{"id":"https://openalex.org/W2149031002","doi":"https://doi.org/10.1186/1471-2105-11-367","title":"A flexible R package for nonnegative matrix factorization","display_name":"A flexible R package for nonnegative matrix factorization","publication_year":2010,"publication_date":"2010-07-02","ids":{"openalex":"https://openalex.org/W2149031002","doi":"https://doi.org/10.1186/1471-2105-11-367","mag":"2149031002","pmid":"https://pubmed.ncbi.nlm.nih.gov/20598126"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-367","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-367","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-367","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-367","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084757561","display_name":"Renaud Gaujoux","orcid":null},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Renaud Gaujoux","raw_affiliation_strings":["Computational Biology Group, Department of Clinical Laboratory Sciences, Faculty of Health Sciences, University of Cape Town, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Group, Department of Clinical Laboratory Sciences, Faculty of Health Sciences, University of Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004762593","display_name":"Cathal Seoighe","orcid":"https://orcid.org/0000-0003-0496-4029"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Cathal Seoighe","raw_affiliation_strings":["School of Mathematics, Statistics and Applied Mathematics, National University of Ireland Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Statistics and Applied Mathematics, National University of Ireland Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5004762593"],"corresponding_institution_ids":["https://openalex.org/I188760350"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.4918,"has_fulltext":true,"cited_by_count":1616,"citation_normalized_percentile":{"value":0.95382609,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"367","last_page":"367"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6209999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6209999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10057","display_name":"Face and Expression Recognition","score":0.14920000731945038,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12303","display_name":"Tensor decomposition and applications","score":0.04879999905824661,"subfield":{"id":"https://openalex.org/subfields/2605","display_name":"Computational Mathematics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/non-negative-matrix-factorization","display_name":"Non-negative matrix factorization","score":0.9060477614402771},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7818911075592041},{"id":"https://openalex.org/keywords/initialization","display_name":"Initialization","score":0.6924277544021606},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.687343955039978},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.6474323272705078},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5230692028999329},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.5158747434616089},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5078971982002258},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.47918570041656494},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4124250113964081},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3929392993450165},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3595198392868042}],"concepts":[{"id":"https://openalex.org/C152671427","wikidata":"https://www.wikidata.org/wiki/Q10843505","display_name":"Non-negative matrix factorization","level":4,"score":0.9060477614402771},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7818911075592041},{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.6924277544021606},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.687343955039978},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.6474323272705078},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5230692028999329},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.5158747434616089},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5078971982002258},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.47918570041656494},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4124250113964081},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3929392993450165},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3595198392868042},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015470","descriptor_name":"Leukemia, Myeloid, Acute","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015470","descriptor_name":"Leukemia, Myeloid, Acute","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015470","descriptor_name":"Leukemia, Myeloid, Acute","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054198","descriptor_name":"Precursor Cell Lymphoblastic Leukemia-Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054198","descriptor_name":"Precursor Cell Lymphoblastic Leukemia-Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054198","descriptor_name":"Precursor Cell Lymphoblastic Leukemia-Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-11-367","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-367","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-367","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20598126","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20598126","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:http://www.rian.ie/160620/","is_oa":false,"landing_page_url":"http://hdl.handle.net/10379/11596","pdf_url":null,"source":{"id":"https://openalex.org/S4306400033","display_name":"Arrow@dit (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.353.8012","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.353.8012","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/b2/b8/BMC_Bioinformatics_2010_Jul_2_11_367.tar.gz","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:220ede010be94aeb9e7d1fd1dee1a680","is_oa":false,"landing_page_url":"https://doaj.org/article/220ede010be94aeb9e7d1fd1dee1a680","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 367 (2010)","raw_type":"article"},{"id":"pmh:oai:localhost:11427/14879","is_oa":true,"landing_page_url":"http://hdl.handle.net/11427/14879","pdf_url":null,"source":{"id":"https://openalex.org/S4306402129","display_name":"Open University of Cape Town (University of Cape Town)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157614274","host_organization_name":"University of Cape Town","host_organization_lineage":["https://openalex.org/I157614274"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2912887","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2912887","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.lenus.ie:10147/218132","is_oa":false,"landing_page_url":"http://hdl.handle.net/10147/218132","pdf_url":null,"source":{"id":"https://openalex.org/S4306401756","display_name":"Lenus, The Irish Health Repository (Dr Steevens Hospital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-367","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-367","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-367","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149031002.pdf","grobid_xml":"https://content.openalex.org/works/W2149031002.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1538685017","https://openalex.org/W1548779692","https://openalex.org/W1829361182","https://openalex.org/W1902027874","https://openalex.org/W1914599625","https://openalex.org/W1981276685","https://openalex.org/W1984990881","https://openalex.org/W2015583498","https://openalex.org/W2017288758","https://openalex.org/W2037435943","https://openalex.org/W2059745395","https://openalex.org/W2064690543","https://openalex.org/W2092423825","https://openalex.org/W2096603500","https://openalex.org/W2118718620","https://openalex.org/W2119297694","https://openalex.org/W2130855892","https://openalex.org/W2132692097","https://openalex.org/W2136171036","https://openalex.org/W2136787567","https://openalex.org/W2141225828","https://openalex.org/W2146508253","https://openalex.org/W2146913572","https://openalex.org/W2152320972","https://openalex.org/W2160697532","https://openalex.org/W2165685007","https://openalex.org/W2170968232","https://openalex.org/W2188206772","https://openalex.org/W2582743722","https://openalex.org/W2999905431","https://openalex.org/W3140706748","https://openalex.org/W3143596294","https://openalex.org/W4240429504","https://openalex.org/W4246853483","https://openalex.org/W4405648826"],"related_works":["https://openalex.org/W2101428145","https://openalex.org/W2055537285","https://openalex.org/W2003780581","https://openalex.org/W3023185158","https://openalex.org/W1538254361","https://openalex.org/W1914599625","https://openalex.org/W2127243424","https://openalex.org/W2037504162","https://openalex.org/W3197655446","https://openalex.org/W2338894643"],"abstract_inverted_index":{"BACKGROUND:":[0],"Nonnegative":[1,207],"Matrix":[2,208],"Factorization":[3],"(NMF)":[4],"is":[5,94,146],"an":[6,101],"unsupervised":[7],"learning":[8],"technique":[9],"that":[10,74,127,218],"has":[11],"been":[12,68],"applied":[13],"successfully":[14],"in":[15,30,49,56,190,211,224],"several":[16],"fields,":[17],"including":[18],"signal":[19],"processing,":[20],"face":[21],"recognition":[22],"and":[23,52,61,104,121,145,165,168,183,193,230],"text":[24],"mining.":[25],"Recent":[26],"applications":[27,53],"of":[28,59,161,172,195,206],"NMF":[29,50,65,109,124,163,177,200],"bioinformatics":[31,98],"have":[32,54,67,130,219],"demonstrated":[33],"its":[34],"ability":[35],"to":[36,95,107,118,143,148,151,174,188,216],"extract":[37],"meaningful":[38],"information":[39],"from":[40,235],"high-dimensional":[41],"data":[42,182,232],"such":[43],"as":[44,111,113],"gene":[45],"expression":[46],"microarrays.":[47],"Developments":[48],"theory":[51],"resulted":[55],"a":[57,115,132,159],"variety":[58],"algorithms":[60,164],"methods.":[62,125],"However,":[63],"most":[64],"implementations":[66],"on":[69],"commercial":[70],"platforms,":[71],"while":[72],"those":[73],"are":[75,186,233],"freely":[76],"available":[77,234],"typically":[78],"require":[79],"programming":[80],"skills.":[81],"This":[82],"limits":[83],"their":[84],"use":[85],"by":[86],"the":[87,97,135,170,191,196,204],"wider":[88],"research":[89],"community.":[90],"RESULTS:":[91],"Our":[92],"objective":[93],"provide":[96],"community":[99],"with":[100,114],"open-source,":[102],"easy-to-use":[103],"unified":[105],"interface":[106],"standard":[108],"algorithms,":[110],"well":[112],"simple":[116],"framework":[117],"help":[119,189],"implement":[120],"test":[122],"new":[123,176,222],"For":[126],"purpose,":[128],"we":[129],"developed":[131],"package":[133,139,201],"for":[134],"R/BioConductor":[136],"platform.":[137],"The":[138,199],"ports":[140],"public":[141],"code":[142,229],"R,":[144],"structured":[147],"enable":[149],"users":[150],"easily":[152],"modify":[153],"and/or":[154],"add":[155],"algorithms.":[156],"It":[157],"includes":[158],"number":[160],"published":[162],"initialization":[166],"methods":[167,185,217],"facilitates":[169],"combination":[171],"these":[173],"produce":[175],"strategies.":[178],"Commonly":[179],"used":[180],"benchmark":[181],"visualization":[184],"provided":[187],"comparison":[192],"interpretation":[194],"results.":[197],"CONCLUSIONS:":[198],"helps":[202],"realize":[203],"potential":[205],"Factorization,":[209],"especially":[210],"bioinformatics,":[212],"providing":[213],"easy":[214],"access":[215],"already":[220],"yielded":[221],"insights":[223],"many":[225],"applications.":[226],"Documentation,":[227],"source":[228],"sample":[231],"CRAN.":[236]},"counts_by_year":[{"year":2026,"cited_by_count":43},{"year":2025,"cited_by_count":160},{"year":2024,"cited_by_count":231},{"year":2023,"cited_by_count":189},{"year":2022,"cited_by_count":214},{"year":2021,"cited_by_count":205},{"year":2020,"cited_by_count":150},{"year":2019,"cited_by_count":93},{"year":2018,"cited_by_count":88},{"year":2017,"cited_by_count":93},{"year":2016,"cited_by_count":59},{"year":2015,"cited_by_count":33},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":11}],"updated_date":"2026-05-13T08:25:38.343686","created_date":"2025-10-10T00:00:00"}
