{"id":"https://openalex.org/W2086443788","doi":"https://doi.org/10.1186/1471-2105-11-328","title":"MimoSA: a system for minimotif annotation","display_name":"MimoSA: a system for minimotif annotation","publication_year":2010,"publication_date":"2010-06-16","ids":{"openalex":"https://openalex.org/W2086443788","doi":"https://doi.org/10.1186/1471-2105-11-328","mag":"2086443788","pmid":"https://pubmed.ncbi.nlm.nih.gov/20565705"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-328","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-328","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-328","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-328","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103333668","display_name":"Jay Vyas","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jay Vyas","raw_affiliation_strings":["Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave. Farmington, CT 06030-3305, USA","Department of Molecular Microbial and Structural Biology, University of Connecticut Health Center, Farmington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave. Farmington, CT 06030-3305, USA","institution_ids":["https://openalex.org/I75929689"]},{"raw_affiliation_string":"Department of Molecular Microbial and Structural Biology, University of Connecticut Health Center, Farmington, USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071595458","display_name":"Ronald J. Nowling","orcid":"https://orcid.org/0000-0002-2757-9986"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ronald J Nowling","raw_affiliation_strings":["Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave., Farmington, CT, 06030-3305, USA","Department of Molecular Microbial and Structural Biology, University of Connecticut Health Center, Farmington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave., Farmington, CT, 06030-3305, USA","institution_ids":["https://openalex.org/I75929689"]},{"raw_affiliation_string":"Department of Molecular Microbial and Structural Biology, University of Connecticut Health Center, Farmington, USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026382150","display_name":"Thomas Meusburger","orcid":null},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas Meusburger","raw_affiliation_strings":["School of Life Sciences, University of Nevada Las Vegas, 4505 Maryland Pkwy, Las Vegas, NV, 89154-4004, USA","School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, University of Nevada Las Vegas, 4505 Maryland Pkwy, Las Vegas, NV, 89154-4004, USA","institution_ids":["https://openalex.org/I133999245"]},{"raw_affiliation_string":"School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, USA","institution_ids":["https://openalex.org/I133999245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086480463","display_name":"David P. Sargeant","orcid":null},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Sargeant","raw_affiliation_strings":["School of Life Sciences, University of Nevada Las Vegas, 4505 Maryland Pkwy, Las Vegas, NV, 89154-4004, USA","School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, University of Nevada Las Vegas, 4505 Maryland Pkwy, Las Vegas, NV, 89154-4004, USA","institution_ids":["https://openalex.org/I133999245"]},{"raw_affiliation_string":"School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, USA","institution_ids":["https://openalex.org/I133999245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067316842","display_name":"Krishna Kadaveru","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Krishna Kadaveru","raw_affiliation_strings":["Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave., Farmington, CT, 06030-3305, USA","Department of Molecular Microbial and Structural Biology, University of Connecticut Health Center, Farmington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave., Farmington, CT, 06030-3305, USA","institution_ids":["https://openalex.org/I75929689"]},{"raw_affiliation_string":"Department of Molecular Microbial and Structural Biology, University of Connecticut Health Center, Farmington, USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073683942","display_name":"Michael R. Gryk","orcid":"https://orcid.org/0000-0002-3483-8384"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael R Gryk","raw_affiliation_strings":["Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave., Farmington, CT, 06030-3305, USA","Department of Molecular Microbial and Structural Biology, University of Connecticut Health Center, Farmington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave., Farmington, CT, 06030-3305, USA","institution_ids":["https://openalex.org/I75929689"]},{"raw_affiliation_string":"Department of Molecular Microbial and Structural Biology, University of Connecticut Health Center, Farmington, USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007900967","display_name":"Vamsi Kundeti","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vamsi Kundeti","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, 371 Fairfield Rd, Storrs, CT, 06269-2155, USA","Dept of Computer Science and Engineering, University of Connecticut, Storrs, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, 371 Fairfield Rd, Storrs, CT, 06269-2155, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Dept of Computer Science and Engineering, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034177039","display_name":"Sanguthevar Rajasekaran","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanguthevar Rajasekaran","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, 371 Fairfield Rd, Storrs, CT, 06269-2155, USA","Dept of Computer Science and Engineering, University of Connecticut, Storrs, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, 371 Fairfield Rd, Storrs, CT, 06269-2155, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Dept of Computer Science and Engineering, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020526599","display_name":"Martin R. Schiller","orcid":"https://orcid.org/0000-0003-1671-6823"},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Martin R Schiller","raw_affiliation_strings":["Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave., Farmington, CT, 06030-3305, USA","School of Life Sciences, University of Nevada Las Vegas, 4505 Maryland Pkwy, Las Vegas, NV, 89154-4004, USA","University of Connecticut Health Center","University of Nevada, Las Vegas"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave., Farmington, CT, 06030-3305, USA","institution_ids":["https://openalex.org/I75929689"]},{"raw_affiliation_string":"School of Life Sciences, University of Nevada Las Vegas, 4505 Maryland Pkwy, Las Vegas, NV, 89154-4004, USA","institution_ids":["https://openalex.org/I133999245"]},{"raw_affiliation_string":"University of Connecticut Health Center","institution_ids":["https://openalex.org/I75929689"]},{"raw_affiliation_string":"University of Nevada, Las Vegas","institution_ids":["https://openalex.org/I133999245"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5020526599"],"corresponding_institution_ids":["https://openalex.org/I133999245","https://openalex.org/I75929689"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6807,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.69580565,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"11","issue":"1","first_page":"328","last_page":"328"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9298999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9298999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.006399999838322401,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.0044999998062849045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.9359444379806519},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6985604166984558},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5259642601013184},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5012352466583252},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.4789572060108185},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47414371371269226},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.47021177411079407},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.45680707693099976},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3255622386932373},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2722787857055664},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21642673015594482},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17343702912330627}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.9359444379806519},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6985604166984558},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5259642601013184},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5012352466583252},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.4789572060108185},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47414371371269226},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.47021177411079407},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45680707693099976},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3255622386932373},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2722787857055664},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21642673015594482},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17343702912330627},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-11-328","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-328","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-328","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20565705","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20565705","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digitalscholarship.unlv.edu:sls_fac_articles-1433","is_oa":true,"landing_page_url":"https://digitalscholarship.unlv.edu/sls_fac_articles/152","pdf_url":null,"source":{"id":"https://openalex.org/S4377196371","display_name":"Digital Scholarship - UNLV (University of Nevada Reno)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134113660","host_organization_name":"University of Nevada, Reno","host_organization_lineage":["https://openalex.org/I134113660"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Life Sciences Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:1dce432d09994222b8fe21111a1338e8","is_oa":false,"landing_page_url":"https://doaj.org/article/1dce432d09994222b8fe21111a1338e8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 328 (2010)","raw_type":"article"},{"id":"pmh:oai:oasis.library.unlv.edu:sls_fac_articles-1433","is_oa":true,"landing_page_url":"https://oasis.library.unlv.edu/sls_fac_articles/152","pdf_url":null,"source":{"id":"https://openalex.org/S4377196371","display_name":"Digital Scholarship - UNLV (University of Nevada Reno)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134113660","host_organization_name":"University of Nevada, Reno","host_organization_lineage":["https://openalex.org/I134113660"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Life Sciences Faculty Research","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2905367","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2905367","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-328","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-328","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-328","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6899999976158142,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2086443788.pdf","grobid_xml":"https://content.openalex.org/works/W2086443788.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1970279759","https://openalex.org/W2009940763","https://openalex.org/W2029401739","https://openalex.org/W2053673723","https://openalex.org/W2078381702","https://openalex.org/W2085037886","https://openalex.org/W2102697952","https://openalex.org/W2102906365","https://openalex.org/W2105686031","https://openalex.org/W2120649972","https://openalex.org/W2138675533","https://openalex.org/W2146573379","https://openalex.org/W2148781989","https://openalex.org/W2153693245","https://openalex.org/W2161271012","https://openalex.org/W2162172965","https://openalex.org/W2168514491","https://openalex.org/W2168905447","https://openalex.org/W2916483810","https://openalex.org/W4250681842"],"related_works":["https://openalex.org/W2033835987","https://openalex.org/W4248750016","https://openalex.org/W4205092877","https://openalex.org/W1824784554","https://openalex.org/W2169589518","https://openalex.org/W2086443788","https://openalex.org/W3141940143","https://openalex.org/W1979295894","https://openalex.org/W1561860948","https://openalex.org/W2904651995"],"abstract_inverted_index":{"BACKGROUND:":[0],"Minimotifs":[1],"are":[2,10,19,25,28],"short":[3],"peptide":[4],"sequences":[5],"within":[6],"one":[7],"protein,":[8],"which":[9,37,151],"recognized":[11],"by":[12,199],"other":[13,216],"proteins":[14],"or":[15],"molecules.":[16],"While":[17],"there":[18],"now":[20],"several":[21],"minimotif":[22,79,93,172,206,235,263],"databases,":[23],"they":[24],"incomplete.":[26],"There":[27],"reports":[29],"of":[30,78,99,108,120,140,171,176,189,194,203,262],"many":[31],"minimotifs":[32,46,63,121,178],"in":[33,125],"the":[34,82,89,100,113,126,130,180,187,201,240],"primary":[35],"literature,":[36],"have":[38,87,245],"yet":[39],"to":[40,48,66,215,274,280],"be":[41,49,272],"annotated,":[42],"while":[43],"entirely":[44],"novel":[45],"continue":[47],"published":[50],"on":[51,154],"a":[52,68,145,165,224,257],"weekly":[53],"basis.":[54],"Our":[55],"recently":[56],"proposed":[57],"function":[58],"and":[59,76,106,117,122,138,208,237],"sequence":[60],"syntax":[61],"for":[62,92,142,197],"enables":[64,112,174],"us":[65],"build":[67],"general":[69],"tool":[70],"that":[71,219,233,251],"will":[72],"facilitate":[73],"structured":[74],"annotation":[75,107,143,170,217,236],"management":[77,98],"data":[80],"from":[81],"biomedical":[83],"literature.":[84],"RESULTS:":[85],"We":[86,244],"built":[88,246],"MimoSA":[90,111,195,211,228,247],"application":[91,96,232,250],"annotation.":[94,190],"The":[95,157,191],"supports":[97],"Minimotif":[101,241],"Miner":[102,242],"database,":[103],"literature":[104,131,222],"tracking,":[105],"new":[109,177],"minimotifs.":[110],"visualization,":[114,207],"organization,":[115],"selection":[116],"editing":[118],"functions":[119,202],"their":[123],"attributes":[124,173],"MnM":[127,181],"database.":[128,182,226,243],"For":[129],"components,":[132],"Mimosa":[133],"provides":[134],"paper":[135,158,204],"status":[136],"tracking":[137],"scoring":[139,159,255],"papers":[141,277],"through":[144],"freely":[146],"available":[147,163],"machine":[148],"learning":[149],"approach,":[150],"is":[152,161,212,229],"based":[153],"word":[155],"correlation.":[156],"algorithm":[160],"also":[162],"as":[164,248],"separate":[166],"program,":[167],"TextMine.":[168],"Form-driven":[169],"entry":[175],"into":[179,223],"Several":[183],"supporting":[184],"features":[185],"increase":[186],"efficiency":[188],"layered":[192],"architecture":[193],"allows":[196],"extensibility":[198],"separating":[200],"scoring,":[205],"database":[209],"management.":[210],"readily":[213],"adaptable":[214],"efforts":[218],"manually":[220],"curate":[221],"MySQL":[225],"CONCLUSIONS:":[227],"an":[230,249,267],"extensible":[231],"facilitates":[234],"integrates":[238,252],"with":[239,256,278],"dynamic":[253],"abstract":[254],"high":[258],"performance":[259],"relational":[260],"model":[261],"syntax.":[264],"MimoSA's":[265],"TextMine,":[266],"efficient":[268],"paper-scoring":[269],"algorithm,":[270],"can":[271],"used":[273],"dynamically":[275],"rank":[276],"respect":[279],"context.":[281]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}