{"id":"https://openalex.org/W2108165847","doi":"https://doi.org/10.1186/1471-2105-11-171","title":"Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates","display_name":"Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates","publication_year":2010,"publication_date":"2010-04-07","ids":{"openalex":"https://openalex.org/W2108165847","doi":"https://doi.org/10.1186/1471-2105-11-171","mag":"2108165847","pmid":"https://pubmed.ncbi.nlm.nih.gov/20370931"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-171","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035314348","display_name":"Mehar S. Khatkar","orcid":"https://orcid.org/0000-0002-4554-1404"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Mehar S Khatkar","raw_affiliation_strings":["Reprogen-Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden NSW 2570, Australia. mehar.khatkar@sydney.edu.au","Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reprogen-Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden NSW 2570, Australia. mehar.khatkar@sydney.edu.au","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088086316","display_name":"Matthew Hobbs","orcid":"https://orcid.org/0000-0002-6879-1369"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Matthew Hobbs","raw_affiliation_strings":["Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023516016","display_name":"Markus Neuditschko","orcid":"https://orcid.org/0000-0001-7824-701X"},"institutions":[{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Markus Neuditschko","raw_affiliation_strings":["University of Natural Resources and Applied Life Sciences, Vienna, A-1180, Austria","University of Natural Resources and Applied Life Sciences, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Natural Resources and Applied Life Sciences, Vienna, A-1180, Austria","institution_ids":["https://openalex.org/I92869138"]},{"raw_affiliation_string":"University of Natural Resources and Applied Life Sciences, Vienna, Austria","institution_ids":["https://openalex.org/I92869138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082341333","display_name":"Johann S\u00f6lkner","orcid":"https://orcid.org/0000-0002-1517-5829"},"institutions":[{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Johann S\u00f6lkner","raw_affiliation_strings":["University of Natural Resources and Applied Life Sciences, Vienna, A-1180, Austria","University of Natural Resources and Applied Life Sciences, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Natural Resources and Applied Life Sciences, Vienna, A-1180, Austria","institution_ids":["https://openalex.org/I92869138"]},{"raw_affiliation_string":"University of Natural Resources and Applied Life Sciences, Vienna, Austria","institution_ids":["https://openalex.org/I92869138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053230157","display_name":"F. W. Nicholas","orcid":"https://orcid.org/0000-0002-9178-3965"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Frank W Nicholas","raw_affiliation_strings":["Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002523322","display_name":"Herman W. Raadsma","orcid":"https://orcid.org/0000-0002-4753-1824"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Herman W Raadsma","raw_affiliation_strings":["Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia","institution_ids":["https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5035314348"],"corresponding_institution_ids":["https://openalex.org/I129604602"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.3528,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.67400347,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"171","last_page":"171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.6970000267028809,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.6970000267028809,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.12610000371932983,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.09969999641180038,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.7538696527481079},{"id":"https://openalex.org/keywords/linkage-disequilibrium","display_name":"Linkage disequilibrium","score":0.7437013387680054},{"id":"https://openalex.org/keywords/tag-snp","display_name":"Tag SNP","score":0.7413221001625061},{"id":"https://openalex.org/keywords/bovine-genome","display_name":"Bovine genome","score":0.6973356008529663},{"id":"https://openalex.org/keywords/lode","display_name":"Lode","score":0.6446955800056458},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5683783888816833},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5554594993591309},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5099412202835083},{"id":"https://openalex.org/keywords/snp-genotyping","display_name":"SNP genotyping","score":0.5091103911399841},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5069203972816467},{"id":"https://openalex.org/keywords/snp-array","display_name":"SNP array","score":0.4551520347595215},{"id":"https://openalex.org/keywords/locus","display_name":"Locus (genetics)","score":0.4318188726902008},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.37429630756378174},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13861748576164246},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.09983691573143005}],"concepts":[{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.7538696527481079},{"id":"https://openalex.org/C35605836","wikidata":"https://www.wikidata.org/wiki/Q2064311","display_name":"Linkage disequilibrium","level":5,"score":0.7437013387680054},{"id":"https://openalex.org/C55060382","wikidata":"https://www.wikidata.org/wiki/Q7675093","display_name":"Tag SNP","level":5,"score":0.7413221001625061},{"id":"https://openalex.org/C2776473694","wikidata":"https://www.wikidata.org/wiki/Q4950555","display_name":"Bovine genome","level":4,"score":0.6973356008529663},{"id":"https://openalex.org/C58625266","wikidata":"https://www.wikidata.org/wiki/Q1256418","display_name":"Lode","level":2,"score":0.6446955800056458},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5683783888816833},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5554594993591309},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5099412202835083},{"id":"https://openalex.org/C163691529","wikidata":"https://www.wikidata.org/wiki/Q7391886","display_name":"SNP genotyping","level":5,"score":0.5091103911399841},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5069203972816467},{"id":"https://openalex.org/C122060243","wikidata":"https://www.wikidata.org/wiki/Q7391885","display_name":"SNP array","level":5,"score":0.4551520347595215},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.4318188726902008},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.37429630756378174},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13861748576164246},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.09983691573143005},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20370931","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20370931","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2859757","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2859757","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:4c9e15b2b1e74d4499f72e5c935a5508","is_oa":true,"landing_page_url":"https://doaj.org/article/4c9e15b2b1e74d4499f72e5c935a5508","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 171 (2010)","raw_type":"article"},{"id":"pmh:oai:epub.boku.ac.at/:905958","is_oa":false,"landing_page_url":"http://resolver.obvsg.at/urn:nbn:at:at-ubbw:3-182","pdf_url":null,"source":{"id":"https://openalex.org/S4306402306","display_name":"BOK:ePub (Universit\u00e4tsbibliothek der Universit\u00e4t f Bodenkultur Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I92869138","host_organization_name":"BOKU University","host_organization_lineage":["https://openalex.org/I92869138"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108165847.pdf","grobid_xml":"https://content.openalex.org/works/W2108165847.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W54102888","https://openalex.org/W920796370","https://openalex.org/W1544112254","https://openalex.org/W1712008638","https://openalex.org/W1921457844","https://openalex.org/W1965265115","https://openalex.org/W1990517720","https://openalex.org/W2009844552","https://openalex.org/W2023256554","https://openalex.org/W2035702208","https://openalex.org/W2058839892","https://openalex.org/W2061680337","https://openalex.org/W2078057013","https://openalex.org/W2087666448","https://openalex.org/W2089221493","https://openalex.org/W2091498804","https://openalex.org/W2097840595","https://openalex.org/W2098353360","https://openalex.org/W2103395941","https://openalex.org/W2103584230","https://openalex.org/W2103903744","https://openalex.org/W2106630193","https://openalex.org/W2114611642","https://openalex.org/W2115725535","https://openalex.org/W2117424933","https://openalex.org/W2120849673","https://openalex.org/W2122835993","https://openalex.org/W2127853043","https://openalex.org/W2131370766","https://openalex.org/W2136941630","https://openalex.org/W2144911879","https://openalex.org/W2154380613","https://openalex.org/W2156813592","https://openalex.org/W2159574200","https://openalex.org/W2160311988","https://openalex.org/W2160430430","https://openalex.org/W2160717298","https://openalex.org/W2163883712","https://openalex.org/W2168059506","https://openalex.org/W2168148721","https://openalex.org/W4240231372","https://openalex.org/W4240280982","https://openalex.org/W4292239814","https://openalex.org/W4300067104","https://openalex.org/W4319590830","https://openalex.org/W6675759178"],"related_works":["https://openalex.org/W3145196164","https://openalex.org/W2382251069","https://openalex.org/W2412475779","https://openalex.org/W2152068169","https://openalex.org/W2399093398","https://openalex.org/W3005935381","https://openalex.org/W2097097085","https://openalex.org/W3013501632","https://openalex.org/W1976929204","https://openalex.org/W4319734519"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recent":[1],"developments":[2],"of":[3,10,25,28,41,65,69,82,93,116,126,140,161,180,184,193,201,213,233,249,260,269,308,318,351],"high-density":[4],"SNP":[5,45,111,343],"chips":[6,46],"across":[7,108],"a":[8,26,39,53,168,309,314],"number":[9,27,40],"species":[11],"require":[12],"accurate":[13,296],"genetic":[14,32,83],"maps.":[15,84],"Despite":[16],"rapid":[17],"advances":[18],"in":[19,88,189,217,258,263,289,329],"genome":[20,36,247,310,331,352],"sequence":[21,332],"assembly":[22,220],"and":[23,72,152,173,187,207,295,304,312,345],"availability":[24],"tools":[29],"for":[30,38,80,105,199,298,302,316],"creating":[31],"maps,":[33],"the":[34,66,94,114,117,123,190,202,218,224,231,246,264,267,270,280,306],"exact":[35],"location":[37],"SNPs":[42,71,107,129,163,181,203,215,251,300],"from":[43,101,134,338],"these":[44,229],"still":[47],"remains":[48],"unknown.":[49],"We":[50,85],"have":[51],"developed":[52],"locus":[54],"ordering":[55],"procedure":[56,96,118,240,272,287,325],"based":[57],"on":[58,228,253,279],"linkage":[59],"disequilibrium":[60],"(LODE)":[61],"which":[62],"provides":[63,76],"estimation":[64],"chromosomal":[67],"positions":[68,125,232,248],"unaligned":[70],"scaffolds.":[73],"It":[74],"also":[75,242],"an":[77,176,293],"alternative":[78],"means":[79,315],"verification":[81],"exemplified":[86],"LODE":[87,95,225,271,286,324],"cattle.":[89],"RESULTS:":[90],"The":[91,158,196,239,285,323],"utility":[92,115],"was":[97,119,170,204,241,273],"demonstrated":[98],"using":[99,223],"data":[100],"1,943":[102],"bulls":[103],"genotyped":[104],"73,569":[106],"three":[109,138,191],"different":[110],"chips.":[112],"First,":[113],"tested":[120],"by":[121,276],"analysing":[122],"masked":[124,162],"1,500":[127],"randomly-chosen":[128],"with":[130,175],"known":[131],"locations":[132],"(50":[133],"each":[135],"chromosome),":[136],"representing":[137],"classes":[139,192],"minor":[141],"allele":[142],"frequencies":[143],"(MAF),":[144],"namely":[145],">0.05,":[146],"0.01<MAF":[147],"<":[148,154],"or":[149,155],"=":[150,156],"0.05":[151],"0.001<MAF":[153],"0.01.":[157],"efficiency":[159],"(percentage":[160],"that":[164],"could":[165],"be":[166,327],"assigned":[167,182],"location)":[169],"96.7%,":[171],"30.6%":[172],"2.0%;":[174],"accuracy":[177,268],"(the":[178],"percentage":[179],"correctly)":[183],"99.9%,":[185],"98.9%":[186],"33.3%":[188],"MAF,":[194],"respectively.":[195,210],"average":[197],"precision":[198],"placement":[200],"914,":[205],"3,137":[206],"6,853":[208],"kb,":[209],"Secondly,":[211],"4,688":[212],"5,314":[214],"unpositioned":[216],"Btau4.0":[219,254],"were":[221,237],"positioned":[222],"procedure.":[226],"Based":[227],"results,":[230],"485":[234],"unordered":[235,319],"scaffolds":[236,320],"determined.":[238],"used":[243],"to":[244],"validate":[245],"53,068":[250],"placed":[252],"bovine":[255],"assembly,":[256,311],"resulting":[257],"identification":[259],"problem":[261],"areas":[262],"assembly.":[265,283],"Finally,":[266],"independently":[274],"validated":[275],"comparative":[277],"mapping":[278],"hg18":[281],"human":[282],"CONCLUSION:":[284],"described":[288],"this":[290],"study":[291],"is":[292],"efficient":[294],"method":[297],"positioning":[299,317],"(MAF>0.05),":[301],"validating":[303],"checking":[305],"quality":[307],"offers":[313],"containing":[321],"SNPs.":[322],"will":[326],"helpful":[328],"refining":[330],"assemblies,":[333],"especially":[334],"those":[335],"being":[336],"created":[337],"next-generation":[339],"sequencing":[340],"where":[341],"high-throughput":[342],"discovery":[344],"genotyping":[346],"platforms":[347],"are":[348],"integrated":[349],"components":[350],"analysis.":[353]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
