{"id":"https://openalex.org/W2037608288","doi":"https://doi.org/10.1186/1471-2105-11-499","title":"Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of metabolic syndrome","display_name":"Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of metabolic syndrome","publication_year":2010,"publication_date":"2010-10-07","ids":{"openalex":"https://openalex.org/W2037608288","doi":"https://doi.org/10.1186/1471-2105-11-499","mag":"2037608288","pmid":"https://pubmed.ncbi.nlm.nih.gov/20929581"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-499","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-499","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-499","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-499","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031554670","display_name":"Melissa J. Morine","orcid":null},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Melissa J Morine","raw_affiliation_strings":["Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland"],"affiliations":[{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091646877","display_name":"Jolene McMonagle","orcid":null},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Jolene McMonagle","raw_affiliation_strings":["Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland"],"affiliations":[{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066488338","display_name":"Sin\u00e9ad Toomey","orcid":"https://orcid.org/0000-0002-1365-8173"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Sinead Toomey","raw_affiliation_strings":["Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland"],"affiliations":[{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018662286","display_name":"Clare M. Reynolds","orcid":"https://orcid.org/0000-0001-5782-6303"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Clare M Reynolds","raw_affiliation_strings":["Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland"],"affiliations":[{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109480209","display_name":"A. P. Moloney","orcid":null},"institutions":[{"id":"https://openalex.org/I141766778","display_name":"Teagasc - The Irish Agriculture and Food Development Authority","ror":"https://ror.org/03sx84n71","country_code":"IE","type":"facility","lineage":["https://openalex.org/I141766778"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Aidan P Moloney","raw_affiliation_strings":["Teagasc, Animal and Grassland Research and Innovation Centre, Grange, Dunsany, County Meath, Ireland","Teagasc Animal and Grassland Research and Innovation Centre, Grange, Dunsany, County Meath, Ireland"],"affiliations":[{"raw_affiliation_string":"Teagasc, Animal and Grassland Research and Innovation Centre, Grange, Dunsany, County Meath, Ireland","institution_ids":["https://openalex.org/I141766778"]},{"raw_affiliation_string":"Teagasc Animal and Grassland Research and Innovation Centre, Grange, Dunsany, County Meath, Ireland","institution_ids":["https://openalex.org/I141766778"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033957848","display_name":"Isobel Claire Gormley","orcid":"https://orcid.org/0000-0001-7713-681X"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Isobel C Gormley","raw_affiliation_strings":["School of Mathematical Sciences, University College Dublin, Dublin 4, Belfield, Ireland","School of Mathematical Sciences, University College Dublin, Belfield, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, University College Dublin, Dublin 4, Belfield, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"School of Mathematical Sciences, University College Dublin, Belfield, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037882005","display_name":"Peadar \u00d3 Gaora","orcid":"https://orcid.org/0000-0002-6417-7054"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Peadar \u00d3 Gaora","raw_affiliation_strings":["UCD School of Medicine and Medical Sciences, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","UCD School of Medicine and Medical Sciences, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland"],"affiliations":[{"raw_affiliation_string":"UCD School of Medicine and Medical Sciences, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"UCD School of Medicine and Medical Sciences, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023335967","display_name":"Helen M. Roche","orcid":"https://orcid.org/0000-0002-0628-3318"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Helen M Roche","raw_affiliation_strings":["Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland"],"affiliations":[{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Nutrigenomics Research Group, School of Public Health, UCD Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Ireland","institution_ids":["https://openalex.org/I100930933"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5031554670"],"corresponding_institution_ids":["https://openalex.org/I100930933"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.3162,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.81999132,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"499","last_page":"499"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12465","display_name":"Cancer, Lipids, and Metabolism","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12465","display_name":"Cancer, Lipids, and Metabolism","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11072","display_name":"Peroxisome Proliferator-Activated Receptors","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11629","display_name":"Birth, Development, and Health","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6917200684547424},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6336697340011597},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.63121497631073},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.616746723651886},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.615405261516571},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6109849214553833},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5508277416229248},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.46386852860450745},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4006202220916748},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.26833510398864746}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6917200684547424},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6336697340011597},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.63121497631073},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.616746723651886},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.615405261516571},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6109849214553833},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5508277416229248},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.46386852860450745},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4006202220916748},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.26833510398864746}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004032","descriptor_name":"Diet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004032","descriptor_name":"Diet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004032","descriptor_name":"Diet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D024821","descriptor_name":"Metabolic Syndrome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024821","descriptor_name":"Metabolic Syndrome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024821","descriptor_name":"Metabolic Syndrome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-11-499","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-499","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-499","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20929581","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20929581","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:36c18c5404f44582b3f262d7587e868b","is_oa":true,"landing_page_url":"https://doaj.org/article/36c18c5404f44582b3f262d7587e868b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 499 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3098081","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3098081","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:t-stor.teagasc.ie:11019/230","is_oa":true,"landing_page_url":"http://hdl.handle.net/11019/230","pdf_url":null,"source":{"id":"https://openalex.org/S4306402356","display_name":"T-St\u00f3r (Teagasc)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I141766778","host_organization_name":"Teagasc - The Irish Agriculture and Food Development Authority","host_organization_lineage":["https://openalex.org/I141766778"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:www.lenus.ie:10147/237476","is_oa":false,"landing_page_url":"http://hdl.handle.net/10147/237476","pdf_url":null,"source":{"id":"https://openalex.org/S4306401756","display_name":"Lenus, The Irish Health Repository (Dr Steevens Hospital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-499","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-499","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-499","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G726554027","display_name":null,"funder_award_id":"IRCSET","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320314110","display_name":"Food Institutional Research Measure","ror":null},{"id":"https://openalex.org/F4320320842","display_name":"Irish Research Council for Science, Engineering and Technology","ror":"https://ror.org/051xex213"},{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2037608288.pdf","grobid_xml":"https://content.openalex.org/works/W2037608288.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W32298042","https://openalex.org/W1533335653","https://openalex.org/W1546952499","https://openalex.org/W1609815973","https://openalex.org/W1973614663","https://openalex.org/W2013182077","https://openalex.org/W2017634446","https://openalex.org/W2025341678","https://openalex.org/W2035478893","https://openalex.org/W2043675751","https://openalex.org/W2048363111","https://openalex.org/W2059152510","https://openalex.org/W2060449981","https://openalex.org/W2086084865","https://openalex.org/W2089663037","https://openalex.org/W2097534751","https://openalex.org/W2102919818","https://openalex.org/W2103714496","https://openalex.org/W2105022693","https://openalex.org/W2107732097","https://openalex.org/W2109219969","https://openalex.org/W2110065044","https://openalex.org/W2112204146","https://openalex.org/W2125980510","https://openalex.org/W2138255346","https://openalex.org/W2138486337","https://openalex.org/W2145461726","https://openalex.org/W2153452513","https://openalex.org/W2156820624","https://openalex.org/W2157106854","https://openalex.org/W2159835316","https://openalex.org/W2159959613","https://openalex.org/W2160234571","https://openalex.org/W2165015714","https://openalex.org/W2319200319","https://openalex.org/W4242508986"],"related_works":["https://openalex.org/W2041540252","https://openalex.org/W2796636403","https://openalex.org/W2415545834","https://openalex.org/W1547158732","https://openalex.org/W3203113381","https://openalex.org/W170658859","https://openalex.org/W1483316219","https://openalex.org/W4310366902","https://openalex.org/W3023720143","https://openalex.org/W2490137852"],"abstract_inverted_index":{"Bi-directional":[0],"gene":[1],"set":[2],"enrichment":[3],"analysis":[4,42,95],"more":[5],"accurately":[6],"reflects":[7],"dynamic":[8],"regulatory":[9],"behaviour":[10],"in":[11,43],"biochemical":[12],"pathways,":[13],"and":[14,72,85],"as":[15,75],"such":[16,30],"highlighted":[17],"biologically":[18],"relevant":[19],"changes":[20],"that":[21,91],"were":[22],"not":[23],"detected":[24],"using":[25],"a":[26],"traditional":[27],"approach.":[28],"In":[29,63],"cases":[31],"where":[32],"transcriptomic":[33],"response":[34],"to":[35,99],"treatment":[36],"is":[37],"exceptionally":[38],"large,":[39],"canonical":[40],"correlation":[41,56],"conjunction":[44],"with":[45,57],"Fisher's":[46],"exact":[47],"test":[48],"highlights":[49],"the":[50,58,79,97],"subset":[51],"of":[52,61,94,104],"pathways":[53,77],"showing":[54],"strongest":[55],"clinical":[59],"markers":[60],"interest.":[62],"this":[64,92],"case,":[65],"we":[66],"have":[67],"identified":[68],"selenoamino":[69],"acid":[70],"metabolism":[71],"steroid":[73],"biosynthesis":[74],"key":[76],"mediating":[78],"observed":[80],"relationship":[81],"between":[82],"metabolic":[83],"health":[84],"high-CLA":[86],"beef.":[87],"These":[88],"results":[89],"indicate":[90],"type":[93],"has":[96],"potential":[98],"generate":[100],"novel":[101],"transcriptome-based":[102],"biomarkers":[103],"disease.":[105]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
