{"id":"https://openalex.org/W2104699529","doi":"https://doi.org/10.1186/1471-2105-11-311","title":"FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases","display_name":"FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases","publication_year":2010,"publication_date":"2010-06-09","ids":{"openalex":"https://openalex.org/W2104699529","doi":"https://doi.org/10.1186/1471-2105-11-311","mag":"2104699529","pmid":"https://pubmed.ncbi.nlm.nih.gov/20534127"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-311","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-311","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-311","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-311","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045984899","display_name":"Stephen J. Goodswen","orcid":"https://orcid.org/0000-0001-6184-3157"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I90745801","display_name":"University of New England","ror":"https://ror.org/04r659a56","country_code":"AU","type":"education","lineage":["https://openalex.org/I90745801"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Stephen J Goodswen","raw_affiliation_strings":["CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, QLD 4810, Australia","Centre for Genetic Analysis and Applications, University of New England, Armidale, Australia","CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, QLD 4810, Australia","institution_ids":[]},{"raw_affiliation_string":"Centre for Genetic Analysis and Applications, University of New England, Armidale, Australia","institution_ids":["https://openalex.org/I90745801"]},{"raw_affiliation_string":"CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, Australia","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050790593","display_name":"Cedric Gondro","orcid":"https://orcid.org/0000-0003-0666-656X"},"institutions":[{"id":"https://openalex.org/I90745801","display_name":"University of New England","ror":"https://ror.org/04r659a56","country_code":"AU","type":"education","lineage":["https://openalex.org/I90745801"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Cedric Gondro","raw_affiliation_strings":["Centre for Genetic Analysis and Applications, University of New England, Armidale, NSW, 2351, Australia","Centre for Genetic Analysis and Applications, University of New England, Armidale, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Genetic Analysis and Applications, University of New England, Armidale, NSW, 2351, Australia","institution_ids":["https://openalex.org/I90745801"]},{"raw_affiliation_string":"Centre for Genetic Analysis and Applications, University of New England, Armidale, Australia","institution_ids":["https://openalex.org/I90745801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088788062","display_name":"Nathan S. Watson\u2010Haigh","orcid":"https://orcid.org/0000-0002-7935-6151"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nathan S Watson-Haigh","raw_affiliation_strings":["CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, QLD, 4810, Australia","CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, QLD, 4810, Australia","institution_ids":["https://openalex.org/I1292875679"]},{"raw_affiliation_string":"CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, Australia","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036656399","display_name":"Haja N. Kadarmideen","orcid":"https://orcid.org/0000-0001-6294-382X"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Haja N Kadarmideen","raw_affiliation_strings":["CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, QLD, 4810, Australia","CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, QLD, 4810, Australia","institution_ids":["https://openalex.org/I1292875679"]},{"raw_affiliation_string":"CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, Australia","institution_ids":["https://openalex.org/I1292875679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5045984899"],"corresponding_institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I90745801"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.9035,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.86927361,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"311","last_page":"311"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.23999999463558197,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.23999999463558197,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.11509999632835388,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.09300000220537186,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.9337425231933594},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.679408073425293},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.6308668255805969},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.617231011390686},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5726982951164246},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.5592519640922546},{"id":"https://openalex.org/keywords/snp-genotyping","display_name":"SNP genotyping","score":0.4902406334877014},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.48832032084465027},{"id":"https://openalex.org/keywords/dbsnp","display_name":"dbSNP","score":0.42426198720932007},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.412830650806427},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.410994291305542},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35141342878341675},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33683639764785767},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2905285358428955},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.28352272510528564},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2762315273284912},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2297975718975067},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17514103651046753},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15987160801887512},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1258334219455719},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11835166811943054}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.9337425231933594},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.679408073425293},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.6308668255805969},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.617231011390686},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5726982951164246},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.5592519640922546},{"id":"https://openalex.org/C163691529","wikidata":"https://www.wikidata.org/wiki/Q7391886","display_name":"SNP genotyping","level":5,"score":0.4902406334877014},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.48832032084465027},{"id":"https://openalex.org/C35794970","wikidata":"https://www.wikidata.org/wiki/Q5243761","display_name":"dbSNP","level":5,"score":0.42426198720932007},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.412830650806427},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.410994291305542},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35141342878341675},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33683639764785767},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2905285358428955},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.28352272510528564},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2762315273284912},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2297975718975067},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17514103651046753},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15987160801887512},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1258334219455719},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11835166811943054},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-11-311","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-311","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-311","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20534127","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20534127","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digital.library.adelaide.edu.au:2440/88287","is_oa":true,"landing_page_url":"http://hdl.handle.net/2440/88287","pdf_url":null,"source":{"id":"https://openalex.org/S4306401835","display_name":"Adelaide Research & Scholarship (AR&S) (University of Adelaide)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5681781","host_organization_name":"The University of Adelaide","host_organization_lineage":["https://openalex.org/I5681781"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.biomedcentral.com/1471-2105/11/311","raw_type":"Journal article"},{"id":"pmh:oai:doaj.org/article:033b7aa788164488b57f99ae28a70f97","is_oa":false,"landing_page_url":"https://doaj.org/article/033b7aa788164488b57f99ae28a70f97","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 311 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2901372","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2901372","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/fed5ad30-3358-4f1d-a1a2-2fefb0040869","is_oa":false,"landing_page_url":"https://curis.ku.dk/portal/da/publications/functsnp(fed5ad30-3358-4f1d-a1a2-2fefb0040869).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Goodswen , S J , Gondro , C , Watson-Haigh , N S & Kadarmideen , H 2010 , ' FunctSNP : an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases ' , BMC Bioinformatics , vol. 11 , 311 . https://doi.org/10.1186/1471-2105-11-311","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/5bf4d4d5-db11-4b9a-a46a-620c7daffc93","is_oa":true,"landing_page_url":"https://pure.au.dk/portal/en/publications/5bf4d4d5-db11-4b9a-a46a-620c7daffc93","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Goodswen , S J , Gondro , C , Watson-Haigh , N S &amp; Kadarmideen , H N 2010 , ' FunctSNP : An R package to link SNPs to functional knowledge and dbAutoMaker: A suite of Perl scripts to build SNP databases ' , BMC Bioinformatics , vol. 11 , 311 . https://doi.org/10.1186/1471-2105-11-311","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/fed5ad30-3358-4f1d-a1a2-2fefb0040869","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/fed5ad30-3358-4f1d-a1a2-2fefb0040869","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Goodswen , S J , Gondro , C , Watson-Haigh , N S & Kadarmideen , H 2010 , ' FunctSNP : an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases ' , BMC Bioinformatics , vol. 11 , 311 . https://doi.org/10.1186/1471-2105-11-311","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-311","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-311","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-311","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320386","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07"},{"id":"https://openalex.org/F4320320964","display_name":"University of New England","ror":"https://ror.org/04r659a56"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104699529.pdf","grobid_xml":"https://content.openalex.org/works/W2104699529.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1565471693","https://openalex.org/W1970172595","https://openalex.org/W1996838604","https://openalex.org/W1999722941","https://openalex.org/W2010178357","https://openalex.org/W2036363967","https://openalex.org/W2039353743","https://openalex.org/W2050730569","https://openalex.org/W2070082005","https://openalex.org/W2082536587","https://openalex.org/W2093245824","https://openalex.org/W2112874424","https://openalex.org/W2123340910","https://openalex.org/W2125487751","https://openalex.org/W2129331298","https://openalex.org/W2130410032","https://openalex.org/W2151483550","https://openalex.org/W2153512780","https://openalex.org/W2159980880","https://openalex.org/W2161245845","https://openalex.org/W2164787039","https://openalex.org/W2166898290","https://openalex.org/W2169823080","https://openalex.org/W2170187925"],"related_works":["https://openalex.org/W2183282798","https://openalex.org/W2954446872","https://openalex.org/W2108567377","https://openalex.org/W2113267141","https://openalex.org/W2095011809","https://openalex.org/W1599380839","https://openalex.org/W2163013660","https://openalex.org/W2153873954","https://openalex.org/W2115709641","https://openalex.org/W2103465091"],"abstract_inverted_index":{"BACKGROUND:":[0],"Whole":[1],"genome":[2,276],"association":[3,277],"studies":[4,38],"using":[5,271],"highly":[6],"dense":[7],"single":[8],"nucleotide":[9],"polymorphisms":[10],"(SNPs)":[11],"are":[12,108],"a":[13,25,40,151,195,213,239],"set":[14],"of":[15,29,32,42,51,135,144,215,236,265],"methods":[16],"to":[17,72,74,96,111,124,173,199,222,225,254,293,298],"identify":[18,148],"DNA":[19],"markers":[20],"associated":[21],"with":[22,186,202,238],"variation":[23],"in":[24,62,82,282,311],"particular":[26],"complex":[27,75],"trait":[28],"interest.":[30],"One":[31],"the":[33,47,91,94,126,133,142,170,228,234,243,261,272,286,312],"main":[34],"outcomes":[35,273],"from":[36,190,274],"these":[37],"is":[39,89,99,150,169,267,280,285],"subset":[41],"statistically":[43],"significant":[44],"SNPs.":[45,118],"Finding":[46,260],"potential":[48,262],"biological":[49],"functions":[50,98],"such":[52],"SNPs":[53,201,266,292],"can":[54,219,250,304],"be":[55,220,251,305],"an":[56,163],"important":[57,268],"step":[58],"towards":[59],"further":[60,270],"use":[61,235],"human":[63,136,145,255],"and":[64,245,256],"agricultural":[65],"populations":[66],"(e.g.,":[67,205],"for":[68,153,157,307,315],"identifying":[69],"genes":[70,78],"related":[71],"susceptibility":[73],"diseases":[76],"or":[77,84],"playing":[79],"key":[80],"roles":[81],"development":[83],"performance).":[85],"The":[86,178],"current":[87],"challenge":[88,127],"that":[90,283,290],"information":[92,116],"holding":[93],"clues":[95],"SNP":[97,154,183,230,300],"distributed":[100],"across":[101],"many":[102],"different":[103],"databases.":[104,177,231],"Efficient":[105],"bioinformatics":[106,197],"tools":[107,156,247],"therefore":[109],"needed":[110],"seamlessly":[112],"integrate":[113],"up-to-date":[114],"functional":[115,187,203,263,294],"on":[117],"Many":[119],"web":[120],"services":[121],"have":[122],"arisen":[123],"meet":[125],"but":[128,242],"most":[129],"work":[130],"only":[131,287],"within":[132],"framework":[134],"medical":[137],"research.":[138],"Although":[139],"we":[140,147],"acknowledge":[141],"importance":[143],"research,":[146],"there":[149],"need":[152],"annotation":[155],"other":[158,257],"organisms.":[159,258],"DESCRIPTION:":[160],"We":[161,209,232],"introduce":[162,211],"R":[164,288],"package":[165,289],"called":[166],"FunctSNP,":[167],"which":[168,218,303],"user":[171],"interface":[172],"custom":[174],"built":[175,306],"species-specific":[176],"local":[179,299],"relational":[180],"databases":[181,302],"contain":[182],"data":[184],"together":[185],"annotations":[188],"extracted":[189],"online":[191],"resources.":[192],"FunctSNP":[193,237,279,296],"provides":[194],"unified":[196],"resource":[198],"link":[200],"knowledge":[204],"genes,":[206],"pathways,":[207],"ontologies).":[208],"also":[210,253],"dbAutoMaker,":[212],"suite":[214],"Perl":[216],"scripts,":[217],"scheduled":[221],"run":[223],"periodically":[224],"automatically":[226],"create/update":[227],"customised":[229,301],"illustrate":[233],"livestock":[240],"example,":[241],"approach":[244],"software":[246],"presented":[248],"here":[249],"applied":[252],"CONCLUSIONS:":[259],"significance":[264],"when":[269],"whole":[275],"studies.":[278],"unique":[281],"it":[284],"links":[291],"annotation.":[295],"interfaces":[297],"any":[308],"species":[309],"contained":[310],"National":[313],"Center":[314],"Biotechnology":[316],"Information":[317],"dbSNP":[318],"database.":[319]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
