{"id":"https://openalex.org/W2028851433","doi":"https://doi.org/10.1186/1471-2105-11-528","title":"PathEx: a novel multi factors based datasets selector web tool","display_name":"PathEx: a novel multi factors based datasets selector web tool","publication_year":2010,"publication_date":"2010-10-22","ids":{"openalex":"https://openalex.org/W2028851433","doi":"https://doi.org/10.1186/1471-2105-11-528","mag":"2028851433","pmid":"https://pubmed.ncbi.nlm.nih.gov/20969778"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-528","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-528","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-528","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-528","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028843457","display_name":"Eric Bareke","orcid":"https://orcid.org/0000-0003-3928-7160"},"institutions":[{"id":"https://openalex.org/I149768937","display_name":"University of Namur","ror":"https://ror.org/03d1maw17","country_code":"BE","type":"education","lineage":["https://openalex.org/I149768937"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Eric Bareke","raw_affiliation_strings":["Molecular Biology Research Unit, University of Namur - FUNDP, Namur, Belgium. eric.bareke@fundp.ac.be","Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium"],"affiliations":[{"raw_affiliation_string":"Molecular Biology Research Unit, University of Namur - FUNDP, Namur, Belgium. eric.bareke@fundp.ac.be","institution_ids":["https://openalex.org/I149768937"]},{"raw_affiliation_string":"Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium","institution_ids":["https://openalex.org/I149768937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061296087","display_name":"Michael St.Pierre","orcid":"https://orcid.org/0000-0001-6263-5261"},"institutions":[{"id":"https://openalex.org/I149768937","display_name":"University of Namur","ror":"https://ror.org/03d1maw17","country_code":"BE","type":"education","lineage":["https://openalex.org/I149768937"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Michael Pierre","raw_affiliation_strings":["Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium"],"affiliations":[{"raw_affiliation_string":"Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium","institution_ids":["https://openalex.org/I149768937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036982066","display_name":"Anthoula Gaigneaux","orcid":"https://orcid.org/0000-0003-0465-3773"},"institutions":[{"id":"https://openalex.org/I149768937","display_name":"University of Namur","ror":"https://ror.org/03d1maw17","country_code":"BE","type":"education","lineage":["https://openalex.org/I149768937"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Anthoula Gaigneaux","raw_affiliation_strings":["Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium"],"affiliations":[{"raw_affiliation_string":"Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium","institution_ids":["https://openalex.org/I149768937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066281730","display_name":"Bertrand De Meulder","orcid":"https://orcid.org/0000-0002-2108-7657"},"institutions":[{"id":"https://openalex.org/I149768937","display_name":"University of Namur","ror":"https://ror.org/03d1maw17","country_code":"BE","type":"education","lineage":["https://openalex.org/I149768937"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bertrand De Meulder","raw_affiliation_strings":["Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium"],"affiliations":[{"raw_affiliation_string":"Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium","institution_ids":["https://openalex.org/I149768937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073757989","display_name":"Sophie Depiereux","orcid":null},"institutions":[{"id":"https://openalex.org/I149768937","display_name":"University of Namur","ror":"https://ror.org/03d1maw17","country_code":"BE","type":"education","lineage":["https://openalex.org/I149768937"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sophie Depiereux","raw_affiliation_strings":["Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium"],"affiliations":[{"raw_affiliation_string":"Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium","institution_ids":["https://openalex.org/I149768937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078163685","display_name":"Naji Habra","orcid":null},"institutions":[{"id":"https://openalex.org/I149768937","display_name":"University of Namur","ror":"https://ror.org/03d1maw17","country_code":"BE","type":"education","lineage":["https://openalex.org/I149768937"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Naji Habra","raw_affiliation_strings":["Research Center in Information Systems Engineering (PReCISE), University of Namur - FUNDP, Namur, Belgium"],"affiliations":[{"raw_affiliation_string":"Research Center in Information Systems Engineering (PReCISE), University of Namur - FUNDP, Namur, Belgium","institution_ids":["https://openalex.org/I149768937"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090302676","display_name":"Eric Depiereux","orcid":null},"institutions":[{"id":"https://openalex.org/I149768937","display_name":"University of Namur","ror":"https://ror.org/03d1maw17","country_code":"BE","type":"education","lineage":["https://openalex.org/I149768937"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Eric Depiereux","raw_affiliation_strings":["Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium"],"affiliations":[{"raw_affiliation_string":"Molecular Biology Research Unit (URBM), University of Namur - FUNDP, Namur, Belgium","institution_ids":["https://openalex.org/I149768937"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5028843457"],"corresponding_institution_ids":["https://openalex.org/I149768937"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5407,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65716159,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"11","issue":"1","first_page":"528","last_page":"528"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.762250542640686},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.6980891227722168},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.5907095670700073},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5782911777496338},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.47976717352867126},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.45847371220588684},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4528917670249939},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32157132029533386},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2921973466873169}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.762250542640686},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.6980891227722168},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.5907095670700073},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5782911777496338},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.47976717352867126},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.45847371220588684},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4528917670249939},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32157132029533386},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2921973466873169},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-528","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-528","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-528","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20969778","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20969778","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.unamur.be:openaire/0f565433-7be5-4286-9bb0-ca55822f93a9","is_oa":true,"landing_page_url":"https://researchportal.unamur.be/en/publications/0f565433-7be5-4286-9bb0-ca55822f93a9","pdf_url":null,"source":{"id":"https://openalex.org/S4406922457","display_name":"Repository of the University of Namur","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bareke, E, Pierre, M, Gaigneaux, A, Meulder, B D, Depiereux, S, Habra, N & Depiereux, E 2010, 'PathEx : A novel multi factors based datasets selector web tool', BMC Bioinformatics, vol. 11, 528. https://doi.org/10.1186/1471-2105-11-528","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:dc2d3af90a9b42cc835beb2704878891","is_oa":true,"landing_page_url":"https://doaj.org/article/dc2d3af90a9b42cc835beb2704878891","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 528 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2978222","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2978222","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-528","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-528","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-528","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.5299999713897705}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335302","display_name":"Universit\u00e9 de Namur","ror":"https://ror.org/03d1maw17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2028851433.pdf","grobid_xml":"https://content.openalex.org/works/W2028851433.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1484872771","https://openalex.org/W1520240761","https://openalex.org/W1524141331","https://openalex.org/W1964071443","https://openalex.org/W1966356232","https://openalex.org/W1985738984","https://openalex.org/W2010502047","https://openalex.org/W2031739742","https://openalex.org/W2044206190","https://openalex.org/W2088853613","https://openalex.org/W2100471807","https://openalex.org/W2107580398","https://openalex.org/W2120303297","https://openalex.org/W2122683221","https://openalex.org/W2128557431","https://openalex.org/W2130542009","https://openalex.org/W2131581981","https://openalex.org/W2132854417","https://openalex.org/W2135827569","https://openalex.org/W2143129697","https://openalex.org/W2144227498","https://openalex.org/W2148454250","https://openalex.org/W2148548556","https://openalex.org/W2148853951","https://openalex.org/W2153348030","https://openalex.org/W2159482845","https://openalex.org/W2161162408","https://openalex.org/W4210241463","https://openalex.org/W4210430020","https://openalex.org/W4210580032","https://openalex.org/W4229899734","https://openalex.org/W4253759977","https://openalex.org/W4294216483","https://openalex.org/W6806866965","https://openalex.org/W6806875027","https://openalex.org/W6816350733"],"related_works":["https://openalex.org/W2379533788","https://openalex.org/W2357241418","https://openalex.org/W2086064646","https://openalex.org/W2119135658","https://openalex.org/W2115485936","https://openalex.org/W3022131925","https://openalex.org/W2360796461","https://openalex.org/W2349174110","https://openalex.org/W2139734723","https://openalex.org/W2051128263"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"PathEx,":[3],"a":[4,10],"human-focused":[5],"web":[6,34],"solution":[7],"built":[8],"around":[9],"two-component":[11],"system:":[12],"one":[13],"database":[14],"component,":[15],"enriched":[16],"with":[17],"relevant":[18],"biological":[19],"information":[20],"(expression":[21],"array,":[22],"omics":[23],"data,":[24],"literature)":[25],"from":[26],"different":[27],"sources,":[28],"and":[29],"another":[30],"component":[31],"comprising":[32],"sophisticated":[33],"interfaces":[35],"that":[36],"allow":[37],"users":[38],"to":[39],"perform":[40],"complex":[41],"dataset":[42],"building":[43],"queries":[44],"on":[45],"the":[46,50],"contents":[47],"integrated":[48],"into":[49],"PathEx":[51],"database.":[52]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}