{"id":"https://openalex.org/W2136149318","doi":"https://doi.org/10.1186/1471-2105-11-214","title":"Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis","display_name":"Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis","publication_year":2010,"publication_date":"2010-04-29","ids":{"openalex":"https://openalex.org/W2136149318","doi":"https://doi.org/10.1186/1471-2105-11-214","mag":"2136149318","pmid":"https://pubmed.ncbi.nlm.nih.gov/20426876"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-214","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-214","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-214","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-214","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018101706","display_name":"Henning Redestig","orcid":"https://orcid.org/0000-0003-2130-9288"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Henning Redestig","raw_affiliation_strings":["Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan. henning@psc.riken.jp","Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan. henning@psc.riken.jp","institution_ids":["https://openalex.org/I4210100240","https://openalex.org/I4210150921"]},{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan","institution_ids":["https://openalex.org/I4210100240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079973992","display_name":"Miyako Kusano","orcid":"https://orcid.org/0000-0002-0052-6155"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Miyako Kusano","raw_affiliation_strings":["Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]},{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan","institution_ids":["https://openalex.org/I4210100240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009572620","display_name":"Atsushi Fukushima","orcid":"https://orcid.org/0000-0001-9015-1694"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Atsushi Fukushima","raw_affiliation_strings":["Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]},{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan","institution_ids":["https://openalex.org/I4210100240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059542605","display_name":"Fumio Matsuda","orcid":"https://orcid.org/0000-0003-1091-778X"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Fumio Matsuda","raw_affiliation_strings":["Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]},{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan","institution_ids":["https://openalex.org/I4210100240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052696406","display_name":"Kazuki Saito","orcid":"https://orcid.org/0000-0001-6310-5342"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuki Saito","raw_affiliation_strings":["Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]},{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan","institution_ids":["https://openalex.org/I4210100240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064001841","display_name":"Masanori Arita","orcid":"https://orcid.org/0000-0001-6706-0487"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masanori Arita","raw_affiliation_strings":["Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, 1-7-22 Tsurumi-ku, Suehiro-cho, Yokohama, Kanagawa, 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]},{"raw_affiliation_string":"Metabolomics Research Group, RIKEN Plant Science Center, Yokohama, Japan","institution_ids":["https://openalex.org/I4210100240"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5018101706"],"corresponding_institution_ids":["https://openalex.org/I4210100240","https://openalex.org/I4210150921"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.3136,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.88320006,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"214","last_page":"214"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.002300000051036477,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.7294595241546631},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5902969837188721},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5704559087753296},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5646426677703857},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5085488557815552},{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.45131778717041016},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4330797791481018},{"id":"https://openalex.org/keywords/metabolite-profiling","display_name":"Metabolite profiling","score":0.4138597548007965},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3610095977783203},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3248307704925537},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2682504653930664},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10953709483146667},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07649609446525574}],"concepts":[{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.7294595241546631},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5902969837188721},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5704559087753296},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5646426677703857},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5085488557815552},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.45131778717041016},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4330797791481018},{"id":"https://openalex.org/C2994400308","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolite profiling","level":3,"score":0.4138597548007965},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3610095977783203},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3248307704925537},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2682504653930664},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10953709483146667},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07649609446525574},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-11-214","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-214","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-214","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20426876","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20426876","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:68b8ed6e0884454aa12b4148bbfc0fbb","is_oa":true,"landing_page_url":"https://doaj.org/article/68b8ed6e0884454aa12b4148bbfc0fbb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 214 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2879285","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2879285","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-214","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-214","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-214","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2136149318.pdf","grobid_xml":"https://content.openalex.org/works/W2136149318.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1596177457","https://openalex.org/W1681946506","https://openalex.org/W1965468642","https://openalex.org/W1978461542","https://openalex.org/W1980160222","https://openalex.org/W1994447074","https://openalex.org/W2028240481","https://openalex.org/W2033377040","https://openalex.org/W2053254077","https://openalex.org/W2072378785","https://openalex.org/W2096769282","https://openalex.org/W2101551644","https://openalex.org/W2102006623","https://openalex.org/W2113959186","https://openalex.org/W2117667017","https://openalex.org/W2119683067","https://openalex.org/W2120680184","https://openalex.org/W2123060905","https://openalex.org/W2123106337","https://openalex.org/W2133465414","https://openalex.org/W2134394193","https://openalex.org/W2135170450","https://openalex.org/W2153091158","https://openalex.org/W2157243624","https://openalex.org/W2159675211","https://openalex.org/W2160453515","https://openalex.org/W2160629127","https://openalex.org/W2160697532","https://openalex.org/W2163043810","https://openalex.org/W2170297639","https://openalex.org/W2246620632","https://openalex.org/W2582743722","https://openalex.org/W2913995733"],"related_works":["https://openalex.org/W1988419672","https://openalex.org/W599564969","https://openalex.org/W2357723548","https://openalex.org/W2904830650","https://openalex.org/W2008066743","https://openalex.org/W1982494061","https://openalex.org/W4234330887","https://openalex.org/W2566343593","https://openalex.org/W2980667428","https://openalex.org/W3084209502"],"abstract_inverted_index":{"BACKGROUND:":[0],"Analysis":[1],"of":[2,11,54,69,85,94,141,144,216],"data":[3,13,36,90,208,225],"from":[4,120,195,200],"high-throughput":[5],"experiments":[6],"depends":[7],"on":[8,26,131],"the":[9,16,92,172,196,201,241],"availability":[10],"well-structured":[12],"that":[14,127,249],"describe":[15],"assayed":[17],"biomolecules.":[18],"Procedures":[19],"for":[20,43,79,116,223],"obtaining":[21],"and":[22,29,61,112,124,146,165,180,199,231,237],"organizing":[23],"such":[24,170],"meta-data":[25],"genes,":[27],"transcripts":[28],"proteins":[30],"have":[31],"been":[32],"streamlined":[33],"in":[34,71,88,98,190],"many":[35],"analysis":[37],"packages,":[38],"but":[39,73],"are":[40,47],"still":[41],"lacking":[42],"metabolites.":[44],"Chemical":[45],"identifiers":[46,70,84,93,119,143,164,176,218],"notoriously":[48],"incoherent,":[49],"encompassing":[50],"a":[51,75,110,113,132,150,191,220,229],"wide":[52],"range":[53],"different":[55],"referencing":[56],"schemes":[57],"with":[58,91,183],"varying":[59],"scope":[60],"coverage.":[62],"Online":[63],"chemical":[64],"databases":[65,100,126],"use":[66],"multiple":[67],"types":[68],"parallel":[72],"lack":[74],"common":[76,134],"primary":[77,135],"key":[78,221],"reliable":[80],"database":[81,157],"consolidation.":[82],"Connecting":[83],"analytes":[86,145],"found":[87],"experimental":[89],"their":[95],"parent":[96],"metabolites":[97,147],"public":[99,125],"can":[101,158,177,187],"therefore":[102],"be":[103,159,178,188],"very":[104],"laborious.":[105],"RESULTS:":[106],"Here":[107],"we":[108],"present":[109],"strategy":[111],"software":[114],"tool":[115,244],"integrating":[117],"metabolite":[118,217,242],"local":[121,151],"reference":[122],"libraries":[123],"do":[128],"not":[129],"depend":[130],"single":[133],"identifier.":[136],"The":[137,155],"program":[138],"constructs":[139],"groups":[140],"interconnected":[142],"to":[148,161,167,206,234],"obtain":[149,207],"metabolite-centric":[152],"SQLite":[153],"database.":[154,174],"created":[156],"used":[160],"map":[162],"in-house":[163],"synonyms":[166],"external":[168],"resources":[169],"as":[171],"KEGG":[173],"New":[175],"imported":[179],"directly":[181],"integrated":[182],"existing":[184],"data.":[185],"Queries":[186],"performed":[189],"flexible":[192,232],"way,":[193],"both":[194],"command":[197],"line":[198],"statistical":[202],"programming":[203],"environment":[204],"R,":[205],"set":[209],"tailored":[210],"identifier":[211],"mappings.":[212],"CONCLUSIONS:":[213],"Efficient":[214],"cross-referencing":[215],"is":[219],"technology":[222],"metabolomics":[224],"analysis.":[226],"We":[227],"provide":[228],"practical":[230],"solution":[233],"this":[235],"task":[236],"an":[238],"open-source":[239],"program,":[240],"masking":[243],"(MetMask),":[245],"available":[246],"at":[247],"http://metmask.sourceforge.net,":[248],"implements":[250],"our":[251],"ideas.":[252]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}