{"id":"https://openalex.org/W1972033723","doi":"https://doi.org/10.1186/1471-2105-11-269","title":"Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline","display_name":"Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline","publication_year":2010,"publication_date":"2010-05-20","ids":{"openalex":"https://openalex.org/W1972033723","doi":"https://doi.org/10.1186/1471-2105-11-269","mag":"1972033723","pmid":"https://pubmed.ncbi.nlm.nih.gov/20487544"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-269","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-269","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-269","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-269","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039252702","display_name":"Joachim M De Schrijver","orcid":null},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Joachim M De Schrijver","raw_affiliation_strings":["Laboratory for Bioinformatics and Computational Genomics, Department of Molecular Biotechnology, Ghent University, 9000 Ghent, Belgium. Joachim.DeSchrijver@ugent.be","Laboratory for Bioinformatics and Computational Genomics, Department of Molecular Biotechnology, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Laboratory for Bioinformatics and Computational Genomics, Department of Molecular Biotechnology, Ghent University, 9000 Ghent, Belgium. Joachim.DeSchrijver@ugent.be","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Laboratory for Bioinformatics and Computational Genomics, Department of Molecular Biotechnology, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084885803","display_name":"Kim De Leeneer","orcid":"https://orcid.org/0000-0002-9319-411X"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Kim De Leeneer","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038097341","display_name":"Steve Lefever","orcid":"https://orcid.org/0000-0002-6936-8239"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Steve Lefever","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074977794","display_name":"Nick Sabbe","orcid":null},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"University College Ghent","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Nick Sabbe","raw_affiliation_strings":["Department of Applied Mathematics, Biometrics and Process Control, Ghent University, 9000 Ghent, Belgium,","Department of Applied Mathematics, Biometrics and Process Control , Ghent University , Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, Biometrics and Process Control, Ghent University, 9000 Ghent, Belgium,","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205"]},{"raw_affiliation_string":"Department of Applied Mathematics, Biometrics and Process Control , Ghent University , Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072598822","display_name":"Filip Pattyn","orcid":"https://orcid.org/0000-0003-0858-6651"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Filip Pattyn","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082756197","display_name":"Filip Van Nieuwerburgh","orcid":"https://orcid.org/0000-0001-8815-5485"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210160211","display_name":"Pharmaceutical Biotechnology (Czechia)","ror":"https://ror.org/051tvr365","country_code":"CZ","type":"company","lineage":["https://openalex.org/I4210160211"]}],"countries":["BE","CZ"],"is_corresponding":false,"raw_author_name":"Filip Van Nieuwerburgh","raw_affiliation_strings":["Laboratory for Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, 9000 Ghent, Belgium","on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Laboratory for Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I4210160211"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045578157","display_name":"Paul Coucke","orcid":"https://orcid.org/0000-0001-7119-586X"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Paul Coucke","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium","on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047878026","display_name":"Dieter Deforce","orcid":"https://orcid.org/0000-0002-0635-661X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210160211","display_name":"Pharmaceutical Biotechnology (Czechia)","ror":"https://ror.org/051tvr365","country_code":"CZ","type":"company","lineage":["https://openalex.org/I4210160211"]}],"countries":["BE","CZ"],"is_corresponding":false,"raw_author_name":"Dieter Deforce","raw_affiliation_strings":["Laboratory for Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, 9000 Ghent, Belgium","on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Laboratory for Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I4210160211"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086580140","display_name":"Jo Vandesompele","orcid":"https://orcid.org/0000-0001-6274-0184"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jo Vandesompele","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027630297","display_name":"Sofie Bekaert","orcid":"https://orcid.org/0000-0002-5716-4896"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sofie Bekaert","raw_affiliation_strings":["on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004924184","display_name":"Jan Hellemans","orcid":"https://orcid.org/0000-0003-0825-0031"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jan Hellemans","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium","on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, 9000 Ghent, Belgium,","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024174357","display_name":"Wim Van Criekinge","orcid":"https://orcid.org/0000-0003-2971-5539"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Wim Van Criekinge","raw_affiliation_strings":["on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"on behalf of the NXTGNT collaborators, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5039252702"],"corresponding_institution_ids":["https://openalex.org/I32597200"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.762,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.83451162,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"269","last_page":"269"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7319082021713257},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7167699337005615},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5310462117195129},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5069422721862793},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4974866211414337},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.47973576188087463},{"id":"https://openalex.org/keywords/amplicon","display_name":"Amplicon","score":0.4688003659248352},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44731271266937256},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.42711901664733887},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19726014137268066},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11462581157684326}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7319082021713257},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7167699337005615},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5310462117195129},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5069422721862793},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4974866211414337},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.47973576188087463},{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.4688003659248352},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44731271266937256},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.42711901664733887},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19726014137268066},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11462581157684326},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-269","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-269","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-269","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20487544","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20487544","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:archive.ugent.be:815939","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/815939","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:9fb496c4e9bf4537aa37fffbafed058e","is_oa":true,"landing_page_url":"https://doaj.org/article/9fb496c4e9bf4537aa37fffbafed058e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 269 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2880033","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2880033","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-269","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-269","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-269","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6427064400","display_name":null,"funder_award_id":"Bijzonder Onderzoeksfonds","funder_id":"https://openalex.org/F4320322603","funder_display_name":"Universiteit Gent"}],"funders":[{"id":"https://openalex.org/F4320322603","display_name":"Universiteit Gent","ror":"https://ror.org/00cv9y106"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1972033723.pdf","grobid_xml":"https://content.openalex.org/works/W1972033723.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1968349907","https://openalex.org/W1986473212","https://openalex.org/W2001725958","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2113649367","https://openalex.org/W2124985265","https://openalex.org/W2128114769","https://openalex.org/W2130077037","https://openalex.org/W2136145671","https://openalex.org/W2139760555","https://openalex.org/W2164631357","https://openalex.org/W2169002484","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W190299232","https://openalex.org/W1521481095","https://openalex.org/W594361471","https://openalex.org/W2604964690","https://openalex.org/W2417897055","https://openalex.org/W2613359208","https://openalex.org/W2291334382","https://openalex.org/W1484205720"],"abstract_inverted_index":{"We":[0],"designed":[1],"an":[2],"open-source":[3],"database":[4,21],"oriented":[5],"pipeline":[6,28],"that":[7],"enables":[8],"advanced":[9],"analysis":[10],"of":[11,43],"454/Roche":[12],"GS-FLX":[13],"amplicon":[14],"resequencing":[15],"experiments":[16],"using":[17],"SQL-statements.":[18],"This":[19],"modular":[20],"approach":[22],"allows":[23],"easy":[24],"coupling":[25],"with":[26],"other":[27],"modules":[29],"such":[30],"as":[31],"variant":[32],"interpretation":[33],"or":[34],"a":[35,41],"LIMS":[36],"system.":[37],"There":[38],"is":[39],"also":[40],"set":[42],"standard":[44],"reporting":[45],"scripts":[46],"available.":[47]},"counts_by_year":[{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}