{"id":"https://openalex.org/W2043035462","doi":"https://doi.org/10.1186/1471-2105-11-552","title":"Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies","display_name":"Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies","publication_year":2010,"publication_date":"2010-11-09","ids":{"openalex":"https://openalex.org/W2043035462","doi":"https://doi.org/10.1186/1471-2105-11-552","mag":"2043035462","pmid":"https://pubmed.ncbi.nlm.nih.gov/21062443"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-552","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-552","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-552","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-552","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100427353","display_name":"Bo Chen","orcid":"https://orcid.org/0000-0002-5777-6876"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bo Chen","raw_affiliation_strings":["Electrical and Computer Engineering Department, Duke University, Durham, NC, USA","Electrical and Computer Engineering Department, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036399590","display_name":"Minhua Chen","orcid":"https://orcid.org/0000-0003-0513-1301"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Minhua Chen","raw_affiliation_strings":["Electrical and Computer Engineering Department, Duke University, Durham, NC, USA","Electrical and Computer Engineering Department, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110662445","display_name":"John Paisley","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Paisley","raw_affiliation_strings":["Electrical and Computer Engineering Department, Duke University, Durham, NC, USA","Electrical and Computer Engineering Department, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001279279","display_name":"Aimee K. Zaas","orcid":"https://orcid.org/0000-0003-2718-915X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aimee Zaas","raw_affiliation_strings":["Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, NC, USA","Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101450324","display_name":"Christopher W. Woods","orcid":"https://orcid.org/0000-0001-9841-6183"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Woods","raw_affiliation_strings":["Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, NC, USA","Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078788092","display_name":"Geoffrey S Ginsburg","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Geoffrey S Ginsburg","raw_affiliation_strings":["Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, NC, USA","Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077692655","display_name":"Alfred O. Hero","orcid":"https://orcid.org/0000-0002-2531-9670"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alfred Hero","raw_affiliation_strings":["Electrical & Computer Engineering Department, University of Michigan, Ann Arbor, MI, USA","Electrical and Computer Engineering Department, University of Michigan, Ann Arbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical & Computer Engineering Department, University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, University of Michigan, Ann Arbor, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027324518","display_name":"Joseph E. Lucas","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Lucas","raw_affiliation_strings":["Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, NC, USA","Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Institute for Genome Sciences & Policy, Department of Medicine Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108072328","display_name":"David B. Dunson","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Dunson","raw_affiliation_strings":["Statistics Department, Duke University, Durham, NC, USA","Statistics Department, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Statistics Department, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Statistics Department, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016448581","display_name":"Lawrence Carin","orcid":"https://orcid.org/0000-0001-6277-7948"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lawrence Carin","raw_affiliation_strings":["Electrical and Computer Engineering Department, Duke University, Durham, NC, USA","Electrical and Computer Engineering Department, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5100427353"],"corresponding_institution_ids":["https://openalex.org/I170897317"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.6582,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.95362235,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"552","last_page":"552"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.2517000138759613,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.2517000138759613,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.2500999867916107,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.23319999873638153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.6157864332199097},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5239241719245911},{"id":"https://openalex.org/keywords/gibbs-sampling","display_name":"Gibbs sampling","score":0.5205832123756409},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5147221684455872},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.5031720995903015},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.47759008407592773},{"id":"https://openalex.org/keywords/nonparametric-statistics","display_name":"Nonparametric statistics","score":0.44159752130508423},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4187224507331848},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3678395748138428},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3489501476287842},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33874544501304626},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27084678411483765}],"concepts":[{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.6157864332199097},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5239241719245911},{"id":"https://openalex.org/C158424031","wikidata":"https://www.wikidata.org/wiki/Q1191905","display_name":"Gibbs sampling","level":3,"score":0.5205832123756409},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5147221684455872},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.5031720995903015},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.47759008407592773},{"id":"https://openalex.org/C102366305","wikidata":"https://www.wikidata.org/wiki/Q1097688","display_name":"Nonparametric statistics","level":2,"score":0.44159752130508423},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4187224507331848},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3678395748138428},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3489501476287842},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33874544501304626},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27084678411483765}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012136","descriptor_name":"Respiratory Syncytial Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012136","descriptor_name":"Respiratory Syncytial Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012136","descriptor_name":"Respiratory Syncytial Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012136","descriptor_name":"Respiratory Syncytial Viruses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012136","descriptor_name":"Respiratory Syncytial Viruses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012136","descriptor_name":"Respiratory Syncytial Viruses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012229","descriptor_name":"Rhinovirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012229","descriptor_name":"Rhinovirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012229","descriptor_name":"Rhinovirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018406","descriptor_name":"Virus Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018406","descriptor_name":"Virus Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018406","descriptor_name":"Virus Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-11-552","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-552","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-552","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21062443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21062443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b3e0c6ccd7c94428897addd5986e502b","is_oa":false,"landing_page_url":"https://doaj.org/article/b3e0c6ccd7c94428897addd5986e502b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 552 (2010)","raw_type":"article"},{"id":"pmh:oai:dukespace.lib.duke.edu:10161/4336","is_oa":true,"landing_page_url":"http://hdl.handle.net/10161/4336","pdf_url":null,"source":{"id":"https://openalex.org/S4306400687","display_name":"DukeSpace (Duke University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170897317","host_organization_name":"Duke University","host_organization_lineage":["https://openalex.org/I170897317"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:dukespace.lib.duke.edu:10161/8946","is_oa":false,"landing_page_url":"http://hdl.handle.net/10161/8946","pdf_url":null,"source":{"id":"https://openalex.org/S4306400687","display_name":"DukeSpace (Duke University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170897317","host_organization_name":"Duke University","host_organization_lineage":["https://openalex.org/I170897317"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3098097","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3098097","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-552","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-552","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-552","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2043035462.pdf","grobid_xml":"https://content.openalex.org/works/W2043035462.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W569201136","https://openalex.org/W1517266559","https://openalex.org/W1601740268","https://openalex.org/W1648445109","https://openalex.org/W1783767608","https://openalex.org/W1975900269","https://openalex.org/W1980782084","https://openalex.org/W1982652137","https://openalex.org/W1987532879","https://openalex.org/W2053609837","https://openalex.org/W2067040543","https://openalex.org/W2069869279","https://openalex.org/W2071284784","https://openalex.org/W2077500673","https://openalex.org/W2098290597","https://openalex.org/W2106813372","https://openalex.org/W2115979064","https://openalex.org/W2117111086","https://openalex.org/W2122825543","https://openalex.org/W2124161652","https://openalex.org/W2126658427","https://openalex.org/W2128002512","https://openalex.org/W2135046866","https://openalex.org/W2145686583","https://openalex.org/W2158836830","https://openalex.org/W2166230915","https://openalex.org/W2222156393","https://openalex.org/W2331182131","https://openalex.org/W2595697910","https://openalex.org/W2990138404","https://openalex.org/W4200346838","https://openalex.org/W4285719527","https://openalex.org/W6644246945","https://openalex.org/W6668389078","https://openalex.org/W6675957326","https://openalex.org/W6678592595","https://openalex.org/W6688798447","https://openalex.org/W7038517902"],"related_works":["https://openalex.org/W840335986","https://openalex.org/W2372267530","https://openalex.org/W1517763961","https://openalex.org/W1501929113","https://openalex.org/W2969189870","https://openalex.org/W3015855446","https://openalex.org/W4303857162","https://openalex.org/W3122927555","https://openalex.org/W2965643117","https://openalex.org/W1990075812"],"abstract_inverted_index":{"BACKGROUND:":[0],"Nonparametric":[1],"Bayesian":[2,87,214],"techniques":[3,31,64],"have":[4,235,254],"been":[5],"developed":[6],"recently":[7],"to":[8,17,38,65,151,167,172,223],"extend":[9],"the":[10,19,25,52,56,77,164,168,173,180,184,194,212,217,227,246,275],"sophistication":[11],"of":[12,21,70,139,176,186,197,208,219,241,245,258,265,270],"factor":[13,34,142,169,240],"models,":[14],"allowing":[15],"one":[16],"infer":[18,66,183],"number":[20,69,185,196,218],"appropriate":[22],"factors":[23,187,198,220],"from":[24,41,108,129],"observed":[26],"data.":[27,190,282],"We":[28,234,253],"consider":[29,205],"such":[30,229,271],"for":[32,96,243,267],"sparse":[33],"analysis,":[35],"with":[36,147,261],"application":[37],"gene-expression":[39,92,189,281],"data":[40,93,113,193],"three":[42,117,247],"virus":[43,99],"challenge":[44,118],"studies.":[45],"Particular":[46],"attention":[47],"is":[48,80,199],"placed":[49],"on":[50,76,144],"employing":[51],"Beta":[53,165],"Process":[54,59,166],"(BP),":[55],"Indian":[57],"Buffet":[58],"(IBP),":[60],"and":[61,85,103,153,211,232],"related":[62,159],"sparseness-promoting":[63],"a":[67,177,206,238,256],"proper":[68],"factors.":[71],"The":[72],"posterior":[73],"density":[74],"function":[75],"model":[78],"parameters":[79],"computed":[81],"using":[82,105],"Gibbs":[83],"sampling":[84],"variational":[86],"(VB)":[88],"analysis.":[89],"RESULTS:":[90],"Time-evolving":[91],"are":[94,133],"considered":[95,249],"respiratory":[97],"syncytial":[98],"(RSV),":[100],"Rhino":[101],"virus,":[102],"influenza,":[104],"blood":[106],"samples":[107],"healthy":[109],"human":[110],"subjects.":[111],"These":[112],"were":[114],"acquired":[115],"in":[116,188,201,226,250],"studies,":[119],"each":[120,244],"executed":[121],"after":[122],"receiving":[123],"institutional":[124],"review":[125],"board":[126],"(IRB)":[127],"approval":[128],"Duke":[130],"University.":[131],"Comparisons":[132],"made":[134],"between":[135],"several":[136],"alternative":[137],"means":[138],"per-forming":[140],"nonparametric":[141],"analysis":[143],"these":[145],"data,":[146],"comparisons":[148],"as":[149,230,278],"well":[150],"sparse-PCA":[152,231],"Penalized":[154],"Matrix":[155],"Decomposition":[156],"(PMD),":[157],"closely":[158],"non-Bayesian":[160],"approaches.":[161],"CONCLUSIONS:":[162],"Applying":[163],"scores,":[170],"or":[171],"singular":[174],"values":[175],"pseudo-SVD":[178],"construction,":[179],"proposed":[181,213],"algorithms":[182],"For":[191],"real":[192],"\"true\"":[195],"unknown;":[200],"our":[202],"simulations":[203],"we":[204],"range":[207],"noise":[209],"variances,":[210],"models":[215],"inferred":[216],"accurately":[221],"relative":[222],"other":[224],"methods":[225],"literature,":[228],"PMD.":[233],"also":[236],"identified":[237,255],"\"pan-viral\"":[239],"importance":[242],"viruses":[248,272],"this":[251,262],"study.":[252],"set":[257],"genes":[259],"associated":[260],"pan-viral":[263],"factor,":[264],"interest":[266],"early":[268],"detection":[269],"based":[273],"upon":[274],"host":[276],"response,":[277],"quantified":[279],"via":[280]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
