{"id":"https://openalex.org/W2118749704","doi":"https://doi.org/10.1186/1471-2105-11-223","title":"From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT\u00ae standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences","display_name":"From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT\u00ae standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences","publication_year":2010,"publication_date":"2010-04-30","ids":{"openalex":"https://openalex.org/W2118749704","doi":"https://doi.org/10.1186/1471-2105-11-223","mag":"2118749704","pmid":"https://pubmed.ncbi.nlm.nih.gov/20433708"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-223","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016889867","display_name":"Jerome C. Lane","orcid":"https://orcid.org/0000-0003-3586-7563"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210114166","display_name":"Institut de G\u00e9n\u00e9tique Mol\u00e9culaire de Montpellier","ror":"https://ror.org/02785qs39","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210114166"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"J\u00e9r\u00f4me Lane","raw_affiliation_strings":["Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, UPR CNRS 1142, Institut de G\u00e9n\u00e9tique Humaine IGH, 141 rue de la Cardonille, 34396 Montpellier cedex 5, France","IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, Montpellier cedex 5, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, UPR CNRS 1142, Institut de G\u00e9n\u00e9tique Humaine IGH, 141 rue de la Cardonille, 34396 Montpellier cedex 5, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210152518","https://openalex.org/I1294671590","https://openalex.org/I4210163339","https://openalex.org/I4210114166"]},{"raw_affiliation_string":"IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, Montpellier cedex 5, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210152518"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109222846","display_name":"Patrice Duroux","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patrice Duroux","raw_affiliation_strings":["IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, UPR CNRS 1142, Institut de G\u00e9n\u00e9tique Humaine IGH, 141 rue de la Cardonille, 34396, Montpellier cedex 5, France","IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, Montpellier cedex 5, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, UPR CNRS 1142, Institut de G\u00e9n\u00e9tique Humaine IGH, 141 rue de la Cardonille, 34396, Montpellier cedex 5, France","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I19894307","https://openalex.org/I4210163339","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, Montpellier cedex 5, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210152518"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058352965","display_name":"Marie\u2010Paule Lefranc","orcid":"https://orcid.org/0000-0003-0116-9353"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I185839726","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266","country_code":"FR","type":"education","lineage":["https://openalex.org/I185839726"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-Paule Lefranc","raw_affiliation_strings":["IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, UPR CNRS 1142, Institut de G\u00e9n\u00e9tique Humaine IGH, 141 rue de la Cardonille, 34396, Montpellier cedex 5, France","Institut Universitaire de France, 103 Bd St Michel, 75005, Paris, France","Institut Universitaire de France, Paris, France","IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, Montpellier cedex 5, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, UPR CNRS 1142, Institut de G\u00e9n\u00e9tique Humaine IGH, 141 rue de la Cardonille, 34396, Montpellier cedex 5, France","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I19894307","https://openalex.org/I4210163339","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut Universitaire de France, 103 Bd St Michel, 75005, Paris, France","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"Institut Universitaire de France, Paris, France","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"IMGT\u00ae, the international ImMunoGeneTics information system\u00ae, Universit\u00e9 Montpellier 2, Laboratoire d'ImmunoG\u00e9n\u00e9tique Mol\u00e9culaire LIGM, Montpellier cedex 5, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210152518"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016889867"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210114166","https://openalex.org/I4210152518","https://openalex.org/I4210163339"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0656,"has_fulltext":true,"cited_by_count":55,"citation_normalized_percentile":{"value":0.76773083,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"223","last_page":"223"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.6510999798774719,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.6510999798774719,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11171","display_name":"Diabetes and associated disorders","score":0.10119999945163727,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.07680000364780426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7255855798721313},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.69620281457901},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6583921909332275},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5796188712120056},{"id":"https://openalex.org/keywords/immunogenetics","display_name":"Immunogenetics","score":0.5753398537635803},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5577975511550903},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48686733841896057},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4333752989768982}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7255855798721313},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.69620281457901},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6583921909332275},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5796188712120056},{"id":"https://openalex.org/C1547928","wikidata":"https://www.wikidata.org/wiki/Q1660177","display_name":"Immunogenetics","level":3,"score":0.5753398537635803},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5577975511550903},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48686733841896057},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4333752989768982}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005803","descriptor_name":"Genes, Immunoglobulin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007136","descriptor_name":"Immunoglobulins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019672","descriptor_name":"Genes, T-Cell Receptor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019672","descriptor_name":"Genes, T-Cell Receptor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019672","descriptor_name":"Genes, T-Cell Receptor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20433708","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20433708","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-00485592v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00485592","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:9ab43a3d23f045bf83a6af690b193b0d","is_oa":true,"landing_page_url":"https://doaj.org/article/9ab43a3d23f045bf83a6af690b193b0d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 223 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2880031","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2880031","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3408439446","display_name":"IMGT-ONTOLOGY and IMGT-Choreography: foundations of a systemic approach for immunogenetics and immunoinformatics","funder_award_id":"ANR-06-BYOS-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322890","display_name":"Minist\u00e8re de l'Enseignement Sup\u00e9rieur et de la Recherche","ror":"https://ror.org/03sjk9a61"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118749704.pdf","grobid_xml":"https://content.openalex.org/works/W2118749704.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W623638409","https://openalex.org/W1536522695","https://openalex.org/W1948727994","https://openalex.org/W1984387553","https://openalex.org/W1985738984","https://openalex.org/W2004707654","https://openalex.org/W2009570821","https://openalex.org/W2010776654","https://openalex.org/W2035802316","https://openalex.org/W2050902903","https://openalex.org/W2055043387","https://openalex.org/W2068378281","https://openalex.org/W2068616784","https://openalex.org/W2070510621","https://openalex.org/W2097526201","https://openalex.org/W2104146559","https://openalex.org/W2105273832","https://openalex.org/W2107580398","https://openalex.org/W2107781033","https://openalex.org/W2107838665","https://openalex.org/W2108787198","https://openalex.org/W2110155683","https://openalex.org/W2115122333","https://openalex.org/W2123171788","https://openalex.org/W2125748493","https://openalex.org/W2127230663","https://openalex.org/W2145293832","https://openalex.org/W2148495628","https://openalex.org/W2156970071","https://openalex.org/W2162184420","https://openalex.org/W2165270659","https://openalex.org/W2165460636","https://openalex.org/W2166187656","https://openalex.org/W2168909179","https://openalex.org/W2222421952","https://openalex.org/W4210430020","https://openalex.org/W4213060373","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2059565715","https://openalex.org/W2901823680","https://openalex.org/W1999129612","https://openalex.org/W2116418175","https://openalex.org/W2009940763","https://openalex.org/W2126804125","https://openalex.org/W2946410450","https://openalex.org/W4361192415","https://openalex.org/W2137318037","https://openalex.org/W4386637333"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,183],"antigen":[2],"receptors,":[3],"immunoglobulins":[4],"(IG)":[5],"and":[6,46,54,61,66,85,97,109,117,121,147,166,173,176,188,198,207,211,222,245,251,256,264,271,285],"T":[7],"cell":[8],"receptors":[9],"(TR),":[10],"are":[11,24,111],"specific":[12],"molecular":[13,104],"components":[14],"of":[15,20,51,59,81,95,119,194,249,258,274,287],"the":[16,27,52,70,75,78,82,93,115,135,161,195,235],"adaptive":[17],"immune":[18],"response":[19],"vertebrates.":[21],"Their":[22],"genes":[23,68,87,123,200],"organized":[25],"in":[26,29,33,124,159,164,179,226,240,253],"genome":[28],"several":[30],"loci":[31,178],"(7":[32],"humans)":[34],"that":[35,132],"comprise":[36],"different":[37],"gene":[38,99,149,186,205,209],"types:":[39],"variable":[40],"(V),":[41],"diversity":[42],"(D),":[43],"joining":[44],"(J)":[45],"constant":[47],"(C)":[48],"genes.":[49,90],"Synthesis":[50],"IG":[53,96,120,146,175,244,284],"TR":[55,98,122,148,177,246,286],"proteins":[56],"requires":[57],"rearrangements":[58],"V":[60],"J,":[62],"or":[63],"V,":[64,196],"D":[65,197],"J":[67,199],"at":[69,77,296],"DNA":[71,191],"level,":[72],"followed":[73],"by":[74,201,234],"splicing":[76],"RNA":[79],"level":[80],"rearranged":[83],"V-J":[84],"V-D-J":[86],"to":[88,92,102,114,130,218,238,282],"C":[89],"Owing":[91],"particularities":[94],"structures":[100],"related":[101,260,290],"these":[103],"mechanisms,":[105],"conventional":[106],"bioinformatic":[107],"software":[108],"tools":[110],"not":[112],"adapted":[113],"identification":[116,187],"description":[118,193],"large":[125,180],"genomic":[126,181,247],"sequences.":[127,182],"In":[128,267],"order":[129],"answer":[131],"need,":[133],"IMGT,":[134],"international":[136],"ImMunoGeneTics":[137],"information":[138],"system,":[139],"has":[140],"developed":[141],"IMGT/LIGMotif,":[142],"a":[143,241,268],"tool":[144,152],"for":[145],"annotation.":[150],"This":[151],"is":[153,231,294],"based":[154],"on":[155,190],"standardized":[156],"rules":[157],"defined":[158],"IMGT-ONTOLOGY,":[160],"first":[162,242],"ontology":[163],"immunogenetics":[165],"immunoinformatics.":[167],"RESULTS:":[168],"IMGT/LIGMotif":[169,214,230,278,293],"currently":[170,232],"annotates":[171],"human":[172,250],"mouse":[174,252],"annotation":[184],"includes":[185],"orientation":[189],"strand,":[192],"assigning":[202],"IMGT":[203,236],"labels,":[204],"functionality,":[206],"finally,":[208],"delimitation":[210],"cluster":[212],"assembly.":[213],"analyses":[215],"sequences":[216,248],"up":[217],"2.5":[219],"megabase":[220],"pairs":[221],"can":[223],"analyse":[224],"them":[225],"batch":[227],"files.":[228],"CONCLUSIONS:":[229],"used":[233,281],"biocurators":[237],"annotate,":[239],"step,":[243,270],"new":[254],"haplotypes":[255],"those":[257],"closely":[259],"species,":[261],"nonhuman":[262],"primates":[263],"rat,":[265],"respectively.":[266],"next":[269],"following":[272],"enrichment":[273],"its":[275],"reference":[276],"databases,":[277],"will":[279],"be":[280],"annotate":[283],"more":[288],"distantly":[289],"vertebrate":[291],"species.":[292],"available":[295],"http://www.imgt.org/ligmotif/.":[297]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
