{"id":"https://openalex.org/W2032682947","doi":"https://doi.org/10.1186/1471-2105-11-599","title":"A genome alignment algorithm based on compression","display_name":"A genome alignment algorithm based on compression","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2032682947","doi":"https://doi.org/10.1186/1471-2105-11-599","mag":"2032682947","pmid":"https://pubmed.ncbi.nlm.nih.gov/21159205"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-599","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-599","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-599","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-599","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087702540","display_name":"Minh Duc Cao","orcid":"https://orcid.org/0000-0003-4079-2383"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Minh Duc Cao","raw_affiliation_strings":["Clayton School of Information Technology, Monash University, Clayton 3800, Australia. minhduc@monash.edu","Clayton School of Information Technology, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clayton School of Information Technology, Monash University, Clayton 3800, Australia. minhduc@monash.edu","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Clayton School of Information Technology, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110209287","display_name":"Trevor I. Dix","orcid":null},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Trevor I Dix","raw_affiliation_strings":["Clayton School of Information Technology, Monash University, Clayton, 3800, Australia","Clayton School of Information Technology, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clayton School of Information Technology, Monash University, Clayton, 3800, Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Clayton School of Information Technology, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065385022","display_name":"Lloyd Allison","orcid":"https://orcid.org/0000-0002-9020-3164"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Lloyd Allison","raw_affiliation_strings":["Clayton School of Information Technology, Monash University, Clayton, 3800, Australia","Clayton School of Information Technology, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clayton School of Information Technology, Monash University, Clayton, 3800, Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Clayton School of Information Technology, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5087702540"],"corresponding_institution_ids":["https://openalex.org/I56590836"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.6227,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.66048413,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11","issue":"1","first_page":"599","last_page":"599"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6014000177383423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6014000177383423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.2605000138282776,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.03709999844431877,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.7291319370269775},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.6223244071006775},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5879384875297546},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.5447746515274048},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5071322917938232},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4999885559082031},{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.4950048327445984},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.45875027775764465},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4507772624492645},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.42702916264533997},{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.41488727927207947},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.37937143445014954},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37921786308288574},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3631930351257324},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2780722379684448},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25395387411117554},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.21913591027259827},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18066555261611938}],"concepts":[{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.7291319370269775},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.6223244071006775},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5879384875297546},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.5447746515274048},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5071322917938232},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4999885559082031},{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.4950048327445984},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.45875027775764465},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4507772624492645},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.42702916264533997},{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.41488727927207947},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.37937143445014954},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37921786308288574},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3631930351257324},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2780722379684448},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25395387411117554},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.21913591027259827},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18066555261611938},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-11-599","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-599","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-599","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21159205","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21159205","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2006926","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3022628","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:doi:10.26180/20365233","is_oa":false,"landing_page_url":"https://monash.hosted.exlibrisgroup.com/permalink/f/31uhmh/catau21143513770001751","pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Report"},{"id":"pmh:oai:doaj.org/article:d9947aad25a942e88ffeb2748b662354","is_oa":false,"landing_page_url":"https://doaj.org/article/d9947aad25a942e88ffeb2748b662354","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 599 (2010)","raw_type":"article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:338003","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:figshare.com:article/20365233","is_oa":true,"landing_page_url":"https://figshare.com/articles/report/A_Genome_Alignment_Algorithm_Based_on_Compression/20365233","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Report"},{"id":"doi:10.26180/20365233.v1","is_oa":true,"landing_page_url":"https://doi.org/10.26180/20365233.v1","pdf_url":null,"source":{"id":"https://openalex.org/S7407052105","display_name":"Monash University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Report"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-599","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-599","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-599","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2032682947.pdf","grobid_xml":"https://content.openalex.org/works/W2032682947.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W102444432","https://openalex.org/W596558207","https://openalex.org/W1482360569","https://openalex.org/W1495968121","https://openalex.org/W1534506107","https://openalex.org/W1547232385","https://openalex.org/W1589969568","https://openalex.org/W1868186886","https://openalex.org/W1966833356","https://openalex.org/W1971403296","https://openalex.org/W1973578915","https://openalex.org/W1980397590","https://openalex.org/W1986014242","https://openalex.org/W1987243495","https://openalex.org/W1995875735","https://openalex.org/W2010961546","https://openalex.org/W2014753445","https://openalex.org/W2015292449","https://openalex.org/W2018885841","https://openalex.org/W2019604065","https://openalex.org/W2022674051","https://openalex.org/W2032682947","https://openalex.org/W2038605324","https://openalex.org/W2044532497","https://openalex.org/W2047043596","https://openalex.org/W2050334742","https://openalex.org/W2051916497","https://openalex.org/W2055043387","https://openalex.org/W2057998009","https://openalex.org/W2061641880","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2094545411","https://openalex.org/W2095685450","https://openalex.org/W2107248520","https://openalex.org/W2107282968","https://openalex.org/W2109692166","https://openalex.org/W2110291136","https://openalex.org/W2110381504","https://openalex.org/W2118581189","https://openalex.org/W2125625789","https://openalex.org/W2127912200","https://openalex.org/W2133312664","https://openalex.org/W2136570298","https://openalex.org/W2137986897","https://openalex.org/W2142619120","https://openalex.org/W2143210482","https://openalex.org/W2158714788","https://openalex.org/W2161387979","https://openalex.org/W2171547914","https://openalex.org/W2506584907","https://openalex.org/W4365799980"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W1486249959","https://openalex.org/W2948014085","https://openalex.org/W4386770652","https://openalex.org/W2468116983","https://openalex.org/W2004215917","https://openalex.org/W2885386129","https://openalex.org/W2111937814","https://openalex.org/W2141530749","https://openalex.org/W2103737249"],"abstract_inverted_index":{"BACKGROUND:":[0],"Traditional":[1],"genome":[2,85,166],"alignment":[3,7,19,195,215,227],"methods":[4,150],"consider":[5],"sequence":[6,78,214,251],"as":[8,233],"a":[9,43,72,102,130,170,203],"variation":[10],"of":[11,23,51,53,68,93,104,123,164,223,245],"the":[12,24,49,65,97,175,184,220,242],"string":[13],"edit":[14],"distance":[15],"problem,":[16],"and":[17,32,140,156,257],"perform":[18],"by":[20,129],"matching":[21,226],"characters":[22],"two":[25,107],"sequences.":[26],"They":[27],"are":[28,236],"often":[29],"computationally":[30],"expensive":[31],"unable":[33],"to":[34,47,109,148,186,218,238],"deal":[35],"with":[36,168],"low":[37],"information":[38,66,115,121,243],"regions.":[39],"Furthermore,":[40],"they":[41],"lack":[42],"well-principled":[44],"objective":[45,179],"function":[46,180],"measure":[48],"performance":[50],"sets":[52],"parameters.":[54],"Since":[55],"genomic":[56,234,250],"sequences":[57,95,108,126,155,163,235],"carry":[58,239],"genetic":[59],"information,":[60,240],"this":[61],"article":[62,230],"proposes":[63],"that":[64,144],"content":[67,122,244],"each":[69],"nucleotide":[70],"in":[71,77,116,125],"position":[73],"should":[74],"be":[75,110,200,260],"considered":[76],"alignment.":[79,193,252],"An":[80],"information-theoretic":[81,211],"approach":[82,212],"for":[83,190,206,213,249],"pairwise":[84],"local":[86],"alignment,":[87],"namely":[88],"XMAligner,":[89],"is":[90,118,127,146,216,247],"presented.":[91],"Instead":[92],"comparing":[94],"at":[96,262],"character":[98,225],"level,":[99],"XMAligner":[100,145,160,198],"considers":[101],"pair":[103],"nucleotides":[105,124,246],"from":[106,197],"related":[111,154],"if":[112],"their":[113],"mutual":[114],"context":[117],"significant.":[119],"The":[120,194,210,229],"measured":[128],"lossless":[131],"compression":[132],"technique.":[133],"RESULTS:":[134],"Experiments":[135],"on":[136,152],"both":[137],"simulated":[138],"data":[139,142,258],"real":[141],"show":[143],"superior":[147],"conventional":[149,224],"especially":[151],"distantly":[153],"statistically":[157],"biased":[158],"data.":[159],"can":[161,182,199,259],"align":[162],"eukaryote":[165],"size":[167],"only":[169],"modest":[171],"hardware":[172],"requirement.":[173],"Importantly,":[174],"method":[176],"has":[177],"an":[178],"which":[181],"obviate":[183],"need":[185],"choose":[187],"parameter":[188],"values":[189],"high":[191],"quality":[192],"results":[196],"integrated":[201],"into":[202],"visualisation":[204],"tool":[205],"viewing":[207],"purpose.":[208],"CONCLUSIONS:":[209],"shown":[217],"overcome":[219],"mentioned":[221],"problems":[222],"methods.":[228],"shows":[231],"that,":[232],"meant":[237],"considering":[241],"helpful":[248],"AVAILABILITY:":[253],"Downloadable":[254],"binaries,":[255],"documentation":[256],"found":[261],"ftp://ftp.infotech.monash.edu.au/software/DNAcompress-XM/XMAligner/.":[263]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
