{"id":"https://openalex.org/W2108165847","doi":"https://doi.org/10.1186/1471-2105-11-171","title":"Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates","display_name":"Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates","publication_year":2010,"publication_date":"2010-04-07","ids":{"openalex":"https://openalex.org/W2108165847","doi":"https://doi.org/10.1186/1471-2105-11-171","mag":"2108165847","pmid":"https://pubmed.ncbi.nlm.nih.gov/20370931"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-171","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035314348","display_name":"Mehar S. Khatkar","orcid":"https://orcid.org/0000-0002-4554-1404"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Mehar S Khatkar","raw_affiliation_strings":["Reprogen-Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden NSW 2570, Australia. mehar.khatkar@sydney.edu.au","Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia"],"affiliations":[{"raw_affiliation_string":"Reprogen-Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden NSW 2570, Australia. mehar.khatkar@sydney.edu.au","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088086316","display_name":"Matthew Hobbs","orcid":"https://orcid.org/0000-0002-6879-1369"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Matthew Hobbs","raw_affiliation_strings":["Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia"],"affiliations":[{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023516016","display_name":"Markus Neuditschko","orcid":"https://orcid.org/0000-0001-7824-701X"},"institutions":[{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Markus Neuditschko","raw_affiliation_strings":["University of Natural Resources and Applied Life Sciences, Vienna, A-1180, Austria","University of Natural Resources and Applied Life Sciences, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"University of Natural Resources and Applied Life Sciences, Vienna, A-1180, Austria","institution_ids":["https://openalex.org/I92869138"]},{"raw_affiliation_string":"University of Natural Resources and Applied Life Sciences, Vienna, Austria","institution_ids":["https://openalex.org/I92869138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082341333","display_name":"Johann S\u00f6lkner","orcid":"https://orcid.org/0000-0002-1517-5829"},"institutions":[{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Johann S\u00f6lkner","raw_affiliation_strings":["University of Natural Resources and Applied Life Sciences, Vienna, A-1180, Austria","University of Natural Resources and Applied Life Sciences, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"University of Natural Resources and Applied Life Sciences, Vienna, A-1180, Austria","institution_ids":["https://openalex.org/I92869138"]},{"raw_affiliation_string":"University of Natural Resources and Applied Life Sciences, Vienna, Austria","institution_ids":["https://openalex.org/I92869138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053230157","display_name":"F. W. Nicholas","orcid":"https://orcid.org/0000-0002-9178-3965"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Frank W Nicholas","raw_affiliation_strings":["Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia"],"affiliations":[{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002523322","display_name":"Herman W. Raadsma","orcid":"https://orcid.org/0000-0002-4753-1824"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Herman W Raadsma","raw_affiliation_strings":["Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia"],"affiliations":[{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, NSW, 2570, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Reprogen - Animal Bioscience, Faculty of Veterinary Science, University of Sydney, Camden, Australia","institution_ids":["https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5035314348"],"corresponding_institution_ids":["https://openalex.org/I129604602"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3775,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.69485724,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"171","last_page":"171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.7538696527481079},{"id":"https://openalex.org/keywords/linkage-disequilibrium","display_name":"Linkage disequilibrium","score":0.7437013387680054},{"id":"https://openalex.org/keywords/tag-snp","display_name":"Tag SNP","score":0.7413221001625061},{"id":"https://openalex.org/keywords/bovine-genome","display_name":"Bovine genome","score":0.6973356008529663},{"id":"https://openalex.org/keywords/lode","display_name":"Lode","score":0.6446955800056458},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5683783888816833},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5554594993591309},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5099412202835083},{"id":"https://openalex.org/keywords/snp-genotyping","display_name":"SNP genotyping","score":0.5091103911399841},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5069203972816467},{"id":"https://openalex.org/keywords/snp-array","display_name":"SNP array","score":0.4551520347595215},{"id":"https://openalex.org/keywords/locus","display_name":"Locus (genetics)","score":0.4318188726902008},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.37429630756378174},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13861748576164246},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.09983691573143005}],"concepts":[{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.7538696527481079},{"id":"https://openalex.org/C35605836","wikidata":"https://www.wikidata.org/wiki/Q2064311","display_name":"Linkage disequilibrium","level":5,"score":0.7437013387680054},{"id":"https://openalex.org/C55060382","wikidata":"https://www.wikidata.org/wiki/Q7675093","display_name":"Tag SNP","level":5,"score":0.7413221001625061},{"id":"https://openalex.org/C2776473694","wikidata":"https://www.wikidata.org/wiki/Q4950555","display_name":"Bovine genome","level":4,"score":0.6973356008529663},{"id":"https://openalex.org/C58625266","wikidata":"https://www.wikidata.org/wiki/Q1256418","display_name":"Lode","level":2,"score":0.6446955800056458},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5683783888816833},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5554594993591309},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5099412202835083},{"id":"https://openalex.org/C163691529","wikidata":"https://www.wikidata.org/wiki/Q7391886","display_name":"SNP genotyping","level":5,"score":0.5091103911399841},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5069203972816467},{"id":"https://openalex.org/C122060243","wikidata":"https://www.wikidata.org/wiki/Q7391885","display_name":"SNP array","level":5,"score":0.4551520347595215},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.4318188726902008},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.37429630756378174},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13861748576164246},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.09983691573143005},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20370931","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20370931","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:4c9e15b2b1e74d4499f72e5c935a5508","is_oa":true,"landing_page_url":"https://doaj.org/article/4c9e15b2b1e74d4499f72e5c935a5508","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 171 (2010)","raw_type":"article"},{"id":"pmh:oai:epub.boku.ac.at/:905958","is_oa":false,"landing_page_url":"http://resolver.obvsg.at/urn:nbn:at:at-ubbw:3-182","pdf_url":null,"source":{"id":"https://openalex.org/S4306402306","display_name":"BOK:ePub (Universit\u00e4tsbibliothek der Universit\u00e4t f Bodenkultur Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I92869138","host_organization_name":"BOKU University","host_organization_lineage":["https://openalex.org/I92869138"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2859757","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-11-171","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.47999998927116394,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108165847.pdf","grobid_xml":"https://content.openalex.org/works/W2108165847.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W54102888","https://openalex.org/W920796370","https://openalex.org/W1544112254","https://openalex.org/W1712008638","https://openalex.org/W1921457844","https://openalex.org/W1965265115","https://openalex.org/W1990517720","https://openalex.org/W2009844552","https://openalex.org/W2023256554","https://openalex.org/W2035702208","https://openalex.org/W2058839892","https://openalex.org/W2061680337","https://openalex.org/W2078057013","https://openalex.org/W2087666448","https://openalex.org/W2089221493","https://openalex.org/W2091498804","https://openalex.org/W2097840595","https://openalex.org/W2098353360","https://openalex.org/W2103395941","https://openalex.org/W2103584230","https://openalex.org/W2103903744","https://openalex.org/W2106630193","https://openalex.org/W2114611642","https://openalex.org/W2115725535","https://openalex.org/W2117424933","https://openalex.org/W2120849673","https://openalex.org/W2122835993","https://openalex.org/W2127853043","https://openalex.org/W2131370766","https://openalex.org/W2136941630","https://openalex.org/W2144911879","https://openalex.org/W2154380613","https://openalex.org/W2156813592","https://openalex.org/W2159574200","https://openalex.org/W2160311988","https://openalex.org/W2160430430","https://openalex.org/W2160717298","https://openalex.org/W2163883712","https://openalex.org/W2168059506","https://openalex.org/W2168148721","https://openalex.org/W4240231372","https://openalex.org/W4240280982","https://openalex.org/W4292239814","https://openalex.org/W4300067104","https://openalex.org/W4319590830","https://openalex.org/W6675759178"],"related_works":["https://openalex.org/W3145196164","https://openalex.org/W2382251069","https://openalex.org/W2412475779","https://openalex.org/W2152068169","https://openalex.org/W2399093398","https://openalex.org/W3005935381","https://openalex.org/W2097097085","https://openalex.org/W3013501632","https://openalex.org/W1976929204","https://openalex.org/W4319734519"],"abstract_inverted_index":{"The":[0,38],"LODE":[1,39],"procedure":[2,40],"described":[3],"in":[4,44],"this":[5],"study":[6],"is":[7],"an":[8],"efficient":[9],"and":[10,19,27,60],"accurate":[11],"method":[12],"for":[13,17,31],"positioning":[14,32],"SNPs":[15],"(MAF>0.05),":[16],"validating":[18],"checking":[20],"the":[21],"quality":[22],"of":[23,33,66],"a":[24,29],"genome":[25,46,67],"assembly,":[26],"offers":[28],"means":[30],"unordered":[34],"scaffolds":[35],"containing":[36],"SNPs.":[37],"will":[41],"be":[42],"helpful":[43],"refining":[45],"sequence":[47],"assemblies,":[48],"especially":[49],"those":[50],"being":[51],"created":[52],"from":[53],"next-generation":[54],"sequencing":[55],"where":[56],"high-throughput":[57],"SNP":[58],"discovery":[59],"genotyping":[61],"platforms":[62],"are":[63],"integrated":[64],"components":[65],"analysis.":[68]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-06T13:50:29.536080","created_date":"2025-10-10T00:00:00"}
