{"id":"https://openalex.org/W2156755609","doi":"https://doi.org/10.1186/1471-2105-11-274","title":"A high-level 3D visualization API for Java and ImageJ","display_name":"A high-level 3D visualization API for Java and ImageJ","publication_year":2010,"publication_date":"2010-05-21","ids":{"openalex":"https://openalex.org/W2156755609","doi":"https://doi.org/10.1186/1471-2105-11-274","mag":"2156755609","pmid":"https://pubmed.ncbi.nlm.nih.gov/20492697"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-274","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-274","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-274","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-274","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003321899","display_name":"Benjamin Schmid","orcid":"https://orcid.org/0000-0002-9327-2296"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Benjamin Schmid","raw_affiliation_strings":["Department of Neurobiology and Genetics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany. b.schmid@biozentrum.uni-wuerzburg.de","Department of Neurobiology and Genetics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology and Genetics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany. b.schmid@biozentrum.uni-wuerzburg.de","institution_ids":["https://openalex.org/I25974101"]},{"raw_affiliation_string":"Department of Neurobiology and Genetics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050085853","display_name":"Johannes Schindelin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Schindelin","raw_affiliation_strings":["Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, Dresden, Germany","institution_ids":["https://openalex.org/I4210159854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042603640","display_name":"Albert Cardona","orcid":"https://orcid.org/0000-0003-4941-6536"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Albert Cardona","raw_affiliation_strings":["Institute of Neuroinformatics, Uni/ETH Z\u00fcrich, Winterthurerstrasse 190, Z\u00fcrich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Neuroinformatics, Uni/ETH Z\u00fcrich, Winterthurerstrasse 190, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024201884","display_name":"Mark Longair","orcid":"https://orcid.org/0000-0002-2192-438X"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Longair","raw_affiliation_strings":["School of Informatics, University of Edinburgh, 10 Crichton Street, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh, 10 Crichton Street, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103183180","display_name":"Martin Heisenberg","orcid":"https://orcid.org/0000-0002-4462-8655"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Heisenberg","raw_affiliation_strings":["Department of Neurobiology and Genetics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurobiology and Genetics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003321899"],"corresponding_institution_ids":["https://openalex.org/I25974101"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":19.7375,"has_fulltext":true,"cited_by_count":573,"citation_normalized_percentile":{"value":0.99487127,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"274","last_page":"274"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7019000053405762,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7019000053405762,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.05559999868273735,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.04039999842643738,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8141278624534607},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7422310709953308},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6341968774795532},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6221004128456116},{"id":"https://openalex.org/keywords/volume-rendering","display_name":"Volume rendering","score":0.5866063237190247},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.5844916701316833},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5212386250495911},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4666898846626282},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43352144956588745},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4139578342437744}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8141278624534607},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7422310709953308},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6341968774795532},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6221004128456116},{"id":"https://openalex.org/C30769735","wikidata":"https://www.wikidata.org/wiki/Q2165951","display_name":"Volume rendering","level":3,"score":0.5866063237190247},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.5844916701316833},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5212386250495911},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4666898846626282},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43352144956588745},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4139578342437744},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":11,"locations":[{"id":"doi:10.1186/1471-2105-11-274","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-274","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-274","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20492697","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20492697","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:47196","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Schmid, B; Schindelin, J; Cardona, A; Longair, M; Heinsenberg, M (2010). A high-level 3D visualization API for Java and ImageJ. BMC Bioinformatics, 11:274.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:9246952a15cf4d3dafac8622de2db50d","is_oa":false,"landing_page_url":"https://doaj.org/article/9246952a15cf4d3dafac8622de2db50d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 274 (2010)","raw_type":"article"},{"id":"pmh:oai:edoc.mpg.de:546678","is_oa":false,"landing_page_url":"http://edoc.mpg.de/546678","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, v.11 (2010)","raw_type":"Article"},{"id":"pmh:oai:opus.bibliothek.uni-wuerzburg.de:5610","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:bvb:20-opus-67851","pdf_url":null,"source":{"id":"https://openalex.org/S4306401635","display_name":"Online Publication Service of W\u00fcrzburg University (W\u00fcrzburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I25974101","host_organization_name":"University of W\u00fcrzburg","host_organization_lineage":["https://openalex.org/I25974101"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896381","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2896381","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_2569204","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0001-0B01-2","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/30030","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/30030","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 11","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000030030","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000030030","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5167/uzh-47196","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-47196","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-274","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-274","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-274","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2156755609.pdf","grobid_xml":"https://content.openalex.org/works/W2156755609.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1482392364","https://openalex.org/W1993161289","https://openalex.org/W1993267444","https://openalex.org/W2074728769","https://openalex.org/W2132629607","https://openalex.org/W2165691333","https://openalex.org/W2165939338","https://openalex.org/W2229412420","https://openalex.org/W2232735501","https://openalex.org/W4237597126"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2749690376","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W1982370580","https://openalex.org/W2739976646","https://openalex.org/W1486114612"],"abstract_inverted_index":{"BACKGROUND:":[0],"Current":[1],"imaging":[2],"methods":[3,31,100],"such":[4],"as":[5],"Magnetic":[6],"Resonance":[7],"Imaging":[8],"(MRI),":[9],"Confocal":[10],"microscopy,":[11],"Electron":[12],"Microscopy":[13,19],"(EM)":[14],"or":[15],"Selective":[16],"Plane":[17],"Illumination":[18],"(SPIM)":[20],"yield":[21],"three-dimensional":[22],"(3D)":[23],"data":[24,49],"sets":[25],"in":[26,111],"need":[27],"of":[28,47,67,86,106],"appropriate":[29],"computational":[30],"for":[32,64],"their":[33],"analysis.":[34],"The":[35,133],"reconstruction,":[36],"segmentation":[37],"and":[38,61,130,179],"registration":[39],"are":[40],"best":[41],"approached":[42],"from":[43],"the":[44,48,95,104,142,151,176],"3D":[45,63,114,167],"representation":[46],"set.":[50],"RESULTS:":[51],"Here":[52],"we":[53,119],"present":[54],"a":[55,77,83,138],"platform-independent":[56],"framework":[57,71,93,157],"based":[58],"on":[59,137,150],"Java":[60,62],"accelerated":[65],"rendering":[66],"biological":[68,88],"images.":[69],"Our":[70,92,156],"is":[72],"seamlessly":[73],"integrated":[74],"into":[75],"ImageJ,":[76],"free":[78],"image":[79,89,108,131,160],"processing":[80],"package":[81],"with":[82,99,166,170,184],"vast":[84],"collection":[85],"community-developed":[87],"analysis":[90,109],"tools.":[91],"enriches":[94],"ImageJ":[96],"software":[97,147,161],"libraries":[98],"that":[101,140],"greatly":[102],"reduce":[103],"complexity":[105],"developing":[107],"tools":[110],"an":[112],"interactive":[113],"visualization":[115,168],"environment.":[116],"In":[117],"particular,":[118],"provide":[120],"high-level":[121],"access":[122],"to":[123,135,163],"volume":[124,126],"rendering,":[125],"editing,":[127],"surface":[128],"extraction,":[129],"annotation.":[132],"ability":[134],"rely":[136],"library":[139],"removes":[141],"low-level":[143],"details":[144],"enables":[145,158],"concentrating":[146],"development":[148,162],"efforts":[149],"algorithm":[152],"implementation":[153],"parts.":[154],"CONCLUSIONS:":[155],"biomedical":[159],"be":[164],"built":[165],"capabilities":[169],"very":[171],"little":[172],"effort.":[173],"We":[174],"offer":[175],"source":[177],"code":[178],"convenient":[180],"binary":[181],"packages":[182],"along":[183],"extensive":[185],"documentation":[186],"at":[187],"http://3dviewer.neurofly.de.":[188]},"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":40},{"year":2024,"cited_by_count":38},{"year":2023,"cited_by_count":34},{"year":2022,"cited_by_count":53},{"year":2021,"cited_by_count":53},{"year":2020,"cited_by_count":51},{"year":2019,"cited_by_count":42},{"year":2018,"cited_by_count":45},{"year":2017,"cited_by_count":38},{"year":2016,"cited_by_count":38},{"year":2015,"cited_by_count":36},{"year":2014,"cited_by_count":29},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":19}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
