{"id":"https://openalex.org/W2049344510","doi":"https://doi.org/10.1186/1471-2105-11-419","title":"TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs","display_name":"TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs","publication_year":2010,"publication_date":"2010-08-09","ids":{"openalex":"https://openalex.org/W2049344510","doi":"https://doi.org/10.1186/1471-2105-11-419","mag":"2049344510","pmid":"https://pubmed.ncbi.nlm.nih.gov/20696049"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-419","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-419","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-419","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-419","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085122646","display_name":"Ming L\u00fc","orcid":"https://orcid.org/0000-0003-3768-7267"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ming Lu","raw_affiliation_strings":["Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","Department of Biomedical Informatics, Peking University Health Science Center, Beijing 100191, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029130019","display_name":"Bing Shi","orcid":"https://orcid.org/0000-0001-9117-1945"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210124286","display_name":"The Military General Hospital of Beijing PLA","ror":"https://ror.org/0259e4473","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210124286"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bing Shi","raw_affiliation_strings":["Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","Department of Cardiology, Beijing Military General Hospital, Beijing, 100700, China","Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Cardiology, Beijing Military General Hospital, Beijing, 100700, China","institution_ids":["https://openalex.org/I4210124286"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100347435","display_name":"Juan Wang","orcid":"https://orcid.org/0000-0002-3111-9130"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Wang","raw_affiliation_strings":["Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045622780","display_name":"Qun Cao","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qun Cao","raw_affiliation_strings":["Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027886490","display_name":"Qinghua Cui","orcid":"https://orcid.org/0000-0003-3018-5221"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinghua Cui","raw_affiliation_strings":["Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, 100191, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Peking University Health Science Center, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5085122646"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.3503,"has_fulltext":true,"cited_by_count":133,"citation_normalized_percentile":{"value":0.92038171,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"419","last_page":"419"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.8952357172966003},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5634415149688721},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5218442678451538},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4249672591686249},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3598673343658447},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3430459499359131},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3096863329410553},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1764141321182251},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12129539251327515}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.8952357172966003},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5634415149688721},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5218442678451538},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4249672591686249},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3598673343658447},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3430459499359131},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3096863329410553},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1764141321182251},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12129539251327515}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009203","descriptor_name":"Myocardial Infarction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-419","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-419","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-419","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20696049","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20696049","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6ab5c9915fc14f9087d1d1a545295c31","is_oa":true,"landing_page_url":"https://doaj.org/article/6ab5c9915fc14f9087d1d1a545295c31","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 419 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2924873","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2924873","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-419","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-419","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-419","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3085993365","display_name":null,"funder_award_id":"(Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8108738058","display_name":null,"funder_award_id":"30900829","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321106","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2049344510.pdf","grobid_xml":"https://content.openalex.org/works/W2049344510.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1648301895","https://openalex.org/W1966629172","https://openalex.org/W1967832728","https://openalex.org/W1982752738","https://openalex.org/W1983452147","https://openalex.org/W1983991097","https://openalex.org/W2004682594","https://openalex.org/W2028994878","https://openalex.org/W2035201715","https://openalex.org/W2047967134","https://openalex.org/W2113445340","https://openalex.org/W2120141187","https://openalex.org/W2120177894","https://openalex.org/W2122683221","https://openalex.org/W2128219894","https://openalex.org/W2133763262","https://openalex.org/W2137257434","https://openalex.org/W2144896290","https://openalex.org/W2152274187","https://openalex.org/W2155290141","https://openalex.org/W2155874171","https://openalex.org/W2160913143","https://openalex.org/W2162674813","https://openalex.org/W2171230529"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W3151405604","https://openalex.org/W2565797512","https://openalex.org/W2050308539","https://openalex.org/W2793648706","https://openalex.org/W2019096591","https://openalex.org/W3032012916","https://openalex.org/W3043187607","https://openalex.org/W2057742104","https://openalex.org/W4283692078"],"abstract_inverted_index":{"TAM":[0,11,20],"can":[1,12],"efficiently":[2],"identify":[3,16],"meaningful":[4],"categories":[5],"for":[6],"given":[7],"miRNAs.":[8],"In":[9],"addition,":[10],"be":[13],"used":[14],"to":[15],"novel":[17],"miRNA":[18,25],"biomarkers.":[19],"tool,":[21],"source":[22],"codes,":[23],"and":[24],"category":[26],"data":[27],"are":[28],"freely":[29],"available":[30],"at":[31],"http://cmbi.bjmu.edu.cn/tam.":[32]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":14}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
