{"id":"https://openalex.org/W2070859129","doi":"https://doi.org/10.1186/1471-2105-11-31","title":"LucidDraw: Efficiently visualizing complex biochemical networks within MATLAB","display_name":"LucidDraw: Efficiently visualizing complex biochemical networks within MATLAB","publication_year":2010,"publication_date":"2010-01-15","ids":{"openalex":"https://openalex.org/W2070859129","doi":"https://doi.org/10.1186/1471-2105-11-31","mag":"2070859129","pmid":"https://pubmed.ncbi.nlm.nih.gov/20074382"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-31","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-31","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-31","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-31","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100680825","display_name":"Sheng He","orcid":"https://orcid.org/0000-0002-4965-5978"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]},{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng He","raw_affiliation_strings":["The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China","School of Biotechnology, Jiangnan University, Wuxi, China","School of Computer Science, Jiangsu Teachers University of Technology, Changzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"School of Computer Science, Jiangsu Teachers University of Technology, Changzhou, China","institution_ids":["https://openalex.org/I4210144214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101694767","display_name":"Juan Mei","orcid":"https://orcid.org/0009-0008-7695-4747"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Mei","raw_affiliation_strings":["School of Biotechnology, Jiangnan University, Wuxi, 214122, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, 214122, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China","School of Biotechnology, Jiangnan University, Wuxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034246486","display_name":"Guiyang Shi","orcid":"https://orcid.org/0000-0001-5147-0238"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guiyang Shi","raw_affiliation_strings":["School of Biotechnology, Jiangnan University, Wuxi, 214122, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, 214122, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China","School of Biotechnology, Jiangnan University, Wuxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077410212","display_name":"Zhengxiang Wang","orcid":"https://orcid.org/0000-0003-0274-4639"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengxiang Wang","raw_affiliation_strings":["School of Biotechnology, Jiangnan University, Wuxi, 214122, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, 214122, China","School of Biotechnology, Jiangnan University, Wuxi, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103131005","display_name":"Weijiang Li","orcid":"https://orcid.org/0000-0002-4902-6768"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weijiang Li","raw_affiliation_strings":["School of Biotechnology, Jiangnan University, Wuxi, 214122, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, 214122, China","School of Biotechnology, Jiangnan University, Wuxi, China","The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, 214122, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"School of Biotechnology, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]},{"raw_affiliation_string":"The Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103131005"],"corresponding_institution_ids":["https://openalex.org/I111599522"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6805,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.69378679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"11","issue":"1","first_page":"31","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6219000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6219000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.15970000624656677,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.04800000041723251,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8126764297485352},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7937090396881104},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.7596137523651123},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6674771308898926},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.566241979598999},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.5112423896789551},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5083739161491394},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.48295754194259644},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4507772624492645},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4457107186317444},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.4290866255760193},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4175572097301483},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.41181710362434387},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.32953011989593506},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1643657684326172},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13802629709243774},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1113748848438263}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8126764297485352},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7937090396881104},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.7596137523651123},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6674771308898926},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.566241979598999},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.5112423896789551},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5083739161491394},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.48295754194259644},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4507772624492645},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4457107186317444},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.4290866255760193},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4175572097301483},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.41181710362434387},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.32953011989593506},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1643657684326172},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13802629709243774},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1113748848438263},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-31","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-31","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-31","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20074382","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20074382","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:80c2b319c4744080a1b926bee2342317","is_oa":true,"landing_page_url":"https://doaj.org/article/80c2b319c4744080a1b926bee2342317","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 31 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2825225","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2825225","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-31","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-31","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-31","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2070859129.pdf","grobid_xml":"https://content.openalex.org/works/W2070859129.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W188419543","https://openalex.org/W1564824648","https://openalex.org/W1668625893","https://openalex.org/W1946371345","https://openalex.org/W1980558594","https://openalex.org/W1996143319","https://openalex.org/W2035507375","https://openalex.org/W2060872411","https://openalex.org/W2096414648","https://openalex.org/W2103980282","https://openalex.org/W2121905803","https://openalex.org/W2122407999","https://openalex.org/W2132034930","https://openalex.org/W2140040278","https://openalex.org/W2140635350","https://openalex.org/W2144407709","https://openalex.org/W2150947477","https://openalex.org/W2157348185","https://openalex.org/W2158916711","https://openalex.org/W2159675211","https://openalex.org/W2162237022","https://openalex.org/W2162505680","https://openalex.org/W2166394501","https://openalex.org/W2171617577","https://openalex.org/W2441962769","https://openalex.org/W2911920457","https://openalex.org/W3022348237","https://openalex.org/W4256631986"],"related_works":["https://openalex.org/W2111288686","https://openalex.org/W2098027521","https://openalex.org/W2171298469","https://openalex.org/W2901655697","https://openalex.org/W4214598766","https://openalex.org/W2082199132","https://openalex.org/W2727283706","https://openalex.org/W1525985997","https://openalex.org/W2088412871","https://openalex.org/W108107911"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biochemical":[1],"networks":[2,30,60,75,135,229],"play":[3],"an":[4,219],"essential":[5],"role":[6],"in":[7,96,144,230],"systems":[8],"biology.":[9],"Rapidly":[10],"growing":[11],"network":[12,45,89,98,168,221],"data":[13,169],"and":[14,31,80,165,182,199,237],"versatile":[15],"research":[16],"activities":[17],"call":[18],"for":[19,54,73,94,106],"convenient":[20,105,162],"visualization":[21,46,90],"tools":[22,91],"to":[23,110,163,254],"aid":[24],"intuitively":[25],"perceiving":[26],"abstract":[27],"structures":[28],"of":[29,38,44,57,63,112,115,139,155,174,184,225,242,248],"gaining":[32],"insights":[33],"into":[34],"the":[35,64,167,200,243,256],"functional":[36,189],"implications":[37],"networks.":[39],"There":[40],"are":[41,50,92,103,203],"various":[42],"kinds":[43],"software,":[47],"but":[48],"they":[49,102],"usually":[51],"not":[52,104],"adequate":[53],"visual":[55,126],"analysis":[56,127,222],"complex":[58,227],"biological":[59,134,228,250],"mainly":[61],"because":[62],"two":[65],"reasons:":[66],"1)":[67],"most":[68],"existing":[69],"drawing":[70,238],"methods":[71],"suitable":[72],"biochemical":[74],"have":[76],"high":[77],"computation":[78],"loads":[79],"can":[81,141,191],"hardly":[82],"achieve":[83],"near":[84,231],"real-time":[85,232],"visualization;":[86],"2)":[87],"available":[88,186],"designed":[93],"working":[95,157],"certain":[97],"modeling":[99],"platforms,":[100],"so":[101],"general":[107],"analyses":[108],"due":[109],"lack":[111],"broader":[113],"range":[114],"readily":[116],"accessible":[117],"numerical":[118,176],"utilities.":[119],"RESULTS:":[120],"We":[121],"present":[122],"LucidDraw":[123,216],"as":[124,218],"a":[125,145,149,171,209],"tool,":[128],"which":[129],"features":[130],"(a)":[131],"speed:":[132],"typical":[133],"with":[136,196,208,233,259],"several":[137],"hundreds":[138],"nodes":[140],"be":[142,192],"drawn":[143],"few":[146],"seconds":[147],"through":[148],"new":[150,210],"layout":[151,180,212,235],"algorithm;":[152],"(b)":[153],"ease":[154],"use:":[156],"within":[158],"MATLAB":[159],"makes":[160],"it":[161],"manipulate":[164],"analyze":[166],"using":[170],"broad":[172],"spectrum":[173],"sophisticated":[175],"functions;":[177],"(c)":[178],"flexibility:":[179],"styles":[181,236],"incorporation":[183,247],"other":[185],"information":[187],"about":[188],"modules":[190],"controlled":[193],"by":[194],"users":[195],"little":[197],"effort,":[198],"output":[201,257],"drawings":[202],"interactively":[204],"modifiable.":[205],"CONCLUSIONS:":[206],"Equipped":[207],"grid":[211],"algorithm":[213,244],"proposed":[214],"here,":[215],"serves":[217],"auxiliary":[220],"tool":[223],"capable":[224],"visualizing":[226],"controllable":[234],"details.":[239],"The":[240],"framework":[241],"enables":[245],"easy":[246],"extra":[249],"information,":[251],"if":[252],"available,":[253],"influence":[255],"layouts":[258],"predefined":[260],"node":[261],"grouping":[262],"features.":[263]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
