{"id":"https://openalex.org/W2101900454","doi":"https://doi.org/10.1186/1471-2105-11-56","title":"Biana: a software framework for compiling biological interactions and analyzing networks","display_name":"Biana: a software framework for compiling biological interactions and analyzing networks","publication_year":2010,"publication_date":"2010-01-27","ids":{"openalex":"https://openalex.org/W2101900454","doi":"https://doi.org/10.1186/1471-2105-11-56","mag":"2101900454","pmid":"https://pubmed.ncbi.nlm.nih.gov/20105306"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-56","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-56","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-56","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-56","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038679061","display_name":"Javier Garc\u0131\u0301a-Garc\u0131\u0301a","orcid":"https://orcid.org/0000-0001-9539-2606"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Javier Garcia-Garcia","raw_affiliation_strings":["Structural Bioinformatics Lab, Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine, Barcelona, Catalonia, Spain","Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab, Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine, Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I2801864671","https://openalex.org/I170486558"]},{"raw_affiliation_string":"Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I2801864671","https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005406523","display_name":"Emre G\u00fcney","orcid":"https://orcid.org/0000-0002-3466-6535"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Emre Guney","raw_affiliation_strings":["Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I2801864671","https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005359314","display_name":"Ram\u00f3n Arag\u00fc\u00e9s","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ramon Aragues","raw_affiliation_strings":["Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I2801864671","https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081228191","display_name":"Joan Planas-Iglesias","orcid":"https://orcid.org/0000-0002-6279-2483"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Joan Planas-Iglesias","raw_affiliation_strings":["Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I2801864671","https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111840557","display_name":"Baldo Oliva","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Baldo Oliva","raw_affiliation_strings":["Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab. (GRIB), Universitat Pompeu Fabra-IMIM. Barcelona Research Park of Biomedicine (PRBB). 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I2801864671","https://openalex.org/I170486558"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5111840557"],"corresponding_institution_ids":["https://openalex.org/I170486558","https://openalex.org/I2801864671"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.2678,"has_fulltext":true,"cited_by_count":91,"citation_normalized_percentile":{"value":0.92479995,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"56","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.843999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.843999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.12370000034570694,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7783944606781006},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.6327188611030579},{"id":"https://openalex.org/keywords/unification","display_name":"Unification","score":0.6306664943695068},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6253837943077087},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.609745442867279},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5503845810890198},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5021669864654541},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4919554889202118},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4684799909591675},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.46490514278411865},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4643305838108063},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34523311257362366},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32923609018325806},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17648857831954956},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15154096484184265}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7783944606781006},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.6327188611030579},{"id":"https://openalex.org/C96146094","wikidata":"https://www.wikidata.org/wiki/Q609057","display_name":"Unification","level":2,"score":0.6306664943695068},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6253837943077087},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.609745442867279},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5503845810890198},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5021669864654541},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4919554889202118},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4684799909591675},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.46490514278411865},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4643305838108063},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34523311257362366},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32923609018325806},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17648857831954956},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15154096484184265},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-56","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-56","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-56","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20105306","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20105306","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:repositori.upf.edu:10230/16425","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/16425","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:610a191498714cb185bd1d034b313b54","is_oa":false,"landing_page_url":"https://doaj.org/article/610a191498714cb185bd1d034b313b54","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 56 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3098100","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3098100","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-56","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-56","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-56","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101900454.pdf","grobid_xml":"https://content.openalex.org/works/W2101900454.grobid-xml"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W1954244449","https://openalex.org/W1963640549","https://openalex.org/W1965327593","https://openalex.org/W1970759948","https://openalex.org/W1971425971","https://openalex.org/W1973316812","https://openalex.org/W1981722424","https://openalex.org/W1992956789","https://openalex.org/W1996995735","https://openalex.org/W1999895438","https://openalex.org/W2002107667","https://openalex.org/W2006933206","https://openalex.org/W2014905048","https://openalex.org/W2020291960","https://openalex.org/W2026927520","https://openalex.org/W2030033908","https://openalex.org/W2036169332","https://openalex.org/W2037442572","https://openalex.org/W2038018821","https://openalex.org/W2038586266","https://openalex.org/W2044505913","https://openalex.org/W2048093274","https://openalex.org/W2051795211","https://openalex.org/W2054414232","https://openalex.org/W2065304353","https://openalex.org/W2076409812","https://openalex.org/W2079596643","https://openalex.org/W2085713923","https://openalex.org/W2095956310","https://openalex.org/W2096525273","https://openalex.org/W2097698606","https://openalex.org/W2097771645","https://openalex.org/W2099844978","https://openalex.org/W2100025044","https://openalex.org/W2103017472","https://openalex.org/W2106323366","https://openalex.org/W2106946808","https://openalex.org/W2110280725","https://openalex.org/W2113613985","https://openalex.org/W2114228709","https://openalex.org/W2117364474","https://openalex.org/W2117513900","https://openalex.org/W2118128448","https://openalex.org/W2121905803","https://openalex.org/W2122863289","https://openalex.org/W2123329045","https://openalex.org/W2125725297","https://openalex.org/W2129996459","https://openalex.org/W2130687290","https://openalex.org/W2130863229","https://openalex.org/W2132022337","https://openalex.org/W2137531873","https://openalex.org/W2137635996","https://openalex.org/W2145889895","https://openalex.org/W2146895097","https://openalex.org/W2147736120","https://openalex.org/W2147956103","https://openalex.org/W2149194035","https://openalex.org/W2150934340","https://openalex.org/W2152960199","https://openalex.org/W2155606054","https://openalex.org/W2156070536","https://openalex.org/W2156125289","https://openalex.org/W2158714788","https://openalex.org/W2159460045","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2161062388","https://openalex.org/W2162379361","https://openalex.org/W2163485494","https://openalex.org/W2164813401","https://openalex.org/W2166043581","https://openalex.org/W2167869241","https://openalex.org/W2616543068","https://openalex.org/W4211083314","https://openalex.org/W4231041617","https://openalex.org/W4242134579","https://openalex.org/W4244148717","https://openalex.org/W4255852734","https://openalex.org/W4401946675"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W2307569040","https://openalex.org/W2101315668","https://openalex.org/W2120890012","https://openalex.org/W4283723149","https://openalex.org/W2541393756","https://openalex.org/W2286239702","https://openalex.org/W2131941936","https://openalex.org/W782572168"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,178,224],"analysis":[2],"and":[3,18,26,42,62,71,80,106,109,123,133,162,219],"usage":[4],"of":[5,13,44,59,97,100,113,131,197],"biological":[6,77,101,104,114,206],"data":[7,37,61,193,217,222],"is":[8,32,52,84,149,175],"hindered":[9],"by":[10,22,140],"the":[11,19,40,56,95,111,165,198],"spread":[12],"information":[14,78,115],"across":[15],"multiple":[16,98],"repositories":[17,218],"difficulties":[20],"posed":[21],"different":[23,236],"nomenclature":[24,199],"systems":[25,203],"storage":[27],"formats.":[28],"In":[29],"particular,":[30],"there":[31],"an":[33],"important":[34],"need":[35],"for":[36,76,155,235],"unification":[38,194,225,245,255],"in":[39],"study":[41],"use":[43,242],"protein-protein":[45],"interactions.":[46],"Without":[47],"good":[48],"integration":[49,79,96],"strategies,":[50],"it":[51],"difficult":[53],"to":[54,89,135,143,160,170,192,202,213,229],"analyze":[55],"whole":[57],"set":[58],"available":[60],"its":[63],"properties.":[64,147],"RESULTS:":[65],"We":[66],"introduce":[67],"BIANA":[68,83,128,148,171,208,228],"(Biologic":[69],"Interactions":[70],"Network":[72],"Analysis),":[73],"a":[74,85,117,153,231,243],"tool":[75,233],"network":[81,118],"management.":[82],"Python":[86],"framework":[87],"designed":[88],"achieve":[90],"two":[91],"major":[92],"goals:":[93],"i)":[94],"sources":[99],"information,":[102],"including":[103],"entities":[105,120,144],"their":[107,252],"relationships,":[108],"ii)":[110],"management":[112],"as":[116,152],"where":[119],"are":[121,125],"nodes":[122],"relationships":[124,139],"edges.":[126],"Moreover,":[127],"uses":[129],"properties":[130],"proteins":[132],"genes":[134],"infer":[136],"latent":[137],"biomolecular":[138],"transferring":[141],"edges":[142],"sharing":[145],"similar":[146],"also":[150,176],"provided":[151],"plugin":[154],"Cytoscape,":[156],"which":[157],"allows":[158,227],"users":[159,240,249],"visualize":[161],"interactively":[163],"manage":[164],"data.":[166,207],"A":[167],"web":[168],"interface":[169],"providing":[172],"basic":[173],"functionalities":[174],"available.":[177],"software":[179],"can":[180,209,241,250],"be":[181,211,230],"downloaded":[182],"under":[183],"GNU":[184],"GPL":[185],"license":[186],"from":[187],"http://sbi.imim.es/web/BIANA.php.":[188],"CONCLUSIONS:":[189],"BIANA's":[190],"approach":[191],"solves":[195],"many":[196],"issues":[200],"common":[201],"dealing":[204],"with":[205],"easily":[210],"extended":[212],"handle":[214],"new":[215,220],"specific":[216,221,254],"types.":[223],"protocol":[226,246],"flexible":[232],"suitable":[234],"user":[237],"requirements:":[238],"non-expert":[239],"suggested":[244],"while":[247],"expert":[248],"define":[251],"own":[253],"rules.":[256]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":12}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
