{"id":"https://openalex.org/W2028614468","doi":"https://doi.org/10.1186/1471-2105-11-374","title":"Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions","display_name":"Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions","publication_year":2010,"publication_date":"2010-07-12","ids":{"openalex":"https://openalex.org/W2028614468","doi":"https://doi.org/10.1186/1471-2105-11-374","mag":"2028614468","pmid":"https://pubmed.ncbi.nlm.nih.gov/20624289"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-374","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-374","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-374","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-374","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074211712","display_name":"Vladimir Potapov","orcid":"https://orcid.org/0000-0002-7690-3754"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Vladimir Potapov","raw_affiliation_strings":["Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","*Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"*Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel;","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110063908","display_name":"Mati Cohen","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Mati Cohen","raw_affiliation_strings":["Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","*Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"*Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel;","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050153345","display_name":"Yuval Inbar","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yuval Inbar","raw_affiliation_strings":["Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","*Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"*Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel;","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039460084","display_name":"Gideon Schreiber","orcid":"https://orcid.org/0000-0002-2922-5882"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Gideon Schreiber","raw_affiliation_strings":["Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","*Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"*Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel;","institution_ids":["https://openalex.org/I53964585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5074211712"],"corresponding_institution_ids":["https://openalex.org/I53964585"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.8166,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.71444876,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"374","last_page":"374"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8820000290870667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8820000290870667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.057999998331069946,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.018400000408291817,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5902628898620605},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5371246337890625},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4684612452983856},{"id":"https://openalex.org/keywords/chain","display_name":"Chain (unit)","score":0.45670461654663086},{"id":"https://openalex.org/keywords/side-chain","display_name":"Side chain","score":0.45088422298431396},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.41088277101516724},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.36970633268356323},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3298308849334717},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2956013083457947},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2055356204509735},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19071266055107117},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13942155241966248},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1127576231956482},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10536789894104004},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07634204626083374}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5902628898620605},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5371246337890625},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4684612452983856},{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.45670461654663086},{"id":"https://openalex.org/C204921945","wikidata":"https://www.wikidata.org/wiki/Q899689","display_name":"Side chain","level":3,"score":0.45088422298431396},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.41088277101516724},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.36970633268356323},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3298308849334717},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2956013083457947},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2055356204509735},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19071266055107117},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13942155241966248},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1127576231956482},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10536789894104004},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07634204626083374},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053179","descriptor_name":"Caspase 7","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053179","descriptor_name":"Caspase 7","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053179","descriptor_name":"Caspase 7","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053181","descriptor_name":"Caspase 8","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053181","descriptor_name":"Caspase 8","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053181","descriptor_name":"Caspase 8","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-374","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-374","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-374","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20624289","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20624289","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:02a1a34d09d746349dbd5ada8b9a540b","is_oa":true,"landing_page_url":"https://doaj.org/article/02a1a34d09d746349dbd5ada8b9a540b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 374 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2912888","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2912888","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-374","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-374","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-374","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2028614468.pdf","grobid_xml":"https://content.openalex.org/works/W2028614468.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1601752367","https://openalex.org/W1968543088","https://openalex.org/W1969644422","https://openalex.org/W1972728295","https://openalex.org/W1975313783","https://openalex.org/W1995431912","https://openalex.org/W1996051469","https://openalex.org/W1997276931","https://openalex.org/W1999613945","https://openalex.org/W2002452896","https://openalex.org/W2005358040","https://openalex.org/W2005651680","https://openalex.org/W2011495938","https://openalex.org/W2014734789","https://openalex.org/W2027978582","https://openalex.org/W2028702957","https://openalex.org/W2028843689","https://openalex.org/W2034492636","https://openalex.org/W2039249260","https://openalex.org/W2042694939","https://openalex.org/W2043699100","https://openalex.org/W2045642444","https://openalex.org/W2047289990","https://openalex.org/W2055395356","https://openalex.org/W2080398714","https://openalex.org/W2085182312","https://openalex.org/W2085764610","https://openalex.org/W2088608587","https://openalex.org/W2090847673","https://openalex.org/W2093381148","https://openalex.org/W2103856741","https://openalex.org/W2104533058","https://openalex.org/W2106154817","https://openalex.org/W2106648157","https://openalex.org/W2125677968","https://openalex.org/W2130479394","https://openalex.org/W2134731229","https://openalex.org/W2137736208","https://openalex.org/W2141685906","https://openalex.org/W2142210548","https://openalex.org/W2149026172","https://openalex.org/W2153153865","https://openalex.org/W2153561236","https://openalex.org/W2161776897","https://openalex.org/W2162166182","https://openalex.org/W2164130591","https://openalex.org/W2165271176","https://openalex.org/W2165522820","https://openalex.org/W2166257986","https://openalex.org/W2168749685","https://openalex.org/W2170471837","https://openalex.org/W4246356731"],"related_works":["https://openalex.org/W4280529929","https://openalex.org/W2946599741","https://openalex.org/W2593264178","https://openalex.org/W2043066834","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2058542300","https://openalex.org/W1564749278","https://openalex.org/W2294851134"],"abstract_inverted_index":{"BACKGROUND:":[0],"Accurate":[1],"evaluation":[2,45,242],"and":[3,9,29,44,65,127,166,220,223,243],"modelling":[4,43,145,199,246,263],"of":[5,16,26,52,82,98,112,120,131,152,177,218,226,247,264],"residue-residue":[6,53,248],"interactions":[7,85,249],"within":[8],"between":[10],"proteins":[11],"is":[12,173,256],"a":[13,37,48,69,72,96,150,181,239],"key":[14],"aspect":[15],"computational":[17,30],"structure":[18,42,94,104],"prediction":[19],"including":[20],"homology":[21,198],"modelling,":[22],"protein-protein":[23],"docking,":[24],"refinement":[25],"low-resolution":[27],"structures,":[28],"protein":[31,41,63,147,155,251],"design.":[32],"RESULTS:":[33],"Here":[34],"we":[35,184],"introduce":[36],"method":[38],"for":[39,71,163,169,180,221,241,244],"accurate":[40,245],"based":[46,200],"on":[47,201],"novel":[49],"4-distance":[50,57,80,227],"description":[51,81],"interaction":[54],"geometry.":[55],"Statistical":[56],"preferences":[58],"were":[59,66],"extracted":[60],"from":[61,95,203],"high-resolution":[62,114,133,154,262],"structures":[64,156],"used":[67,88,237],"as":[68,105,189,238],"basis":[70],"knowledge-based":[73],"potential,":[74],"called":[75],"Hunter.":[76],"We":[77],"demonstrate":[78],"that":[79,186,233],"side":[83,143],"chain":[84,144],"can":[86,235],"be":[87,236],"reliably":[89],"to":[90,142,214,258],"discriminate":[91],"the":[92,102,106,157,175,204,216],"native":[93,103],"set":[97,151],"decoys.":[99],"Hunter":[100,187,219,234],"ranked":[101],"top":[107,195],"one":[108],"in":[109,117,128,146,174,197,250],"217":[110],"out":[111,119,130],"220":[113],"decoy":[115,125,135],"sets,":[116],"25":[118],"28":[121],"\"Decoys":[122],"'R'":[123],"Us\"":[124],"sets":[126],"24":[129],"27":[132],"CASP7/8":[134],"sets.":[136],"The":[137,207,253],"same":[138,254],"concept":[139],"was":[140,160,212],"applied":[141],"structures.":[148,252],"On":[149],"very":[153],"average":[158],"RMSD":[159],"1.47":[161],"A":[162,168],"all":[164],"residues":[165],"0.73":[167],"buried":[170],"residues,":[171],"which":[172],"range":[176],"attainable":[178],"accuracy":[179],"model.":[182],"Finally,":[183],"show":[185],"performs":[188],"good":[190],"or":[191],"better":[192],"than":[193],"other":[194,259],"methods":[196],"results":[202,231],"CASP7":[205],"experiment.":[206],"supporting":[208],"web":[209],"site":[210],"http://bioinfo.weizmann.ac.il/hunter/":[211],"developed":[213],"enable":[215],"use":[217],"visualization":[222],"interactive":[224],"exploration":[225],"distributions.":[228],"CONCLUSIONS:":[229],"Our":[230],"suggest":[232],"tool":[240],"methodology":[255],"applicable":[257],"areas":[260],"involving":[261],"biomolecules.":[265]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}