{"id":"https://openalex.org/W2011989148","doi":"https://doi.org/10.1186/1471-2105-11-518","title":"Accurate peak list extraction from proteomic mass spectra for identification and profiling studies","display_name":"Accurate peak list extraction from proteomic mass spectra for identification and profiling studies","publication_year":2010,"publication_date":"2010-10-16","ids":{"openalex":"https://openalex.org/W2011989148","doi":"https://doi.org/10.1186/1471-2105-11-518","mag":"2011989148","pmid":"https://pubmed.ncbi.nlm.nih.gov/20950483"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-518","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-518","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-518","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-518","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056107988","display_name":"Nicola Barbarini","orcid":null},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Nicola Barbarini","raw_affiliation_strings":["Dipartimento di Informatica e Sistemistica, Universit\u00e0 degli Studi di Pavia, Pavia, Italy. nicola.barbarini@unipv.it","[Dipartimento di Informatica e Sistemistica, Universit\u00e0 degli Studi di Pavia, Pavia, Italy]"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica e Sistemistica, Universit\u00e0 degli Studi di Pavia, Pavia, Italy. nicola.barbarini@unipv.it","institution_ids":["https://openalex.org/I25217355"]},{"raw_affiliation_string":"[Dipartimento di Informatica e Sistemistica, Universit\u00e0 degli Studi di Pavia, Pavia, Italy]","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081448028","display_name":"Paolo Magni","orcid":"https://orcid.org/0000-0002-8931-4676"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Magni","raw_affiliation_strings":["Dipartimento di Informatica e Sistemistica, Universit\u00e0 degli Studi di Pavia, Pavia, Italy","[Dipartimento di Informatica e Sistemistica, Universit\u00e0 degli Studi di Pavia, Pavia, Italy]"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica e Sistemistica, Universit\u00e0 degli Studi di Pavia, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]},{"raw_affiliation_string":"[Dipartimento di Informatica e Sistemistica, Universit\u00e0 degli Studi di Pavia, Pavia, Italy]","institution_ids":["https://openalex.org/I25217355"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5056107988"],"corresponding_institution_ids":["https://openalex.org/I25217355"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4924,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.63042723,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11","issue":"1","first_page":"518","last_page":"518"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6848700642585754},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6839569211006165},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5809353590011597},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4785355031490326},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.47371000051498413},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.43796882033348083},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4119674861431122},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.376811683177948},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3573116958141327},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20236483216285706},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06796851754188538},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.05511277914047241}],"concepts":[{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6848700642585754},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6839569211006165},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5809353590011597},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4785355031490326},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.47371000051498413},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.43796882033348083},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4119674861431122},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.376811683177948},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3573116958141327},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20236483216285706},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06796851754188538},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.05511277914047241},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-518","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-518","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-518","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20950483","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20950483","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8c46f01d7723424382abe6919b922cb2","is_oa":true,"landing_page_url":"https://doaj.org/article/8c46f01d7723424382abe6919b922cb2","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 518 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2967564","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2967564","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-518","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-518","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-518","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7429331252","display_name":null,"funder_award_id":"project","funder_id":"https://openalex.org/F4320331528","funder_display_name":"Ministero dell'Universit\u00e0 e della Ricerca"}],"funders":[{"id":"https://openalex.org/F4320320766","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302"},{"id":"https://openalex.org/F4320322874","display_name":"Universit\u00e0 degli Studi di Pavia","ror":"https://ror.org/00s6t1f81"},{"id":"https://openalex.org/F4320331528","display_name":"Ministero dell'Universit\u00e0 e della Ricerca","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2011989148.pdf","grobid_xml":"https://content.openalex.org/works/W2011989148.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W84108305","https://openalex.org/W1495061682","https://openalex.org/W1519955500","https://openalex.org/W1528113134","https://openalex.org/W1971983473","https://openalex.org/W1972791227","https://openalex.org/W1975622242","https://openalex.org/W1979898390","https://openalex.org/W1981593008","https://openalex.org/W1985419646","https://openalex.org/W1993767621","https://openalex.org/W2001007352","https://openalex.org/W2001841288","https://openalex.org/W2009835186","https://openalex.org/W2011716229","https://openalex.org/W2015840688","https://openalex.org/W2024081693","https://openalex.org/W2028931227","https://openalex.org/W2043256631","https://openalex.org/W2045340003","https://openalex.org/W2058446582","https://openalex.org/W2058952332","https://openalex.org/W2070492278","https://openalex.org/W2073292063","https://openalex.org/W2083714122","https://openalex.org/W2086502504","https://openalex.org/W2087718878","https://openalex.org/W2088366062","https://openalex.org/W2088899342","https://openalex.org/W2091691513","https://openalex.org/W2092905491","https://openalex.org/W2094743790","https://openalex.org/W2102329829","https://openalex.org/W2109606373","https://openalex.org/W2113334864","https://openalex.org/W2115976598","https://openalex.org/W2121612064","https://openalex.org/W2123989476","https://openalex.org/W2126897927","https://openalex.org/W2132166479","https://openalex.org/W2145646861","https://openalex.org/W2147443546","https://openalex.org/W2150827955","https://openalex.org/W2154639585","https://openalex.org/W2168130065","https://openalex.org/W2169182264","https://openalex.org/W2912485311","https://openalex.org/W4251700885"],"related_works":["https://openalex.org/W1488408180","https://openalex.org/W2161444195","https://openalex.org/W2589019771","https://openalex.org/W2360290178","https://openalex.org/W2985540061","https://openalex.org/W2185012154","https://openalex.org/W3005464483","https://openalex.org/W415785311","https://openalex.org/W4252521128","https://openalex.org/W1979675584"],"abstract_inverted_index":{"The":[0],"performances":[1],"of":[2,6,10,31,36,51],"the":[3,7,37,57],"basic":[4],"version":[5],"algorithm":[8],"and":[9,24,44],"its":[11],"optional":[12],"functionalities":[13],"have":[14],"been":[15],"evaluated":[16],"in":[17],"this":[18],"paper":[19],"on":[20],"both":[21],"SELDI-TOF,":[22],"MALDI-TOF":[23],"ESI-FTICR":[25],"ECD":[26],"mass":[27],"spectra.":[28],"Executable":[29],"files":[30],"MassSpec,":[32],"a":[33],"MATLAB":[34],"implementation":[35],"peak":[38],"list":[39],"extraction":[40],"procedure":[41],"for":[42,53],"Windows":[43],"Linux":[45],"systems,":[46],"can":[47],"be":[48],"downloaded":[49],"free":[50],"charge":[52],"nonprofit":[54],"institutions":[55],"from":[56],"following":[58],"web":[59],"site:":[60],"http://aimed11.unipv.it/MassSpec.":[61]},"counts_by_year":[{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
