{"id":"https://openalex.org/W2140058398","doi":"https://doi.org/10.1186/1471-2105-11-47","title":"BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server","display_name":"BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server","publication_year":2010,"publication_date":"2010-01-25","ids":{"openalex":"https://openalex.org/W2140058398","doi":"https://doi.org/10.1186/1471-2105-11-47","mag":"2140058398","pmid":"https://pubmed.ncbi.nlm.nih.gov/20100327"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-47","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014016591","display_name":"Bing Xiong","orcid":"https://orcid.org/0000-0001-9776-8136"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112820","display_name":"Shanghai Institute of Materia Medica","ror":"https://ror.org/022syn853","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112820"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bing Xiong","raw_affiliation_strings":["State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, Pudong, Shanghai, 201203, PR China. bxiong@mail.shcnc.ac.cn","State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, Pudong, Shanghai, 201203, PR China. bxiong@mail.shcnc.ac.cn","institution_ids":["https://openalex.org/I4210112820"]},{"raw_affiliation_string":"State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong, PR China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103823827","display_name":"Jie Wu","orcid":"https://orcid.org/0000-0002-0280-1341"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Wu","raw_affiliation_strings":["Department of Applied Mathematics and Statistics, Stony Brook University, 100 Nicolls Rd, Stony Brook, NY, 11794, USA","Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Statistics, Stony Brook University, 100 Nicolls Rd, Stony Brook, NY, 11794, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104110492","display_name":"David L. Burk","orcid":null},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"David L Burk","raw_affiliation_strings":["Department of Biochemistry, McGill University, 740 Dr. Penfield Avenue, Montreal, Quebec, H3A 1A4, Canada","*Department of Biochemistry, McGill University, Montreal, Canada;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, McGill University, 740 Dr. Penfield Avenue, Montreal, Quebec, H3A 1A4, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"*Department of Biochemistry, McGill University, Montreal, Canada;","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045382570","display_name":"Mengzhu Xue","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112820","display_name":"Shanghai Institute of Materia Medica","ror":"https://ror.org/022syn853","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112820"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengzhu Xue","raw_affiliation_strings":["State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, Pudong, Shanghai, 201203, PR China","State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, Pudong, Shanghai, 201203, PR China","institution_ids":["https://openalex.org/I4210112820","https://openalex.org/I19820366"]},{"raw_affiliation_string":"State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong, PR China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001392142","display_name":"Hualiang Jiang","orcid":"https://orcid.org/0000-0003-0656-6315"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112820","display_name":"Shanghai Institute of Materia Medica","ror":"https://ror.org/022syn853","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112820"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hualiang Jiang","raw_affiliation_strings":["State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, Pudong, Shanghai, 201203, PR China","State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, Pudong, Shanghai, 201203, PR China","institution_ids":["https://openalex.org/I4210112820","https://openalex.org/I19820366"]},{"raw_affiliation_string":"State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong, PR China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113631346","display_name":"Jingkang Shen","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112820","display_name":"Shanghai Institute of Materia Medica","ror":"https://ror.org/022syn853","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112820"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingkang Shen","raw_affiliation_strings":["State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, Pudong, Shanghai, 201203, PR China","State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, Pudong, Shanghai, 201203, PR China","institution_ids":["https://openalex.org/I4210112820","https://openalex.org/I19820366"]},{"raw_affiliation_string":"State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Pudong, PR China","institution_ids":["https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.1531,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.95788501,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"47","last_page":"47"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.5648000240325928,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.5648000240325928,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.28859999775886536,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.04899999871850014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6172341704368591},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6078943610191345},{"id":"https://openalex.org/keywords/structural-genomics","display_name":"Structural genomics","score":0.6056323051452637},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.514539897441864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5140563249588013},{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.4939458966255188},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.49236857891082764},{"id":"https://openalex.org/keywords/nearest-neighbor-search","display_name":"Nearest neighbor search","score":0.4728853106498718},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.42778468132019043},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39820486307144165},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2958652973175049},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19210398197174072},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17591074109077454},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17397484183311462},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.14470669627189636},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1389707624912262},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.08818435668945312}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6172341704368591},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6078943610191345},{"id":"https://openalex.org/C192772702","wikidata":"https://www.wikidata.org/wiki/Q2583975","display_name":"Structural genomics","level":3,"score":0.6056323051452637},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.514539897441864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5140563249588013},{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.4939458966255188},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.49236857891082764},{"id":"https://openalex.org/C116738811","wikidata":"https://www.wikidata.org/wiki/Q608751","display_name":"Nearest neighbor search","level":2,"score":0.4728853106498718},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.42778468132019043},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39820486307144165},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2958652973175049},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19210398197174072},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17591074109077454},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17397484183311462},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.14470669627189636},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1389707624912262},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.08818435668945312},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20100327","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20100327","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b7bc7873e47844efba95dca581977a56","is_oa":false,"landing_page_url":"https://doaj.org/article/b7bc7873e47844efba95dca581977a56","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 47 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3098077","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3098077","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.46000000834465027,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310638","display_name":"McGill University","ror":"https://ror.org/01pxwe438"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140058398.pdf","grobid_xml":"https://content.openalex.org/works/W2140058398.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W7177608","https://openalex.org/W1508885706","https://openalex.org/W1517566065","https://openalex.org/W1585634379","https://openalex.org/W1969230095","https://openalex.org/W1981254997","https://openalex.org/W1986969007","https://openalex.org/W1990959193","https://openalex.org/W2015147525","https://openalex.org/W2015922674","https://openalex.org/W2017319470","https://openalex.org/W2021954541","https://openalex.org/W2023790301","https://openalex.org/W2030650909","https://openalex.org/W2040595595","https://openalex.org/W2047819993","https://openalex.org/W2048947602","https://openalex.org/W2051895548","https://openalex.org/W2054534830","https://openalex.org/W2068886104","https://openalex.org/W2074388759","https://openalex.org/W2082667898","https://openalex.org/W2085277871","https://openalex.org/W2088534163","https://openalex.org/W2096729078","https://openalex.org/W2103017472","https://openalex.org/W2107910985","https://openalex.org/W2108067237","https://openalex.org/W2114782816","https://openalex.org/W2117164735","https://openalex.org/W2124842489","https://openalex.org/W2130479394","https://openalex.org/W2131724426","https://openalex.org/W2141885858","https://openalex.org/W2144258433","https://openalex.org/W2146940292","https://openalex.org/W2158698691","https://openalex.org/W2158714788","https://openalex.org/W2166744107","https://openalex.org/W2171602500","https://openalex.org/W2331428599","https://openalex.org/W4394932198"],"related_works":["https://openalex.org/W2002288604","https://openalex.org/W2365466262","https://openalex.org/W2035381155","https://openalex.org/W2019972293","https://openalex.org/W2053972265","https://openalex.org/W2385787406","https://openalex.org/W2047726875","https://openalex.org/W2155148643","https://openalex.org/W2003475502","https://openalex.org/W3025591349"],"abstract_inverted_index":{"BACKGROUND:":[0],"Genome":[1],"sequencing":[2],"and":[3,22,63,65,118,132,204,238],"post-genomics":[4],"projects":[5],"such":[6],"as":[7],"structural":[8,239],"genomics":[9,75,240],"are":[10,139],"extending":[11],"the":[12,15,33,68,115,127,130,175,183,186,198,221],"frontier":[13],"of":[14,17,20,35,70,114,177,200,254],"study":[16,220],"sequence-structure-function":[18],"relationship":[19],"genes":[21,73],"their":[23,137],"products.":[24],"Although":[25],"many":[26],"sequence/structure-based":[27],"methods":[28,56],"have":[29],"been":[30],"devised":[31],"with":[32,161],"aim":[34],"deciphering":[36],"this":[37,46,178],"delicate":[38],"relationship,":[39],"there":[40],"still":[41],"remain":[42],"large":[43],"gaps":[44],"in":[45,97,142,235],"fundamental":[47],"problem,":[48],"which":[49,90,164,208],"continuously":[50],"drives":[51],"researchers":[52,92,211,233],"to":[53,57,66,93,125,192,215,219,241],"develop":[54],"novel":[55],"extract":[58],"relevant":[59],"information":[60,196],"from":[61,105,257],"sequences":[62],"structures":[64],"infer":[67],"functions":[69],"newly":[71],"identified":[72],"by":[74,159,212,250],"technology.":[76],"RESULTS:":[77],"Here":[78],"we":[79],"present":[80],"an":[81],"ultrafast":[82,179,226],"method,":[83],"named":[84],"BSSF(Binding":[85],"Site":[86],"Similarity":[87],"&":[88],"Function),":[89],"enables":[91],"conduct":[94],"similarity":[95,128,148,169],"searches":[96],"a":[98,111,119,143,154,166],"comprehensive":[99],"three-dimensional":[100],"binding":[101,116,156,244],"site":[102,117,157],"database":[103,133,184,258],"extracted":[104],"PDB":[106],"structures.":[107],"This":[108,145,225],"method":[109],"utilizes":[110],"fingerprint":[112,146],"representation":[113],"validated":[120,152],"statistical":[121,195],"Z-score":[122],"function":[123],"scheme":[124],"judge":[126],"between":[129],"query":[131,222],"items,":[134],"even":[135],"if":[136],"similarities":[138],"only":[140,231],"constrained":[141],"sub-pocket.":[144],"based":[147],"measurement":[149],"was":[150],"also":[151,247],"on":[153],"known":[155],"dataset":[158],"comparing":[160],"geometric":[162],"hashing,":[163],"is":[165,189],"standard":[167],"3D":[168],"method.":[170,180],"The":[171],"comparison":[172],"clearly":[173],"demonstrated":[174],"utility":[176],"After":[181],"conducting":[182],"searching,":[185],"hit":[187,255],"list":[188,256],"further":[190,217,252],"analyzed":[191],"provide":[193],"basic":[194],"about":[197],"occurrences":[199],"Gene":[201],"Ontology":[202],"terms":[203],"Enzyme":[205],"Commission":[206],"numbers,":[207],"may":[209],"benefit":[210],"helping":[213],"them":[214,249],"design":[216,237],"experiments":[218],"proteins.":[223],"CONCLUSIONS:":[224],"web-based":[227],"system":[228],"will":[229],"not":[230],"help":[232],"interested":[234],"drug":[236],"identify":[242],"similar":[243],"sites,":[245],"but":[246],"assist":[248],"providing":[251],"analysis":[253],"searching.":[259]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
