{"id":"https://openalex.org/W2153606085","doi":"https://doi.org/10.1186/1471-2105-11-531","title":"BALL - biochemical algorithms library 1.3","display_name":"BALL - biochemical algorithms library 1.3","publication_year":2010,"publication_date":"2010-10-25","ids":{"openalex":"https://openalex.org/W2153606085","doi":"https://doi.org/10.1186/1471-2105-11-531","mag":"2153606085","pmid":"https://pubmed.ncbi.nlm.nih.gov/20973958"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-531","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-531","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-531","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-531","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015934308","display_name":"Andreas Hildebrandt","orcid":"https://orcid.org/0000-0003-2180-6516"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Andreas Hildebrandt","raw_affiliation_strings":["Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany. anhi@bioinf.uni-sb.de","Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany. anhi@bioinf.uni-sb.de","institution_ids":["https://openalex.org/I91712215"]},{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005260367","display_name":"Anna Katharina Dehof","orcid":null},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anna Katharina Dehof","raw_affiliation_strings":["Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053129708","display_name":"Alexander Rurainski","orcid":null},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Rurainski","raw_affiliation_strings":["Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084659723","display_name":"Andreas Bertsch","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Bertsch","raw_affiliation_strings":["Center for Bioinformatics T\u00fcbingen, Eberhard-Karls-Universit\u00e4t T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen, Eberhard-Karls-Universit\u00e4t T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078737296","display_name":"Marcel Schumann","orcid":"https://orcid.org/0000-0002-9473-0156"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcel Schumann","raw_affiliation_strings":["Center for Bioinformatics T\u00fcbingen, Eberhard-Karls-Universit\u00e4t T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen, Eberhard-Karls-Universit\u00e4t T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078378799","display_name":"Nora C. Toussaint","orcid":"https://orcid.org/0000-0001-7911-7647"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nora C Toussaint","raw_affiliation_strings":["Center for Bioinformatics T\u00fcbingen, Eberhard-Karls-Universit\u00e4t T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen, Eberhard-Karls-Universit\u00e4t T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105886156","display_name":"Andreas Moll","orcid":null},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Moll","raw_affiliation_strings":["Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004247736","display_name":"Daniel St\u00f6ckel","orcid":null},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel St\u00f6ckel","raw_affiliation_strings":["Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054487026","display_name":"Stefan Nickels","orcid":"https://orcid.org/0000-0003-0415-2354"},"institutions":[{"id":"https://openalex.org/I4210094487","display_name":"Intel (Germany)","ror":"https://ror.org/00m2x0g47","country_code":"DE","type":"company","lineage":["https://openalex.org/I1343180700","https://openalex.org/I4210094487"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Nickels","raw_affiliation_strings":["Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","Intel Visual Computing Institute of Saarland University, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]},{"raw_affiliation_string":"Intel Visual Computing Institute of Saarland University, Germany","institution_ids":["https://openalex.org/I4210094487","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032849513","display_name":"Sabine Mueller","orcid":"https://orcid.org/0000-0001-5184-1254"},"institutions":[{"id":"https://openalex.org/I4210094487","display_name":"Intel (Germany)","ror":"https://ror.org/00m2x0g47","country_code":"DE","type":"company","lineage":["https://openalex.org/I1343180700","https://openalex.org/I4210094487"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sabine C Mueller","raw_affiliation_strings":["Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","Intel Visual Computing Institute of Saarland University, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]},{"raw_affiliation_string":"Intel Visual Computing Institute of Saarland University, Germany","institution_ids":["https://openalex.org/I4210094487","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085594740","display_name":"Hans\u2010Peter Lenhof","orcid":"https://orcid.org/0000-0002-5820-9961"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans-Peter Lenhof","raw_affiliation_strings":["Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Saar, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053621010","display_name":"Oliver Kohlbacher","orcid":"https://orcid.org/0000-0003-1739-4598"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Kohlbacher","raw_affiliation_strings":["Center for Bioinformatics T\u00fcbingen, Eberhard-Karls-Universit\u00e4t T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics T\u00fcbingen, Eberhard-Karls-Universit\u00e4t T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015934308"],"corresponding_institution_ids":["https://openalex.org/I91712215"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.4891,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.89544191,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"531","last_page":"531"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.49470001459121704,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.49470001459121704,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.1867000013589859,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.0551999993622303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7495176792144775},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.647911548614502},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.6042235493659973},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6001869440078735},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5723255276679993},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.5457170009613037},{"id":"https://openalex.org/keywords/ball","display_name":"Ball (mathematics)","score":0.4826270043849945},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.4723335802555084},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4692689776420593},{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.46723538637161255},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.4642994999885559},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.35415709018707275},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2799615263938904},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21591386198997498}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7495176792144775},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.647911548614502},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.6042235493659973},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6001869440078735},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5723255276679993},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.5457170009613037},{"id":"https://openalex.org/C122041747","wikidata":"https://www.wikidata.org/wiki/Q838611","display_name":"Ball (mathematics)","level":2,"score":0.4826270043849945},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.4723335802555084},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4692689776420593},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.46723538637161255},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.4642994999885559},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.35415709018707275},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2799615263938904},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21591386198997498},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-531","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-531","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-531","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20973958","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20973958","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2aaa700e93fc423d933b3bc2925b9539","is_oa":false,"landing_page_url":"https://doaj.org/article/2aaa700e93fc423d933b3bc2925b9539","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 531 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2984589","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2984589","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-531","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-531","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-531","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.75,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G1560004781","display_name":null,"funder_award_id":"SFB 685","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8726821774","display_name":null,"funder_award_id":"SFB 766","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320323322","display_name":"Universit\u00e4t des Saarlandes","ror":"https://ror.org/01jdpyv68"},{"id":"https://openalex.org/F4320335587","display_name":"Intel Visual Computing Institute, Universit\u00e4t des Saarlandes","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153606085.pdf","grobid_xml":"https://content.openalex.org/works/W2153606085.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1969263578","https://openalex.org/W1969598347","https://openalex.org/W1978273076","https://openalex.org/W1984291348","https://openalex.org/W1988376056","https://openalex.org/W2008708467","https://openalex.org/W2020530495","https://openalex.org/W2036651533","https://openalex.org/W2054739661","https://openalex.org/W2063822856","https://openalex.org/W2088065111","https://openalex.org/W2107256353","https://openalex.org/W2119894792","https://openalex.org/W2126242078","https://openalex.org/W2140145408","https://openalex.org/W2147421370","https://openalex.org/W2148121474","https://openalex.org/W2148797284","https://openalex.org/W2150705899","https://openalex.org/W2159010139","https://openalex.org/W2162166182","https://openalex.org/W2164899027","https://openalex.org/W2168667184","https://openalex.org/W2178229580"],"related_works":["https://openalex.org/W2013194361","https://openalex.org/W4309247532","https://openalex.org/W2562353568","https://openalex.org/W189850294","https://openalex.org/W3096946169","https://openalex.org/W2113128227","https://openalex.org/W2144610372","https://openalex.org/W4312114021","https://openalex.org/W4311938462","https://openalex.org/W2121840477"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"Biochemical":[2],"Algorithms":[3],"Library":[4],"(BALL)":[5],"is":[6,142,156,181,209],"a":[7,37,79,95],"comprehensive":[8],"rapid":[9],"application":[10,47],"development":[11,48],"framework":[12],"for":[13,28,119,138,144],"structural":[14,32],"bioinformatics.":[15,33],"It":[16,155],"provides":[17],"an":[18],"extensive":[19],"C++":[20],"class":[21],"library":[22,73],"of":[23,63,82,159,169],"data":[24],"structures":[25],"and":[26,31,56,66,100,111,116,136,152,186],"algorithms":[27,65],"molecular":[29,123,126],"modeling":[30],"Using":[34],"BALL":[35,92,141,180],"as":[36,183],"programming":[38],"toolbox":[39],"does":[40],"not":[41],"only":[42],"allow":[43],"to":[44],"greatly":[45],"reduce":[46],"times":[49],"but":[50],"also":[51],"helps":[52],"in":[53,98],"ensuring":[54],"stability":[55],"correctness":[57],"by":[58,78],"avoiding":[59],"the":[60,72,85,113,162,170,175,190,202],"error-prone":[61],"reimplementation":[62],"complex":[64],"replacing":[67],"them":[68],"with":[69],"calls":[70],"into":[71,201,206],"that":[74],"has":[75,93,198],"been":[76,199],"well-tested":[77],"large":[80],"number":[81],"developers.":[83],"In":[84],"ten":[86],"years":[87],"since":[88],"its":[89],"original":[90],"publication,":[91],"seen":[94],"substantial":[96],"increase":[97],"functionality":[99,110],"numerous":[101],"other":[102],"improvements.":[103],"RESULTS:":[104],"Here,":[105],"we":[106],"discuss":[107],"BALL's":[108],"current":[109],"highlight":[112],"key":[114],"additions":[115],"improvements:":[117],"support":[118,137],"additional":[120],"file":[121],"formats,":[122],"edit-functionality,":[124],"new":[125],"mechanics":[127],"force":[128],"fields,":[129],"novel":[130],"energy":[131],"minimization":[132],"techniques,":[133],"docking":[134],"algorithms,":[135],"cheminformatics.":[139],"CONCLUSIONS:":[140],"available":[143,157,182],"all":[145],"major":[146],"operating":[147],"systems,":[148],"including":[149],"Linux,":[150],"Windows,":[151],"MacOS":[153],"X.":[154],"free":[158],"charge":[160],"under":[161,174],"Lesser":[163],"GNU":[164,176],"Public":[165,177],"License":[166,178],"(LPGL).":[167],"Parts":[168],"code":[171,185],"are":[172],"distributed":[173],"(GPL).":[179],"source":[184],"binary":[187],"packages":[188],"from":[189],"project":[191],"web":[192],"site":[193],"at":[194],"http://www.ball-project.org.":[195],"Recently,":[196],"it":[197],"accepted":[200],"debian":[203],"project;":[204],"integration":[205],"further":[207],"distributions":[208],"currently":[210],"pursued.":[211]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":9}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
