{"id":"https://openalex.org/W2095302347","doi":"https://doi.org/10.1186/1471-2105-11-575","title":"Sampling the conformation of protein surface residues for flexible protein docking","display_name":"Sampling the conformation of protein surface residues for flexible protein docking","publication_year":2010,"publication_date":"2010-11-23","ids":{"openalex":"https://openalex.org/W2095302347","doi":"https://doi.org/10.1186/1471-2105-11-575","mag":"2095302347","pmid":"https://pubmed.ncbi.nlm.nih.gov/21092317"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-575","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-575","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-575","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-575","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063641622","display_name":"Patricia Francis\u2010Lyon","orcid":"https://orcid.org/0000-0001-7186-6600"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Patricia Francis-Lyon","raw_affiliation_strings":["Department of Computer Science and Genome Center, University of California, Davis, CA 95616, USA. koehl@cs.ucdavis.edu","Department of Computer Science, University of California, Davis, USA,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Genome Center, University of California, Davis, CA 95616, USA. koehl@cs.ucdavis.edu","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, USA,","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090770258","display_name":"Shengyin Gu","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shengyin Gu","raw_affiliation_strings":["Department of Computer Science, University of California, Davis, CA, 95616, USA","Department of Computer Science, University of California, Davis, USA,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, CA, 95616, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, USA,","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045681462","display_name":"Joel Hass","orcid":"https://orcid.org/0000-0002-9019-4464"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Hass","raw_affiliation_strings":["Department of Mathematics, University of California, Davis, CA, 95616, USA","[Department of Mathematics, University of California, Davis, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of California, Davis, CA, 95616, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"[Department of Mathematics, University of California, Davis, USA]","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031972964","display_name":"Nina Amenta","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nina Amenta","raw_affiliation_strings":["Department of Computer Science, University of California, Davis, CA, 95616, USA","Department of Computer Science, University of California, Davis, USA,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, CA, 95616, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, USA,","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056170480","display_name":"Patrice Koehl","orcid":"https://orcid.org/0000-0002-0908-068X"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrice Koehl","raw_affiliation_strings":["Department of Computer Science and Genome Center, University of California, Davis, CA, 95616, USA","Department of Computer Science and Genome Center, University of California, Davis, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Genome Center, University of California, Davis, CA, 95616, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Department of Computer Science and Genome Center, University of California, Davis, USA","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5063641622"],"corresponding_institution_ids":["https://openalex.org/I84218800"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.1352,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54541806,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"1","first_page":"575","last_page":"575"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/searching-the-conformational-space-for-docking","display_name":"Searching the conformational space for docking","score":0.7807658910751343},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7020174264907837},{"id":"https://openalex.org/keywords/side-chain","display_name":"Side chain","score":0.5319533348083496},{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.5221545696258545},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4380885362625122},{"id":"https://openalex.org/keywords/dihedral-angle","display_name":"Dihedral angle","score":0.43350550532341003},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4170182943344116},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3915542960166931},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3912399113178253},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3606869578361511},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.13949808478355408},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09328210353851318}],"concepts":[{"id":"https://openalex.org/C44695244","wikidata":"https://www.wikidata.org/wiki/Q7441727","display_name":"Searching the conformational space for docking","level":3,"score":0.7807658910751343},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7020174264907837},{"id":"https://openalex.org/C204921945","wikidata":"https://www.wikidata.org/wiki/Q899689","display_name":"Side chain","level":3,"score":0.5319533348083496},{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.5221545696258545},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4380885362625122},{"id":"https://openalex.org/C89025888","wikidata":"https://www.wikidata.org/wiki/Q911907","display_name":"Dihedral angle","level":4,"score":0.43350550532341003},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4170182943344116},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3915542960166931},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3912399113178253},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3606869578361511},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.13949808478355408},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09328210353851318},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.0},{"id":"https://openalex.org/C112887158","wikidata":"https://www.wikidata.org/wiki/Q169324","display_name":"Hydrogen bond","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019281","descriptor_name":"Dimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019281","descriptor_name":"Dimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019281","descriptor_name":"Dimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-11-575","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-575","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-575","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21092317","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21092317","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:repository.usfca.edu:nursing_fac-1115","is_oa":true,"landing_page_url":"https://repository.usfca.edu/nursing_fac/105","pdf_url":null,"source":{"id":"https://openalex.org/S4377196440","display_name":"USF Scholarship Repository (University of San Francisco)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I76766440","host_organization_name":"University of San Francisco","host_organization_lineage":["https://openalex.org/I76766440"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nursing and Health Professions Faculty Research and Publications","raw_type":"text"},{"id":"pmh:oai:repository.usfca.edu:nursing_fac-1205","is_oa":false,"landing_page_url":"https://repository.usfca.edu/nursing_fac/161","pdf_url":null,"source":{"id":"https://openalex.org/S4377196440","display_name":"USF Scholarship Repository (University of San Francisco)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I76766440","host_organization_name":"University of San Francisco","host_organization_lineage":["https://openalex.org/I76766440"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nursing and Health Professions Faculty Research and Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:24cb06ec8f3e4068b6a9ded56c64db01","is_oa":true,"landing_page_url":"https://doaj.org/article/24cb06ec8f3e4068b6a9ded56c64db01","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 575 (2010)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt94n1f0pv","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/94n1f0pv","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, vol 11, iss 1","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3002368","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3002368","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:qt94n1f0pv","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/94n1f0pv","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Francis-Lyon, Patricia; Gu, Shengyin; Hass, Joel; Amenta, Nina; &amp; Koehl, Patrice. (2010). Sampling the conformation of protein surface residues for flexible protein docking. BMC Bioinformatics, 11(1), 575. doi: http://dx.doi.org/10.1186/1471-2105-11-575. Retrieved from: http://www.escholarship.org/uc/item/94n1f0pv","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-575","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-575","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-575","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.75,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095302347.pdf","grobid_xml":"https://content.openalex.org/works/W2095302347.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1574312817","https://openalex.org/W1964167423","https://openalex.org/W1968922152","https://openalex.org/W1974422922","https://openalex.org/W1984940101","https://openalex.org/W1990137109","https://openalex.org/W1992739911","https://openalex.org/W1997814593","https://openalex.org/W2000443388","https://openalex.org/W2008852962","https://openalex.org/W2009129583","https://openalex.org/W2013238066","https://openalex.org/W2018410079","https://openalex.org/W2021411698","https://openalex.org/W2048643046","https://openalex.org/W2060361607","https://openalex.org/W2073911195","https://openalex.org/W2083995470","https://openalex.org/W2091734240","https://openalex.org/W2095157453","https://openalex.org/W2096259534","https://openalex.org/W2115879729","https://openalex.org/W2118459915","https://openalex.org/W2118542302","https://openalex.org/W2130479394","https://openalex.org/W2131601890","https://openalex.org/W2133712572","https://openalex.org/W2138227733","https://openalex.org/W2142094837","https://openalex.org/W2152872596","https://openalex.org/W2153731681","https://openalex.org/W2153983456","https://openalex.org/W2154652267","https://openalex.org/W2162166182","https://openalex.org/W2162502996","https://openalex.org/W2162682281","https://openalex.org/W2166317516","https://openalex.org/W2915344963"],"related_works":["https://openalex.org/W2148970764","https://openalex.org/W2011402683","https://openalex.org/W2079298303","https://openalex.org/W2064314890","https://openalex.org/W2279302736","https://openalex.org/W4280529929","https://openalex.org/W2031982772","https://openalex.org/W2166317516","https://openalex.org/W1974422922","https://openalex.org/W4309353019"],"abstract_inverted_index":{"Using":[0],"a":[1,117],"database":[2],"of":[3,13,49,65,81,92,103,111,126],"protein":[4],"dimers":[5],"for":[6,31,56],"which":[7],"the":[8,14,22,35,66,82,104,127,134,138],"bound":[9,36,67,83,128,135],"and":[10,58,74],"unbound":[11,23,139],"structures":[12],"monomers":[15],"are":[16,26,52,62,70,76,98],"known,":[17],"we":[18,25,51,115],"show":[19],"that":[20,33,61,88,119],"from":[21],"patch":[24],"able":[27,53,99],"to":[28,54,100,133],"generate":[29,59],"candidates":[30,60,97],"docking":[32],"approximate":[34],"structure.":[37],"In":[38],"patches":[39,114],"where":[40],"backbone":[41,94],"change":[42],"is":[43,120,131],"small":[44],"(within":[45],"1":[46,72,123],"\u00c5":[47,73,79,124],"RMSD":[48,80,125],"bound),":[50],"account":[55],"flexibility":[57,95],"good":[63],"approximations":[64],"state":[68,136],"(82%":[69],"within":[71,77,122],"98%":[75],"1.4":[78],"conformation).":[84],"We":[85],"also":[86],"find":[87],"even":[89],"in":[90,109],"cases":[91],"moderate":[93],"our":[96],"capture":[101],"some":[102],"overall":[105],"shape":[106],"change.":[107],"Overall,":[108],"650":[110],"700":[112],"test":[113],"produce":[116],"candidate":[118],"either":[121],"conformation":[129],"or":[130],"closer":[132],"than":[137],"is.":[140]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
