{"id":"https://openalex.org/W2146463649","doi":"https://doi.org/10.1186/1471-2105-11-34","title":"OLS Dialog: An open-source front end to the Ontology Lookup Service","display_name":"OLS Dialog: An open-source front end to the Ontology Lookup Service","publication_year":2010,"publication_date":"2010-01-17","ids":{"openalex":"https://openalex.org/W2146463649","doi":"https://doi.org/10.1186/1471-2105-11-34","mag":"2146463649","pmid":"https://pubmed.ncbi.nlm.nih.gov/20078892"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-34","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-34","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-34","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-34","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028703668","display_name":"Harald Barsnes","orcid":"https://orcid.org/0000-0001-9696-2148"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Harald Barsnes","raw_affiliation_strings":["Department of Informatics, University of Bergen, Bergen, Norway. harald.barsnes@ii.uib.no","Department of Informatics, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen, Bergen, Norway. harald.barsnes@ii.uib.no","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014547943","display_name":"Richard G. C\u00f4t\u00e9","orcid":"https://orcid.org/0009-0005-8846-9202"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard G C\u00f4t\u00e9","raw_affiliation_strings":["EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038734200","display_name":"Ingvar Eidhammer","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ingvar Eidhammer","raw_affiliation_strings":["Department of Informatics, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038356859","display_name":"Lennart Martens","orcid":"https://orcid.org/0000-0003-4277-658X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210151194","display_name":"VIB-UGent Center for Medical Biotechnology","ror":"https://ror.org/04hbttm44","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210151194"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Lennart Martens","raw_affiliation_strings":["Department of Biochemistry, Ghent University, B-9000, Ghent, Belgium","Department of Medical Protein Research, VIB, B-9000, Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Ghent University, B-9000, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Medical Protein Research, VIB, B-9000, Ghent, Belgium","institution_ids":["https://openalex.org/I4210151194"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028703668"],"corresponding_institution_ids":["https://openalex.org/I4432739"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.2248,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.7863963,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"34","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9546999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9546999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.014499999582767487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.005499999970197678,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.84829181432724},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7538007497787476},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.698142945766449},{"id":"https://openalex.org/keywords/dialog-box","display_name":"Dialog box","score":0.697257936000824},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.5748092532157898},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5448174476623535},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5169217586517334},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.5120158791542053},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.37334978580474854}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.84829181432724},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7538007497787476},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.698142945766449},{"id":"https://openalex.org/C173853756","wikidata":"https://www.wikidata.org/wiki/Q86915","display_name":"Dialog box","level":2,"score":0.697257936000824},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.5748092532157898},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5448174476623535},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5169217586517334},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.5120158791542053},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.37334978580474854},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-11-34","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-34","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-34","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20078892","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20078892","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:archive.ugent.be:915124","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/915124","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:bora.uib.no:1956/4016","is_oa":true,"landing_page_url":"http://hdl.handle.net/1956/4016","pdf_url":null,"source":{"id":"https://openalex.org/S4306400085","display_name":"Bergen Open Research Archive (BORA) (University of Bergen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4432739","host_organization_name":"University of Bergen","host_organization_lineage":["https://openalex.org/I4432739"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:doaj.org/article:1d5d73200e44427ea59eb301ae946e3a","is_oa":true,"landing_page_url":"https://doaj.org/article/1d5d73200e44427ea59eb301ae946e3a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 34 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2823706","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2823706","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-34","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-34","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-34","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146463649.pdf","grobid_xml":"https://content.openalex.org/works/W2146463649.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1871852719","https://openalex.org/W1998671175","https://openalex.org/W1999615477","https://openalex.org/W2051810299","https://openalex.org/W2096939566","https://openalex.org/W2110680028","https://openalex.org/W2150818376","https://openalex.org/W2167865654","https://openalex.org/W2411540415"],"related_works":["https://openalex.org/W2284058717","https://openalex.org/W2159818280","https://openalex.org/W2374991871","https://openalex.org/W2114954739","https://openalex.org/W1794266373","https://openalex.org/W2140329110","https://openalex.org/W2889792096","https://openalex.org/W1506177826","https://openalex.org/W1830516355","https://openalex.org/W2158851296"],"abstract_inverted_index":{"BACKGROUND:":[0],"With":[1],"the":[2,37,59,71,82,85,89,95,103,130,135,146,184,188,205,211],"growing":[3],"amount":[4],"of":[5,34,84,148],"biomedical":[6,212],"data":[7,19,38,53,149,206],"available":[8],"in":[9,20,24,88,199],"public":[10],"databases":[11],"it":[12,46,155,192],"has":[13],"become":[14],"increasingly":[15],"important":[16],"to":[17,26,30,49,80,129,157,183,194,210],"annotate":[18],"a":[21,67,108,125,177],"consistent":[22],"way":[23],"order":[25,79],"allow":[27],"easy":[28],"access":[29],"this":[31],"rich":[32],"source":[33,180],"information.":[35],"Annotating":[36],"using":[39,102,150],"controlled":[40,61,91,151,161,196],"vocabulary":[41,62,92,152,162,197],"terms":[42,63,163],"and":[43,51,159],"ontologies":[44],"makes":[45,191,204],"much":[47],"easier":[48],"compare":[50],"analyze":[52],"from":[54],"different":[55],"sources.":[56],"However,":[57,101],"finding":[58],"correct":[60,86,90],"can":[64,139],"sometimes":[65],"be":[66,140],"difficult":[68],"task":[69],"for":[70,116],"end":[72,128,182],"user":[73],"annotating":[74],"these":[75],"data.":[76],"RESULTS:":[77],"In":[78],"facilitate":[81],"location":[83],"term":[87],"or":[93,172],"ontology,":[94],"Ontology":[96,104,131,185],"Lookup":[97,105,132,186],"Service":[98,106],"was":[99],"created.":[100],"as":[107],"web":[109,170],"service":[110],"is":[111],"not":[112],"always":[113],"feasible,":[114],"especially":[115],"researchers":[117],"without":[118,164],"bioinformatics":[119],"support.":[120],"We":[121],"have":[122],"therefore":[123],"created":[124],"Java":[126],"front":[127,181],"Service,":[133,187],"called":[134],"OLS":[136,189],"Dialog,":[137],"which":[138,202],"plugged":[141],"into":[142],"any":[143,166],"application":[144],"requiring":[145,165],"annotation":[147],"terms,":[153],"making":[154],"possible":[156],"find":[158],"use":[160],"additional":[167],"knowledge":[168],"about":[169],"services":[171],"ontology":[173],"formats.":[174],"CONCLUSIONS:":[175],"As":[176],"user-friendly":[178],"open":[179],"Dialog":[190],"straightforward":[193],"include":[195],"support":[198],"third-party":[200],"tools,":[201],"ultimately":[203],"even":[207],"more":[208],"valuable":[209],"community.":[213]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
