{"id":"https://openalex.org/W2062354928","doi":"https://doi.org/10.1186/1471-2105-11-324","title":"Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests","display_name":"Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests","publication_year":2010,"publication_date":"2010-06-15","ids":{"openalex":"https://openalex.org/W2062354928","doi":"https://doi.org/10.1186/1471-2105-11-324","mag":"2062354928","pmid":"https://pubmed.ncbi.nlm.nih.gov/20550700"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-324","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-324","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-324","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-324","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071739266","display_name":"Sophie S. Abby","orcid":"https://orcid.org/0000-0002-5231-3346"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Sophie S Abby","raw_affiliation_strings":["Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1; CNRS; INRIA; UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, 43 boulevard du 11 novembre 1918, F-69622 Villeurbanne, France","UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon","Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","INRIA"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1; CNRS; INRIA; UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, 43 boulevard du 11 novembre 1918, F-69622 Villeurbanne, France","institution_ids":[]},{"raw_affiliation_string":"UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"INRIA","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026210731","display_name":"\u00c9ric Tannier","orcid":"https://orcid.org/0000-0002-3681-7536"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Eric Tannier","raw_affiliation_strings":["CNRS; INRIA; UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","INRIA","UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon","Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France"],"affiliations":[{"raw_affiliation_string":"CNRS; INRIA; UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"INRIA","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052681801","display_name":"Manolo Gouy","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Manolo Gouy","raw_affiliation_strings":["CNRS; INRIA; UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","INRIA","Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon"],"affiliations":[{"raw_affiliation_string":"CNRS; INRIA; UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"INRIA","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011691995","display_name":"Vincent Daubin","orcid":"https://orcid.org/0000-0001-8269-9430"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Daubin","raw_affiliation_strings":["CNRS; INRIA; UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon","INRIA","Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France"],"affiliations":[{"raw_affiliation_string":"CNRS; INRIA; UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon; Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"UMR 5558, Laboratoire de Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134"]},{"raw_affiliation_string":"INRIA","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1, 43 boulevard du 11 novembre 1918, F-69622, Villeurbanne, France","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5071739266"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1326498283","https://openalex.org/I4210135640"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.253,"has_fulltext":true,"cited_by_count":64,"citation_normalized_percentile":{"value":0.92353408,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"324","last_page":"324"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.9108256101608276},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.7776836156845093},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.5644396543502808},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5204837322235107},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.4853586256504059},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4824524521827698},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43896132707595825},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.4292076528072357},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.42578476667404175},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4166385531425476},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.4134325385093689},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39446699619293213},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3907037675380707},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26365476846694946},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18194043636322021},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.09527325630187988}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.9108256101608276},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.7776836156845093},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.5644396543502808},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5204837322235107},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.4853586256504059},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4824524521827698},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43896132707595825},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.4292076528072357},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.42578476667404175},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4166385531425476},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.4134325385093689},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39446699619293213},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3907037675380707},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26365476846694946},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18194043636322021},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.09527325630187988},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-324","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-324","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-324","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20550700","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20550700","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:inria-00527151v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00527151","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.biomedcentral.com/content/pdf/1471-2105-11-324.pdf","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:49dc1829b8a446eba55b73785b7a290f","is_oa":true,"landing_page_url":"https://doaj.org/article/49dc1829b8a446eba55b73785b7a290f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 324 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2905365","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2905365","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-324","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-324","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-324","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7599999904632568,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G191198116","display_name":null,"funder_award_id":"011-03","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320326804","display_name":"Universit\u00e9 de Lyon","ror":"https://ror.org/01rk35k63"},{"id":"https://openalex.org/F4320335860","display_name":"Institut National de Physique Nucl\u00e9aire et de Physique des Particules","ror":"https://ror.org/03fd77x13"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2062354928.pdf","grobid_xml":"https://content.openalex.org/works/W2062354928.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1531451051","https://openalex.org/W1571205912","https://openalex.org/W1633681515","https://openalex.org/W1776424232","https://openalex.org/W1799812931","https://openalex.org/W1829693430","https://openalex.org/W1970668638","https://openalex.org/W2017500947","https://openalex.org/W2017519756","https://openalex.org/W2034295560","https://openalex.org/W2037667459","https://openalex.org/W2044281191","https://openalex.org/W2051161693","https://openalex.org/W2062018285","https://openalex.org/W2063936708","https://openalex.org/W2076453436","https://openalex.org/W2078969200","https://openalex.org/W2080787406","https://openalex.org/W2092762915","https://openalex.org/W2096977241","https://openalex.org/W2098558111","https://openalex.org/W2110105435","https://openalex.org/W2110263284","https://openalex.org/W2112956791","https://openalex.org/W2123305821","https://openalex.org/W2150270014","https://openalex.org/W2160690190","https://openalex.org/W2168198916","https://openalex.org/W2169444195"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W2607237371","https://openalex.org/W3088015816","https://openalex.org/W2800044728","https://openalex.org/W4287661213","https://openalex.org/W3106839334","https://openalex.org/W4205904230","https://openalex.org/W2363720861","https://openalex.org/W4205930990","https://openalex.org/W2604174992"],"abstract_inverted_index":{"The":[0],"ability":[1],"of":[2,13,38],"Prunier":[3,68],"to":[4,22,29,49,71],"take":[5],"into":[6],"account":[7],"branch":[8],"support":[9],"in":[10,18,20,25,27,64,92],"the":[11,50,55,59,65,95,99],"process":[12],"reconciliation":[14],"allows":[15],"a":[16,35,41,73,78],"gain":[17],"complexity,":[19],"comparison":[21,28],"EEEP,":[23],"and":[24,83,98],"accuracy":[26],"RIATA-HGT.":[30],"Prunier's":[31],"greedy":[32],"algorithm":[33],"proposes":[34],"single":[36],"scenario":[37,74],"LGT":[39],"for":[40],"gene":[42],"family,":[43],"but":[44],"its":[45],"quality":[46],"always":[47],"compares":[48],"best":[51],"solutions":[52],"provided":[53],"by":[54],"other":[56],"algorithms.":[57],"When":[58],"root":[60,76],"position":[61],"is":[62,69,90,104],"uncertain":[63],"species":[66],"tree,":[67],"able":[70],"infer":[72],"per":[75],"at":[77],"limited":[79],"additional":[80],"computational":[81],"cost":[82],"can":[84],"easily":[85],"run":[86],"on":[87],"large":[88],"datasets.Prunier":[89],"implemented":[91],"C++,":[93],"using":[94],"Bio++":[96],"library":[97],"phylogeny":[100],"program":[101],"Treefinder.":[102],"It":[103],"available":[105],"at:":[106],"http://pbil.univ-lyon1.fr/software/prunier.":[107]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}