{"id":"https://openalex.org/W2111586671","doi":"https://doi.org/10.1186/1471-2105-11-360","title":"Flexible network reconstruction from relational databases with Cytoscape and CytoSQL","display_name":"Flexible network reconstruction from relational databases with Cytoscape and CytoSQL","publication_year":2010,"publication_date":"2010-07-01","ids":{"openalex":"https://openalex.org/W2111586671","doi":"https://doi.org/10.1186/1471-2105-11-360","mag":"2111586671","pmid":"https://pubmed.ncbi.nlm.nih.gov/20594316"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-360","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-360","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-360","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-360","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024445778","display_name":"Kris Laukens","orcid":"https://orcid.org/0000-0002-8217-2564"},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]},{"id":"https://openalex.org/I4210119540","display_name":"Province of Antwerp","ror":"https://ror.org/022v8s261","country_code":"BE","type":"government","lineage":["https://openalex.org/I4210119540"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Kris Laukens","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Antwerp, Antwerpen, Belgium. kris.laukens@ua.ac.be","Department of Mathematics and Computer Science University of Antwerp Antwerpen Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Antwerp, Antwerpen, Belgium. kris.laukens@ua.ac.be","institution_ids":["https://openalex.org/I149213910","https://openalex.org/I4210119540"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science University of Antwerp Antwerpen Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059136876","display_name":"Jens Hollunder","orcid":"https://orcid.org/0000-0003-3234-6762"},"institutions":[{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I2802017950","display_name":"Vlaams Instituut voor Biotechnologie","ror":"https://ror.org/03xrhmk39","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jens Hollunder","raw_affiliation_strings":["Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium","Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium","institution_ids":["https://openalex.org/I2802017950","https://openalex.org/I4210098178"]},{"raw_affiliation_string":"Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2802017950","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078483041","display_name":"Thanh Hai Dang","orcid":"https://orcid.org/0000-0002-0666-9958"},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Thanh Hai Dang","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","Department of Mathematics and Computer Science University of Antwerp Antwerpen Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science University of Antwerp Antwerpen Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004210367","display_name":"Geert De Jaeger","orcid":"https://orcid.org/0000-0001-6558-5669"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I2802017950","display_name":"Vlaams Instituut voor Biotechnologie","ror":"https://ror.org/03xrhmk39","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Geert De Jaeger","raw_affiliation_strings":["Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium","Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium","institution_ids":["https://openalex.org/I2802017950","https://openalex.org/I4210098178"]},{"raw_affiliation_string":"Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2802017950","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077915624","display_name":"Martin Kuiper","orcid":"https://orcid.org/0000-0002-1171-9876"},"institutions":[{"id":"https://openalex.org/I4210165875","display_name":"NTNU Samfunnsforskning","ror":"https://ror.org/05pv30e80","country_code":"NO","type":"facility","lineage":["https://openalex.org/I4210165875"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I2802017950","display_name":"Vlaams Instituut voor Biotechnologie","ror":"https://ror.org/03xrhmk39","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["BE","NO"],"is_corresponding":false,"raw_author_name":"Martin Kuiper","raw_affiliation_strings":["Department of Biology, NTNU, H\u00f8gskoleringen 5, N-7491, Trondheim, Norway","Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium","Department of Biology, NTNU, Trondheim, Norway","Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Biology, NTNU, H\u00f8gskoleringen 5, N-7491, Trondheim, Norway","institution_ids":["https://openalex.org/I4210165875","https://openalex.org/I204778367"]},{"raw_affiliation_string":"Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052, Ghent, Belgium","institution_ids":["https://openalex.org/I2802017950","https://openalex.org/I4210098178"]},{"raw_affiliation_string":"Department of Biology, NTNU, Trondheim, Norway","institution_ids":[]},{"raw_affiliation_string":"Department of Plant Systems Biology, Flanders Institute for Biotechnology and Department of Molecular Genetics, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2802017950","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042523763","display_name":"Erwin Witters","orcid":null},"institutions":[{"id":"https://openalex.org/I68522396","display_name":"Flemish Institute for Technological Research","ror":"https://ror.org/04gq0w522","country_code":"BE","type":"facility","lineage":["https://openalex.org/I68522396"]},{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Erwin Witters","raw_affiliation_strings":["Department of Biology, University of Antwerp, Groenenborgerlaan 171, B-2020, Antwerpen, Belgium","Flemish Institute for Technological Research (VITO), Boeretang 200, B-2400, Mol, Belgium","Flemish Institute for Technological Research (VITO), Mol, Belgium","Department of Biology, University of Antwerp, Antwerpen, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Antwerp, Groenenborgerlaan 171, B-2020, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]},{"raw_affiliation_string":"Flemish Institute for Technological Research (VITO), Boeretang 200, B-2400, Mol, Belgium","institution_ids":["https://openalex.org/I68522396"]},{"raw_affiliation_string":"Flemish Institute for Technological Research (VITO), Mol, Belgium","institution_ids":["https://openalex.org/I68522396"]},{"raw_affiliation_string":"Department of Biology, University of Antwerp, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010812165","display_name":"A. Verschoren","orcid":null},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Alain Verschoren","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","Department of Mathematics and Computer Science University of Antwerp Antwerpen Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science University of Antwerp Antwerpen Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047520245","display_name":"Koen Van Leemput","orcid":"https://orcid.org/0000-0001-6466-5309"},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Koenraad Van Leemput","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","Department of Mathematics and Computer Science University of Antwerp Antwerpen Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science University of Antwerp Antwerpen Belgium","institution_ids":["https://openalex.org/I149213910"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5024445778"],"corresponding_institution_ids":["https://openalex.org/I149213910","https://openalex.org/I4210119540"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2712,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.59972728,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"1","first_page":"360","last_page":"360"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5826519727706909},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5702759623527527},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4201186001300812},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4129934012889862},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37862151861190796},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35221049189567566},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3349248170852661},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32599228620529175},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22645100951194763},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13743159174919128},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07302024960517883}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5826519727706909},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5702759623527527},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4201186001300812},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4129934012889862},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37862151861190796},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35221049189567566},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3349248170852661},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32599228620529175},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22645100951194763},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13743159174919128},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07302024960517883},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-11-360","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-360","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-360","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20594316","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20594316","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:c:irua:83057","is_oa":false,"landing_page_url":"https://hdl.handle.net/10067/830570151162165141","pdf_url":null,"source":{"id":"https://openalex.org/S4377196495","display_name":"Anet (University of Antwerp)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149213910","host_organization_name":"University of Antwerp","host_organization_lineage":["https://openalex.org/I149213910"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:archive.ugent.be:1038788","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/1038788","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:brage.bibsys.no:11250/2366661","is_oa":true,"landing_page_url":"http://hdl.handle.net/11250/2366661","pdf_url":null,"source":{"id":"https://openalex.org/S4306400255","display_name":"BIBSYS Brage (BIBSYS (Norway))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173212132","host_organization_name":"Vilnius University","host_organization_lineage":["https://openalex.org/I173212132"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"11","raw_type":"Journal article"},{"id":"pmh:oai:doaj.org/article:7e386c70e821454a9894b6dd5ddc5551","is_oa":true,"landing_page_url":"https://doaj.org/article/7e386c70e821454a9894b6dd5ddc5551","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 360 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2910028","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2910028","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-360","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-360","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-360","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111586671.pdf","grobid_xml":"https://content.openalex.org/works/W2111586671.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1835571316","https://openalex.org/W1999895438","https://openalex.org/W2066930318","https://openalex.org/W2097754270","https://openalex.org/W2101791557","https://openalex.org/W2106552363","https://openalex.org/W2114228709","https://openalex.org/W2115829389","https://openalex.org/W2125816119","https://openalex.org/W2132992030","https://openalex.org/W2135857985","https://openalex.org/W2147714160","https://openalex.org/W2159675211","https://openalex.org/W2315135172","https://openalex.org/W3154566661","https://openalex.org/W4241876622","https://openalex.org/W4244148717"],"related_works":["https://openalex.org/W2003932708","https://openalex.org/W2284877871","https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2138102289","https://openalex.org/W1967424056","https://openalex.org/W2118505788","https://openalex.org/W868043274","https://openalex.org/W4254166511","https://openalex.org/W2513523087"],"abstract_inverted_index":{"CytoSQL":[0],"offers":[1],"a":[2],"unified":[3],"approach":[4],"to":[5,13,29],"let":[6],"Cytoscape":[7],"interact":[8],"with":[9],"relational":[10],"databases.":[11],"Thanks":[12],"the":[14,17],"power":[15],"of":[16],"SQL":[18],"syntax,":[19],"this":[20],"tool":[21],"can":[22],"rapidly":[23],"generate":[24],"and":[25],"enrich":[26],"networks":[27],"according":[28],"very":[30],"complex":[31],"criteria.":[32],"The":[33],"plugin":[34],"is":[35],"available":[36],"at":[37],"http://www.ptools.ua.ac.be/CytoSQL.":[38]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
