fcnster, Germany. stoever@bioinfweb.info","Institute for Evolution and Biodiversity, University of M\u00fcnster, H\u00fcfferstra\u00dfe 1, 48149, M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Evolution and Biodiversity, University of M\u00fcnster, H\u00fcfferstrasse 1, 48149 M\u00fcnster, Germany. stoever@bioinfweb.info","institution_ids":["https://openalex.org/I4210096541"]},{"raw_affiliation_string":"Institute for Evolution and Biodiversity, University of M\u00fcnster, H\u00fcfferstra\u00dfe 1, 48149, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053484497","display_name":"Kai M\u00fcller","orcid":"https://orcid.org/0000-0002-0962-3824"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kai F M\u00fcller","raw_affiliation_strings":["Institute for Evolution and Biodiversity, University of M\u00fcnster, H\u00fcfferstra\u00dfe 1, 48149, M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Evolution and Biodiversity, University of M\u00fcnster, H\u00fcfferstra\u00dfe 1, 48149, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5042952708"],"corresponding_institution_ids":["https://openalex.org/I22465464","https://openalex.org/I4210096541"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":73.6835,"has_fulltext":true,"cited_by_count":1633,"citation_normalized_percentile":{"value":0.99976562,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"7","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.739432692527771},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6804772615432739},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6746299862861633},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.6411108374595642},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6220437288284302},{"id":"https://openalex.org/keywords/disk-formatting","display_name":"Disk formatting","score":0.579679012298584},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5000872611999512},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4778430163860321},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4329341650009155},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33115482330322266},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31093505024909973},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14533758163452148},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1404390037059784},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11252197623252869},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10404801368713379}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.739432692527771},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6804772615432739},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6746299862861633},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.6411108374595642},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6220437288284302},{"id":"https://openalex.org/C88006597","wikidata":"https://www.wikidata.org/wiki/Q690117","display_name":"Disk formatting","level":2,"score":0.579679012298584},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5000872611999512},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4778430163860321},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4329341650009155},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33115482330322266},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31093505024909973},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14533758163452148},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1404390037059784},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11252197623252869},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10404801368713379},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20051126","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20051126","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8532cab6964a48478e7c24d2ab243729","is_oa":true,"landing_page_url":"https://doaj.org/article/8532cab6964a48478e7c24d2ab243729","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 7 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2806359","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2806359","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5398132153","display_name":null,"funder_award_id":"DFG grant","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166432938.pdf","grobid_xml":"https://content.openalex.org/works/W2166432938.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1503096336","https://openalex.org/W1521650410","https://openalex.org/W2018093010","https://openalex.org/W2063479108","https://openalex.org/W2078151980","https://openalex.org/W2081036780","https://openalex.org/W2086427775","https://openalex.org/W2096484952","https://openalex.org/W2100412820","https://openalex.org/W2101829413","https://openalex.org/W2102825463","https://openalex.org/W2110835349","https://openalex.org/W2127735379","https://openalex.org/W2132247062","https://openalex.org/W2138946246","https://openalex.org/W2142008033","https://openalex.org/W2146396346","https://openalex.org/W2149057166","https://openalex.org/W2150270014","https://openalex.org/W2150297520","https://openalex.org/W2168696662","https://openalex.org/W2177946676","https://openalex.org/W2611511275"],"related_works":["https://openalex.org/W4244466418","https://openalex.org/W2104062382","https://openalex.org/W2162878363","https://openalex.org/W2389021890","https://openalex.org/W3023343521","https://openalex.org/W2362218761","https://openalex.org/W2062354928","https://openalex.org/W2113708670","https://openalex.org/W2088120817","https://openalex.org/W1985727224"],"abstract_inverted_index":{"TreeGraph":[0],"2":[1],"is":[2,37],"a":[3,30],"user-friendly,":[4],"fully":[5],"documented":[6],"application":[7],"to":[8],"produce":[9],"ready-to-publish":[10],"trees.":[11],"It":[12],"can":[13],"display":[14],"any":[15],"number":[16,32],"of":[17,33],"annotations":[18],"in":[19],"several":[20],"ways,":[21],"and":[22,26,35],"permits":[23],"easily":[24],"importing":[25],"combining":[27],"them.":[28],"Additionally,":[29],"great":[31],"editing-":[34],"formatting-operations":[36],"available.":[38]},"counts_by_year":[{"year":2026,"cited_by_count":18},{"year":2025,"cited_by_count":102},{"year":2024,"cited_by_count":107},{"year":2023,"cited_by_count":148},{"year":2022,"cited_by_count":124},{"year":2021,"cited_by_count":165},{"year":2020,"cited_by_count":148},{"year":2019,"cited_by_count":163},{"year":2018,"cited_by_count":152},{"year":2017,"cited_by_count":119},{"year":2016,"cited_by_count":99},{"year":2015,"cited_by_count":86},{"year":2014,"cited_by_count":53},{"year":2013,"cited_by_count":56},{"year":2012,"cited_by_count":38}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}