{"id":"https://openalex.org/W2046485931","doi":"https://doi.org/10.1186/1471-2105-11-358","title":"MetaBar - a tool for consistent contextual data acquisition and standards compliant submission","display_name":"MetaBar - a tool for consistent contextual data acquisition and standards compliant submission","publication_year":2010,"publication_date":"2010-06-30","ids":{"openalex":"https://openalex.org/W2046485931","doi":"https://doi.org/10.1186/1471-2105-11-358","mag":"2046485931","pmid":"https://pubmed.ncbi.nlm.nih.gov/20591175"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-358","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-358","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-358","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-358","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020333059","display_name":"Wolfgang Hankeln","orcid":null},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Hankeln","raw_affiliation_strings":["Max Planck Institute for Marine Microbiology, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","Jacobs University Bremen gGmbH, Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Marine Microbiology, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Jacobs University Bremen gGmbH, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091806083","display_name":"Pier Luigi Buttigieg","orcid":"https://orcid.org/0000-0002-4366-3088"},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pier Luigi Buttigieg","raw_affiliation_strings":["Jacobs University Bremen gGmbH, D-28759, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","Jacobs University Bremen gGmbH, Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jacobs University Bremen gGmbH, D-28759, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Jacobs University Bremen gGmbH, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072485137","display_name":"Dennis Fink","orcid":"https://orcid.org/0000-0003-4865-0072"},"institutions":[{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dennis Fink","raw_affiliation_strings":["Symbiosis Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","Symbiosis Group, Max Planck Institute for Marine Microbiology, Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Symbiosis Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Symbiosis Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014425944","display_name":"Renzo Kottmann","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Renzo Kottmann","raw_affiliation_strings":["Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091885910","display_name":"Pelin Yilmaz","orcid":"https://orcid.org/0000-0003-4724-323X"},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pelin Yilmaz","raw_affiliation_strings":["Jacobs University Bremen gGmbH, D-28759, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","Jacobs University Bremen gGmbH, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jacobs University Bremen gGmbH, D-28759, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Jacobs University Bremen gGmbH, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091470163","display_name":"Frank Oliver Gl\u00f6ckner","orcid":"https://orcid.org/0000-0001-8528-9023"},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Frank Oliver Gl\u00f6ckner","raw_affiliation_strings":["Jacobs University Bremen gGmbH, D-28759, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","Jacobs University Bremen gGmbH, Bremen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jacobs University Bremen gGmbH, D-28759, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Jacobs University Bremen gGmbH, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5091470163"],"corresponding_institution_ids":["https://openalex.org/I193619901","https://openalex.org/I4210103014"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":1184,"currency":"EUR","value_usd":1276},"fwci":9.7028,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.97604302,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11","issue":"1","first_page":"358","last_page":"358"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.7188000082969666,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.7188000082969666,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.05490000173449516,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.05130000039935112,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7679777145385742},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.639049768447876},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5762418508529663},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5688261389732361},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5474846363067627},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5228890776634216},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4283517897129059},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4263955354690552},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4084912836551666},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38310518860816956},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13020092248916626}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7679777145385742},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.639049768447876},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5762418508529663},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5688261389732361},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5474846363067627},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5228890776634216},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4283517897129059},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4263955354690552},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4084912836551666},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38310518860816956},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13020092248916626},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-11-358","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-358","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-358","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20591175","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20591175","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f31713be93784ba1890eb0e215c5c16e","is_oa":true,"landing_page_url":"https://doaj.org/article/f31713be93784ba1890eb0e215c5c16e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 358 (2010)","raw_type":"article"},{"id":"pmh:oai:escidoc.org:escidoc:2485059","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0001-CB0A-0","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2912304","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2912304","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_2485059","is_oa":true,"landing_page_url":"https://hdl.handle.net/21.11116/0000-0001-CB0A-0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-358","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-358","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-358","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.7900000214576721}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"},{"id":"https://openalex.org/F4320334631","display_name":"Natural Environment Research Council","ror":"https://ror.org/02b5d8509"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2046485931.pdf","grobid_xml":"https://content.openalex.org/works/W2046485931.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1490137556","https://openalex.org/W1878193911","https://openalex.org/W1966380925","https://openalex.org/W1969538518","https://openalex.org/W1988794341","https://openalex.org/W1991056282","https://openalex.org/W2011478289","https://openalex.org/W2040704692","https://openalex.org/W2042411773","https://openalex.org/W2091922579","https://openalex.org/W2091940856","https://openalex.org/W2107594154","https://openalex.org/W2111963094","https://openalex.org/W2114200698","https://openalex.org/W2124367500","https://openalex.org/W2130956021","https://openalex.org/W2136198635","https://openalex.org/W2155162332","https://openalex.org/W2156389165","https://openalex.org/W2161062388","https://openalex.org/W2164556117","https://openalex.org/W2171894968","https://openalex.org/W2772934464","https://openalex.org/W3121953277","https://openalex.org/W4211208250"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2095118173","https://openalex.org/W2382021449","https://openalex.org/W2104269053","https://openalex.org/W2106424170","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2768810474","https://openalex.org/W4206575749"],"abstract_inverted_index":{"BACKGROUND:":[0],"Environmental":[1],"sequence":[2,167,247],"datasets":[3],"are":[4],"increasing":[5],"at":[6,117],"an":[7,250],"exponential":[8],"rate;":[9],"however,":[10],"the":[11,77,105,120,126,147,151,171,180,186,204,221,235,256,285],"vast":[12],"majority":[13],"of":[14,39,84,179,183,271,291],"them":[15],"lack":[16],"appropriate":[17],"descriptors":[18],"like":[19],"sampling":[20,272],"location,":[21],"time":[22],"and":[23,36,48,68,82,116,158,166,193,197,241,262,268,284,295],"depth/altitude:":[24],"generally":[25],"referred":[26],"to":[27,57,73,88,98,125,146,170,203,243,249],"as":[28,137,154,156,274,276],"metadata":[29],"or":[30,107],"contextual":[31,60,85,101,148,165,199,244,297],"data.":[32,298],"The":[33,51,209,231,253,280],"consistent":[34,59,78],"capture":[35],"structured":[37,100],"submission":[38,83,169,248,287],"these":[40],"data":[41,46,61,86,102,149,168,200,239,245,266,278,292],"is":[42,65,96,111,218],"crucial":[43],"for":[44,215],"integrated":[45],"analysis":[47],"ecosystems":[49],"modeling.":[50],"application":[52],"MetaBar":[53,64,127,152,195,210,232],"has":[54],"been":[55],"developed,":[56],"support":[58,288],"acquisition.":[62],"RESULTS:":[63],"a":[66,113],"spreadsheet":[67,95],"web-based":[69],"software":[70,233],"tool":[71],"designed":[72],"assist":[74],"users":[75],"in":[76,104,150,201],"acquisition,":[79],"electronic":[80],"storage,":[81],"associated":[87],"their":[89],"samples.":[90],"A":[91],"preconfigured":[92],"Microsoft":[93],"Excel":[94],"used":[97],"initiate":[99],"storage":[103],"field":[106],"laboratory.":[108],"Each":[109],"sample":[110],"given":[112],"unique":[114],"identifier":[115],"any":[118],"stage":[119],"sheets":[121],"can":[122,134],"be":[123,135],"uploaded":[124],"database":[128,153,191,261],"server.":[129],"To":[130],"label":[131],"samples,":[132],"identifiers":[133],"printed":[136],"barcodes.":[138],"An":[139],"intuitive":[140],"web":[141],"interface":[142],"provides":[143],"quick":[144],"access":[145],"well":[155,275],"user":[157],"project":[159],"management":[160],"capabilities.":[161],"Export":[162],"functions":[163],"facilitate":[164],"International":[172],"Nucleotide":[173],"Sequence":[174],"Database":[175],"Collaboration":[176],"(INSDC),":[177],"comprising":[178],"DNA":[181],"DataBase":[182],"Japan":[184],"(DDBJ),":[185],"European":[187],"Molecular":[188],"Biology":[189],"Laboratory":[190],"(EMBL)":[192],"GenBank.":[194],"requests":[196],"stores":[198],"compliance":[202],"Genomic":[205],"Standards":[206],"Consortium":[207],"specifications.":[208],"open":[211],"source":[212],"code":[213],"base":[214],"local":[216],"installation":[217],"available":[219],"under":[220],"GNU":[222],"General":[223],"Public":[224],"License":[225],"version":[226],"3":[227],"(GNU":[228],"GPL3).":[229],"CONCLUSION:":[230],"supports":[234],"typical":[236],"workflow":[237],"from":[238],"acquisition":[240],"field-sampling":[242],"enriched":[246],"INSDC":[251,286],"database.":[252],"integration":[254,267],"with":[255],"megx.net":[257],"marine":[258],"Ecological":[259],"Genomics":[260],"portal":[263],"facilitates":[264],"georeferenced":[265],"metadata-based":[269],"comparisons":[270],"sites":[273],"interactive":[277],"visualization.":[279],"ample":[281],"export":[282],"functionalities":[283],"enable":[289],"exchange":[290],"across":[293],"disciplines":[294],"safeguarding":[296]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
