{"id":"https://openalex.org/W2053940732","doi":"https://doi.org/10.1186/1471-2105-11-595","title":"BIGSdb: Scalable analysis of bacterial genome variation at the population level","display_name":"BIGSdb: Scalable analysis of bacterial genome variation at the population level","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2053940732","doi":"https://doi.org/10.1186/1471-2105-11-595","mag":"2053940732","pmid":"https://pubmed.ncbi.nlm.nih.gov/21143983"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-595","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-595","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-11-595.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-11-595.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043485383","display_name":"Keith A. Jolley","orcid":"https://orcid.org/0000-0002-0751-0287"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Keith A Jolley","raw_affiliation_strings":["Department of Zoology, University of Oxford, UK. keith.jolley@zoo.ox.ac.uk","Department of Zoology, University of Oxford, Oxford,#R#                    UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, UK. keith.jolley@zoo.ox.ac.uk","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford,#R#                    UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083239509","display_name":"Martin Maiden","orcid":"https://orcid.org/0000-0001-6321-5138"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin CJ Maiden","raw_affiliation_strings":["Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK","Department of Zoology, University of Oxford, Oxford,#R#                    UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford,#R#                    UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5043485383"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":31.8955,"has_fulltext":true,"cited_by_count":2459,"citation_normalized_percentile":{"value":0.99947202,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"595","last_page":"595"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.5281999707221985,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.5281999707221985,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12499","display_name":"Diphtheria, Corynebacterium, and Tetanus","score":0.057100001722574234,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.050599999725818634,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multilocus-sequence-typing","display_name":"Multilocus sequence typing","score":0.5719823241233826},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5403388738632202},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.533616304397583},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5304362773895264},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5234512686729431},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5188009142875671},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47231197357177734},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46013087034225464},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4475001394748688},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4245697259902954},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4243074059486389},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.4185047447681427},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38760343194007874},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3110480308532715},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.1693737804889679},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10171645879745483}],"concepts":[{"id":"https://openalex.org/C77434933","wikidata":"https://www.wikidata.org/wiki/Q4043440","display_name":"Multilocus sequence typing","level":4,"score":0.5719823241233826},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5403388738632202},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.533616304397583},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5304362773895264},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5234512686729431},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5188009142875671},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47231197357177734},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46013087034225464},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4475001394748688},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4245697259902954},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4243074059486389},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.4185047447681427},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38760343194007874},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3110480308532715},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.1693737804889679},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10171645879745483},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-595","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-595","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-11-595.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21143983","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21143983","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:4fd0d6c38959424caef2b8c8909f9938","is_oa":true,"landing_page_url":"https://doaj.org/article/4fd0d6c38959424caef2b8c8909f9938","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 595 (2010)","raw_type":"article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:a4f29613-19f1-4963-b048-c592569bfda2","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:a4f29613-19f1-4963-b048-c592569bfda2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PubMed (http://www.ncbi.nlm.nih.gov/pubmed/)","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3004885","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3004885","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-595","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-595","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-11-595.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G6382796398","display_name":"Population genomics of the Neisseria: evolution of commensalism and virulence.","funder_award_id":"087622","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2053940732.pdf","grobid_xml":"https://content.openalex.org/works/W2053940732.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1481961820","https://openalex.org/W1536270671","https://openalex.org/W1965150875","https://openalex.org/W1980030331","https://openalex.org/W1984345785","https://openalex.org/W1984702361","https://openalex.org/W1989512904","https://openalex.org/W1991330646","https://openalex.org/W1996423252","https://openalex.org/W1999417916","https://openalex.org/W2002114667","https://openalex.org/W2005058616","https://openalex.org/W2009320470","https://openalex.org/W2012884498","https://openalex.org/W2026275325","https://openalex.org/W2030377425","https://openalex.org/W2033169817","https://openalex.org/W2049628926","https://openalex.org/W2051727227","https://openalex.org/W2061656750","https://openalex.org/W2064641442","https://openalex.org/W2073967559","https://openalex.org/W2089290086","https://openalex.org/W2092343047","https://openalex.org/W2095909724","https://openalex.org/W2098126593","https://openalex.org/W2104382008","https://openalex.org/W2110397906","https://openalex.org/W2111047995","https://openalex.org/W2114034054","https://openalex.org/W2115542536","https://openalex.org/W2116901163","https://openalex.org/W2128784468","https://openalex.org/W2130956021","https://openalex.org/W2132560348","https://openalex.org/W2132606647","https://openalex.org/W2134606926","https://openalex.org/W2142503351","https://openalex.org/W2145282362","https://openalex.org/W2146700947","https://openalex.org/W2149652290","https://openalex.org/W2150934173","https://openalex.org/W2152895327","https://openalex.org/W2155385726","https://openalex.org/W2155705049","https://openalex.org/W2156273926","https://openalex.org/W2157630713","https://openalex.org/W2157991545","https://openalex.org/W2158685996","https://openalex.org/W2158714788","https://openalex.org/W2160969485","https://openalex.org/W2164466614","https://openalex.org/W2165471800","https://openalex.org/W2166642025","https://openalex.org/W2168298398","https://openalex.org/W2170302416","https://openalex.org/W2608654275","https://openalex.org/W6646306493"],"related_works":["https://openalex.org/W2941777425","https://openalex.org/W2132072542","https://openalex.org/W2030437188","https://openalex.org/W2145001255","https://openalex.org/W1898047497","https://openalex.org/W1989895641","https://openalex.org/W2467039083","https://openalex.org/W2128247100","https://openalex.org/W4387902646","https://openalex.org/W2149356504"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,47,94,193],"opportunities":[2],"for":[3,87,104,146,150,269],"bacterial":[4,92,256],"population":[5,300],"genomics":[6,301],"that":[7,62,280],"are":[8,195,231,244],"being":[9],"realised":[10],"by":[11,161,214,296],"the":[12,27,98,105,117,134,183,223,227,234,283,287,290],"application":[13],"of":[14,26,32,91,109,125,167,175,182,190,204,226,229,289,294,298],"parallel":[15],"nucleotide":[16,136],"sequencing":[17],"require":[18],"novel":[19],"bioinformatics":[20],"platforms.":[21],"These":[22,138],"must":[23],"be":[24,84,141,159,171,252,266],"capable":[25],"storage,":[28],"retrieval,":[29],"and":[30,35,42,68,107,115,121,127,156,164,178,188,201,237,242,292],"analysis":[31],"linked":[33,86,197],"phenotypic":[34],"genotypic":[36],"information":[37],"in":[38,211,258,286],"an":[39],"accessible,":[40],"scalable":[41],"computationally":[43],"efficient":[44],"manner.":[45],"RESULTS:":[46],"Bacterial":[48],"Isolate":[49],"Genome":[50],"Sequence":[51],"Database":[52],"(BIGSDB)":[53],"is":[54],"a":[55,75,88,276,299],"scalable,":[56],"open":[57],"source,":[58],"web-accessible":[59],"database":[60],"system":[61,95],"meets":[63],"these":[64],"needs,":[65],"enabling":[66,173],"phenotype":[67],"sequence":[69,77,111],"data,":[70,82,114],"which":[71],"can":[72,140,158,170,251,264],"range":[73],"from":[74],"single":[76],"read":[78],"to":[79,83,119,187,198,209,219,254],"whole":[80],"genome":[81],"efficiently":[85,267],"limitless":[89],"number":[90,124,166],"specimens.":[93],"builds":[96],"on":[97],"widely":[99],"used":[100,253],"mlstdbNet":[101],"software,":[102],"developed":[103],"storage":[106],"distribution":[108],"multilocus":[110],"typing":[112],"(MLST)":[113],"incorporates":[116],"capacity":[118],"define":[120],"identify":[122],"any":[123,165],"loci":[126,132,139,157],"genetic":[128],"variants":[129],"at":[130,246],"those":[131],"within":[133,222],"stored":[135],"sequences.":[137],"further":[142],"organised":[143],"into":[144],"'schemes'":[145],"isolate":[147],"characterisation":[148],"or":[149,152,217,271],"evolutionary":[151,270],"functional":[153,272],"analyses.":[154],"Isolates":[155],"indexed":[160],"multiple":[162,207],"names":[163],"alternative":[168],"schemes":[169,221],"accommodated,":[172],"cross-referencing":[174],"different":[176,220,260],"studies":[177],"approaches.":[179],"LIMS":[180],"functionality":[181],"software":[184],"enables":[185],"linkage":[186],"organisation":[189],"laboratory":[191],"samples.":[192],"data":[194,250],"easily":[196],"external":[199],"databases":[200],"fine-grained":[202],"authentication":[203],"access":[205],"permits":[206],"users":[208],"participate":[210],"community":[212,285],"annotation":[213],"setting":[215],"up":[216],"contributing":[218],"database.":[224],"Some":[225],"applications":[228],"BIGSDB":[230,239,274],"illustrated":[232],"with":[233],"genera":[235],"Neisseria":[236],"Streptococcus.The":[238],"source":[240],"code":[241],"documentation":[243],"available":[245,278],"http://pubmlst.org/software/database/bigsdb/.":[247],"CONCLUSIONS:":[248],"Genomic":[249],"characterise":[255],"isolates":[257],"many":[259],"ways":[261],"but":[262],"it":[263],"also":[265],"exploited":[268],"studies.":[273],"represents":[275],"freely":[277],"resource":[279],"will":[281],"assist":[282],"broader":[284],"elucidation":[288],"structure":[291],"function":[293],"bacteria":[295],"means":[297],"approach.":[302]},"counts_by_year":[{"year":2026,"cited_by_count":103},{"year":2025,"cited_by_count":184},{"year":2024,"cited_by_count":183},{"year":2023,"cited_by_count":193},{"year":2022,"cited_by_count":169},{"year":2021,"cited_by_count":184},{"year":2020,"cited_by_count":199},{"year":2019,"cited_by_count":234},{"year":2018,"cited_by_count":243},{"year":2017,"cited_by_count":203},{"year":2016,"cited_by_count":186},{"year":2015,"cited_by_count":118},{"year":2014,"cited_by_count":107},{"year":2013,"cited_by_count":75},{"year":2012,"cited_by_count":56}],"updated_date":"2026-07-17T09:13:05.818461","created_date":"2025-10-10T00:00:00"}