{"id":"https://openalex.org/W2056239054","doi":"https://doi.org/10.1186/1471-2105-11-474","title":"ModuleOrganizer: detecting modules in families of transposable elements","display_name":"ModuleOrganizer: detecting modules in families of transposable elements","publication_year":2010,"publication_date":"2010-09-22","ids":{"openalex":"https://openalex.org/W2056239054","doi":"https://doi.org/10.1186/1471-2105-11-474","mag":"2056239054","pmid":"https://pubmed.ncbi.nlm.nih.gov/20860790"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-474","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-474","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-474","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-474","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067540328","display_name":"S\u00e9bastien Tempel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Sebastien Tempel","raw_affiliation_strings":["IBISC, Tour Evry 2, 523 Place des Terrasses del'Agora, 91000 Evry, France","IBISC, Evry, France"],"affiliations":[{"raw_affiliation_string":"IBISC, Tour Evry 2, 523 Place des Terrasses del'Agora, 91000 Evry, France","institution_ids":[]},{"raw_affiliation_string":"IBISC, Evry, France","institution_ids":["https://openalex.org/I4210107733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057425855","display_name":"Christine Rousseau","orcid":null},"institutions":[{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210131653","display_name":"\u00c9cole Nationale Sup\u00e9rieure Agronomique de Toulouse","ror":"https://ror.org/03d5w9863","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4210131653","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christine Rousseau","raw_affiliation_strings":["INP-ENSAT, Avenue de l'agrobiopole, 31326, Castanet tolosan, France","INP-ENSAT, Castanet tolosan, France"],"affiliations":[{"raw_affiliation_string":"INP-ENSAT, Avenue de l'agrobiopole, 31326, Castanet tolosan, France","institution_ids":["https://openalex.org/I205747304","https://openalex.org/I4210131653"]},{"raw_affiliation_string":"INP-ENSAT, Castanet tolosan, France","institution_ids":["https://openalex.org/I205747304","https://openalex.org/I4210131653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091493314","display_name":"Fariza Tahi","orcid":"https://orcid.org/0000-0002-3975-5668"},"institutions":[{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fariza Tahi","raw_affiliation_strings":["IBISC, Tour Evry 2, 523, place des terrasses del'agora, 91000, Evry, France","IBISC, Evry, France"],"affiliations":[{"raw_affiliation_string":"IBISC, Tour Evry 2, 523, place des terrasses del'agora, 91000, Evry, France","institution_ids":["https://openalex.org/I4210107733"]},{"raw_affiliation_string":"IBISC, Evry, France","institution_ids":["https://openalex.org/I4210107733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103534129","display_name":"Jacques Nicolas","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jacques Nicolas","raw_affiliation_strings":["IRISA-INRIA, Campus de Beaulieu, b\u00e2t 12, 35042, Rennes cedex, France","IRISA--INRIA, Rennes Cedex, France"],"affiliations":[{"raw_affiliation_string":"IRISA-INRIA, Campus de Beaulieu, b\u00e2t 12, 35042, Rennes cedex, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937"]},{"raw_affiliation_string":"IRISA--INRIA, Rennes Cedex, France","institution_ids":["https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5067540328"],"corresponding_institution_ids":["https://openalex.org/I4210107733"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.655,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.86153764,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11","issue":"1","first_page":"474","last_page":"474"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.9196208715438843},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6006217002868652},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5953742265701294},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5677912831306458},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.505469799041748},{"id":"https://openalex.org/keywords/transposition","display_name":"Transposition (logic)","score":0.4926055073738098},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4128507673740387},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33267849683761597},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17236238718032837},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08865422010421753}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.9196208715438843},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6006217002868652},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5953742265701294},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5677912831306458},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.505469799041748},{"id":"https://openalex.org/C12455157","wikidata":"https://www.wikidata.org/wiki/Q7835331","display_name":"Transposition (logic)","level":2,"score":0.4926055073738098},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4128507673740387},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33267849683761597},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17236238718032837},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08865422010421753}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-474","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-474","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-474","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20860790","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20860790","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:inria-00536742v1","is_oa":false,"landing_page_url":"https://inria.hal.science/inria-00536742","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2010, 11, pp.474. &#x27E8;10.1186/1471-2105-11-474&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:c81f72c6cab1489bacdd982e9004dc46","is_oa":true,"landing_page_url":"https://doaj.org/article/c81f72c6cab1489bacdd982e9004dc46","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 474 (2010)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:1967070","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2955051","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-474","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-474","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-474","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.41999998688697815}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2056239054.pdf","grobid_xml":"https://content.openalex.org/works/W2056239054.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W233486025","https://openalex.org/W938539187","https://openalex.org/W1229256111","https://openalex.org/W1480087548","https://openalex.org/W1518105754","https://openalex.org/W1583563537","https://openalex.org/W1877818810","https://openalex.org/W1965520251","https://openalex.org/W1982828686","https://openalex.org/W1990061958","https://openalex.org/W1995438082","https://openalex.org/W2003360372","https://openalex.org/W2016381774","https://openalex.org/W2016914450","https://openalex.org/W2021809202","https://openalex.org/W2030500606","https://openalex.org/W2031211508","https://openalex.org/W2038624062","https://openalex.org/W2045227735","https://openalex.org/W2054984882","https://openalex.org/W2059513841","https://openalex.org/W2066558394","https://openalex.org/W2068494209","https://openalex.org/W2070937455","https://openalex.org/W2071501400","https://openalex.org/W2072603644","https://openalex.org/W2107666955","https://openalex.org/W2116016140","https://openalex.org/W2121428086","https://openalex.org/W2123362149","https://openalex.org/W2130063668","https://openalex.org/W2133002406","https://openalex.org/W2139306337","https://openalex.org/W2141878073","https://openalex.org/W2142466527","https://openalex.org/W2144268209","https://openalex.org/W2146133538","https://openalex.org/W2146718110","https://openalex.org/W2147055980","https://openalex.org/W2151899848","https://openalex.org/W2158714788","https://openalex.org/W2160992353","https://openalex.org/W2163143728","https://openalex.org/W2164799476","https://openalex.org/W2165403355","https://openalex.org/W3147998329"],"related_works":["https://openalex.org/W2107333779","https://openalex.org/W2029682683","https://openalex.org/W1818931820","https://openalex.org/W1975773617","https://openalex.org/W2008263291","https://openalex.org/W2135962639","https://openalex.org/W2003815722","https://openalex.org/W2042081010","https://openalex.org/W3196655767","https://openalex.org/W2100512028"],"abstract_inverted_index":{"ModuleOrganizer":[0],"is":[1],"available":[2],"on":[3],"the":[4],"Genouest":[5],"bioinformatics":[6],"center":[7],"at":[8],"http://moduleorganizer.genouest.org.":[9]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
