{"id":"https://openalex.org/W2171732889","doi":"https://doi.org/10.1186/1471-2105-11-381","title":"EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results","display_name":"EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results","publication_year":2010,"publication_date":"2010-07-16","ids":{"openalex":"https://openalex.org/W2171732889","doi":"https://doi.org/10.1186/1471-2105-11-381","mag":"2171732889","pmid":"https://pubmed.ncbi.nlm.nih.gov/20637083"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-381","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-381","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-381","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-381","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108381763","display_name":"Shide Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Shide Liang","raw_affiliation_strings":["Jacobs University Bremen, Germany","School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D-28759, Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jacobs University Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]},{"raw_affiliation_string":"School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D-28759, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100705796","display_name":"Dandan Zheng","orcid":"https://orcid.org/0000-0003-2259-1633"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dandan Zheng","raw_affiliation_strings":["Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA, 23298, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA, 23298, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003461562","display_name":"Daron M. Standley","orcid":"https://orcid.org/0000-0003-4078-0817"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Daron M Standley","raw_affiliation_strings":["Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025550960","display_name":"Bo Yao","orcid":"https://orcid.org/0009-0002-2225-9956"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bo Yao","raw_affiliation_strings":["School of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090330416","display_name":"Martin Zacharias","orcid":"https://orcid.org/0000-0001-5163-2663"},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Martin Zacharias","raw_affiliation_strings":["Physics Department, Technical University Munich, James Franck Str, D-85747, Garching, Germany","School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D-28759, Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physics Department, Technical University Munich, James Franck Str, D-85747, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D-28759, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100458161","display_name":"Chi Zhang","orcid":"https://orcid.org/0000-0002-1827-8137"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chi Zhang","raw_affiliation_strings":["School of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5090330416"],"corresponding_institution_ids":["https://openalex.org/I193619901","https://openalex.org/I62916508"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":2.7379,"has_fulltext":true,"cited_by_count":171,"citation_normalized_percentile":{"value":0.9083508,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"381","last_page":"381"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.002099999925121665,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9632079601287842},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6786660552024841},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.614467442035675},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.6095227599143982},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.6092721819877625},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5490548610687256},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.479978084564209},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4634999930858612},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34680137038230896},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3355035185813904},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31808537244796753},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.27263331413269043},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21634814143180847},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.19688141345977783},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.12419039011001587}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9632079601287842},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6786660552024841},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.614467442035675},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.6095227599143982},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.6092721819877625},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5490548610687256},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.479978084564209},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4634999930858612},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34680137038230896},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3355035185813904},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31808537244796753},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.27263331413269043},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21634814143180847},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.19688141345977783},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.12419039011001587},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-11-381","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-381","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-381","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20637083","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20637083","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.unl.edu:bioscifacpub-1170","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/bioscifacpub/171","pdf_url":null,"source":{"id":"https://openalex.org/S4306400577","display_name":"Lincoln (University of Nebraska)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114395901","host_organization_name":"University of Nebraska\u2013Lincoln","host_organization_lineage":["https://openalex.org/I114395901"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"School of Biological Sciences: Faculty Publications","raw_type":"text"},{"id":"pmh:oai:scholarscompass.vcu.edu:radonc_pubs-1004","is_oa":true,"landing_page_url":"https://scholarscompass.vcu.edu/radonc_pubs/5","pdf_url":null,"source":{"id":"https://openalex.org/S4377196340","display_name":"VCU Scholars Compass (Virginia Commonwealth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184840846","host_organization_name":"Virginia Commonwealth University","host_organization_lineage":["https://openalex.org/I184840846"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Radiation Oncology Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:f140b4d6cb67406c91ebd29be32c9c3c","is_oa":false,"landing_page_url":"https://doaj.org/article/f140b4d6cb67406c91ebd29be32c9c3c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 381 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2910724","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2910724","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-381","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-381","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-381","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320328633","display_name":"Jacobs University","ror":"https://ror.org/02yrs2n53"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171732889.pdf","grobid_xml":"https://content.openalex.org/works/W2171732889.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1526839960","https://openalex.org/W1535117461","https://openalex.org/W1968361401","https://openalex.org/W1983113740","https://openalex.org/W1993568862","https://openalex.org/W2014744153","https://openalex.org/W2035014358","https://openalex.org/W2042492527","https://openalex.org/W2066609648","https://openalex.org/W2087202599","https://openalex.org/W2087937056","https://openalex.org/W2097874743","https://openalex.org/W2102046002","https://openalex.org/W2105438341","https://openalex.org/W2106082576","https://openalex.org/W2106150646","https://openalex.org/W2110298304","https://openalex.org/W2125866257","https://openalex.org/W2137575262","https://openalex.org/W2140468230","https://openalex.org/W2149458203","https://openalex.org/W2149984099","https://openalex.org/W2158781610","https://openalex.org/W2158899863","https://openalex.org/W2160397907"],"related_works":["https://openalex.org/W1979044599","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W2060253881"],"abstract_inverted_index":{"BACKGROUND:":[0],"Accurate":[1],"prediction":[2,40,69,139],"of":[3,49,57,65,183,190,210],"antigenic":[4,52],"epitopes":[5,27,167],"is":[6,16,28,98],"important":[7],"for":[8,25,59,89,114],"immunologic":[9],"research":[10],"and":[11,71,94,104,165,196,216],"medical":[12],"applications,":[13],"but":[14],"it":[15],"still":[17],"an":[18,72,208],"open":[19],"problem":[20],"in":[21,154],"bioinformatics.":[22],"The":[23,54,111,174],"case":[24],"discontinuous":[26,38,44,67,90,115],"even":[29],"worse":[30],"-":[31,206],"currently":[32],"there":[33],"are":[34,106],"only":[35],"a":[36,99,120,199],"few":[37],"epitope":[39,68,91,116,138],"servers":[41,140],"available,":[42],"though":[43],"peptides":[45],"constitute":[46],"the":[47,63,163,177],"majority":[48],"all":[50,156],"B-cell":[51],"epitopes.":[53],"small":[55],"number":[56],"structures":[58,161],"antigen-antibody":[60],"complexes":[61],"limits":[62],"development":[64],"reliable":[66],"methods":[70,145],"unbiased":[73],"benchmark":[74],"to":[75,126,141],"evaluate":[76],"developed":[77],"methods.":[78],"RESULTS:":[79],"In":[80],"this":[81],"work,":[82],"we":[83,132],"present":[84],"two":[85],"novel":[86],"server":[87,112,205],"applications":[88],"prediction:":[92],"EPSVR":[93,134,184],"EPMeta,":[95,103],"where":[96],"EPMeta":[97,197],"meta":[100],"server.":[101],"EPSVR,":[102,118],"datasets":[105],"available":[107],"at":[108],"http://sysbio.unl.edu/services.":[109],"CONCLUSION:":[110],"application":[113],"prediction,":[117],"uses":[119],"Support":[121],"Vector":[122],"Regression":[123],"(SVR)":[124],"method":[125],"integrate":[127],"six":[128],"scoring":[129],"terms.":[130],"Furthermore,":[131],"combined":[133],"with":[135,162,207],"five":[136],"existing":[137,193],"construct":[142],"EPMeta.":[143],"All":[144],"were":[146,168],"benchmarked":[147],"by":[148,170],"our":[149],"curated":[150],"independent":[151],"test":[152],"set,":[153],"which":[155],"antigens":[157],"had":[158,198],"no":[159],"complex":[160],"antibody,":[164],"their":[166],"identified":[169],"various":[171],"biochemical":[172],"experiments.":[173],"area":[175],"under":[176],"receiver":[178],"operating":[179],"characteristic":[180],"curve":[181],"(AUC)":[182],"was":[185],"0.597,":[186],"higher":[187,213],"than":[188,202,214],"that":[189],"any":[191,203],"other":[192],"single":[194,204],"server,":[195],"better":[200],"performance":[201],"AUC":[209],"0.638,":[211],"significantly":[212],"PEPITO":[215],"Disctope":[217],"(p-value":[218],"<":[219],"0.05).":[220]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":10}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
