{"id":"https://openalex.org/W2032166812","doi":"https://doi.org/10.1186/1471-2105-11-353","title":"ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data","display_name":"ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data","publication_year":2010,"publication_date":"2010-06-28","ids":{"openalex":"https://openalex.org/W2032166812","doi":"https://doi.org/10.1186/1471-2105-11-353","mag":"2032166812","pmid":"https://pubmed.ncbi.nlm.nih.gov/20584323"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-353","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-353","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-353","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-353","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040251390","display_name":"John Dittmar","orcid":"https://orcid.org/0000-0002-3820-1612"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John C Dittmar","raw_affiliation_strings":["Columbia University Medical Center, Dept, Genetics & Development, 701 West 168th Street, New York, NY 10032-2704, USA","Dept. of Biological Sciences, Columbia University, New York USA"],"affiliations":[{"raw_affiliation_string":"Columbia University Medical Center, Dept, Genetics & Development, 701 West 168th Street, New York, NY 10032-2704, USA","institution_ids":[]},{"raw_affiliation_string":"Dept. of Biological Sciences, Columbia University, New York USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007261850","display_name":"Robert J. D. Reid","orcid":"https://orcid.org/0000-0002-7424-3537"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert JD Reid","raw_affiliation_strings":["Dept. Genetics & Development, Columbia University Medical Center, 701 West 168th Street, New York, NY, 10032-2704, USA","Dept. Genetics & Development, Columbia University Medical Center, New York, USA"],"affiliations":[{"raw_affiliation_string":"Dept. Genetics & Development, Columbia University Medical Center, 701 West 168th Street, New York, NY, 10032-2704, USA","institution_ids":["https://openalex.org/I2799503643"]},{"raw_affiliation_string":"Dept. Genetics & Development, Columbia University Medical Center, New York, USA","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028622476","display_name":"Rodney Rothstein","orcid":"https://orcid.org/0000-0002-4107-9654"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rodney Rothstein","raw_affiliation_strings":["Dept. Genetics & Development, Columbia University Medical Center, 701 West 168th Street, New York, NY, 10032-2704, USA","Dept. Genetics & Development, Columbia University Medical Center, New York, USA"],"affiliations":[{"raw_affiliation_string":"Dept. Genetics & Development, Columbia University Medical Center, 701 West 168th Street, New York, NY, 10032-2704, USA","institution_ids":["https://openalex.org/I2799503643"]},{"raw_affiliation_string":"Dept. Genetics & Development, Columbia University Medical Center, New York, USA","institution_ids":["https://openalex.org/I2799503643"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5040251390"],"corresponding_institution_ids":["https://openalex.org/I78577930"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.491,"has_fulltext":true,"cited_by_count":103,"citation_normalized_percentile":{"value":0.81018156,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"353","last_page":"353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9435999989509583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9435999989509583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.7248672246932983},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.682727038860321},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6391406059265137},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.6371379494667053},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6230801343917847},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.5241708755493164},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4338380992412567},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3343164622783661},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.26856905221939087}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.7248672246932983},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.682727038860321},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6391406059265137},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6371379494667053},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6230801343917847},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.5241708755493164},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4338380992412567},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3343164622783661},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.26856905221939087},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-11-353","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-353","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-353","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20584323","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20584323","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:academiccommons.columbia.edu:10.7916/D8HH6HF5","is_oa":false,"landing_page_url":"https://doi.org/10.7916/D8HH6HF5","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:doaj.org/article:c499e34ce31146d4828f49cd4e900987","is_oa":true,"landing_page_url":"https://doaj.org/article/c499e34ce31146d4828f49cd4e900987","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 353 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2909220","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2909220","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"doi:10.7916/d8hh6hf5","is_oa":true,"landing_page_url":"https://doi.org/10.7916/d8hh6hf5","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-353","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-353","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-353","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3077134293","display_name":null,"funder_award_id":"GM50237","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4515052424","display_name":null,"funder_award_id":"GM008798","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6377879254","display_name":null,"funder_award_id":"CA009503","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2032166812.pdf","grobid_xml":"https://content.openalex.org/works/W2032166812.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W147290053","https://openalex.org/W204275195","https://openalex.org/W1972978214","https://openalex.org/W2013952758","https://openalex.org/W2020720070","https://openalex.org/W2034016149","https://openalex.org/W2037586865","https://openalex.org/W2041184037","https://openalex.org/W2050721857","https://openalex.org/W2062989416","https://openalex.org/W2065304353","https://openalex.org/W2067163733","https://openalex.org/W2067305633","https://openalex.org/W2099537933","https://openalex.org/W2103243650","https://openalex.org/W2108543631","https://openalex.org/W2116117181","https://openalex.org/W2126552603","https://openalex.org/W2130907642","https://openalex.org/W2131376751","https://openalex.org/W2138825607","https://openalex.org/W2145224695","https://openalex.org/W2145908578","https://openalex.org/W2150749732","https://openalex.org/W2159460045","https://openalex.org/W2167869241","https://openalex.org/W2792718482","https://openalex.org/W4298861651"],"related_works":["https://openalex.org/W1516095885","https://openalex.org/W4231704780","https://openalex.org/W2158573927","https://openalex.org/W2108921801","https://openalex.org/W1981336497","https://openalex.org/W4206079007","https://openalex.org/W2398058485","https://openalex.org/W254965819","https://openalex.org/W4225274103","https://openalex.org/W2013728941"],"abstract_inverted_index":{"ScreenMill":[0,14,25,32],"automates":[1],"quantification,":[2],"analysis":[3],"and":[4,37],"visualization":[5],"of":[6,31,40],"high-throughput":[7],"screen":[8],"data.":[9],"The":[10],"algorithms":[11],"implemented":[12],"in":[13],"are":[15],"transparent":[16],"allowing":[17],"users":[18],"to":[19],"be":[20],"confident":[21],"about":[22],"the":[23,29],"results":[24],"produces.":[26],"Taken":[27],"together,":[28],"tools":[30],"offer":[33],"biologists":[34],"a":[35],"simple":[36],"flexible":[38],"way":[39],"analyzing":[41],"their":[42],"data,":[43],"without":[44],"requiring":[45],"programming":[46],"skills.":[47]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
