{"id":"https://openalex.org/W2026226881","doi":"https://doi.org/10.1186/1471-2105-11-12","title":"SKPDB: a structural database of shikimate pathway enzymes","display_name":"SKPDB: a structural database of shikimate pathway enzymes","publication_year":2010,"publication_date":"2010-01-07","ids":{"openalex":"https://openalex.org/W2026226881","doi":"https://doi.org/10.1186/1471-2105-11-12","mag":"2026226881","pmid":"https://pubmed.ncbi.nlm.nih.gov/20055992"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081469604","display_name":"Helen Andrade Arcuri","orcid":null},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Helen A Arcuri","raw_affiliation_strings":["CEIS/Departamento de Biologia, Instituto de Bioci\u00eancias, UNESP, Rio Claro, S\u00e3o Paulo, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CEIS/Departamento de Biologia, Instituto de Bioci\u00eancias, UNESP, Rio Claro, S\u00e3o Paulo, Brasil","institution_ids":["https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005732609","display_name":"Geraldo Francisco Doneg\u00e1 Zafalon","orcid":"https://orcid.org/0000-0003-2384-011X"},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]},{"id":"https://openalex.org/I1298354342","display_name":"Brazilian Institute of Geography and Statistics","ror":"https://ror.org/0101zye71","country_code":"BR","type":"government","lineage":["https://openalex.org/I1298354342"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Geraldo FD Zafalon","raw_affiliation_strings":["Departamento de Ci\u00eancia da Computa\u00e7\u00e3o e Estat\u00edstica, UNESP/IBILCE, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ci\u00eancia da Computa\u00e7\u00e3o e Estat\u00edstica, UNESP/IBILCE, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brasil","institution_ids":["https://openalex.org/I1298354342","https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041223069","display_name":"Evandro A. Marucci","orcid":null},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]},{"id":"https://openalex.org/I1298354342","display_name":"Brazilian Institute of Geography and Statistics","ror":"https://ror.org/0101zye71","country_code":"BR","type":"government","lineage":["https://openalex.org/I1298354342"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Evandro A Marucci","raw_affiliation_strings":["Departamento de Ci\u00eancia da Computa\u00e7\u00e3o e Estat\u00edstica, UNESP/IBILCE, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ci\u00eancia da Computa\u00e7\u00e3o e Estat\u00edstica, UNESP/IBILCE, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brasil","institution_ids":["https://openalex.org/I1298354342","https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075867992","display_name":"Carlos Eduardo Bonalumi","orcid":null},"institutions":[{"id":"https://openalex.org/I1298354342","display_name":"Brazilian Institute of Geography and Statistics","ror":"https://ror.org/0101zye71","country_code":"BR","type":"government","lineage":["https://openalex.org/I1298354342"]},{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Carlos E Bonalumi","raw_affiliation_strings":["Departamento de Ci\u00eancia da Computa\u00e7\u00e3o e Estat\u00edstica, UNESP/IBILCE, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ci\u00eancia da Computa\u00e7\u00e3o e Estat\u00edstica, UNESP/IBILCE, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brasil","institution_ids":["https://openalex.org/I1298354342","https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004716500","display_name":"Nelson Jos\u00e9 Freitas da Silveira","orcid":"https://orcid.org/0000-0001-9257-7322"},"institutions":[{"id":"https://openalex.org/I4210149677","display_name":"Universitario Francisco de As\u00eds","ror":"https://ror.org/04qtcz169","country_code":"UY","type":"education","lineage":["https://openalex.org/I4210149677"]},{"id":"https://openalex.org/I23925101","display_name":"Universidade Federal de Alfenas","ror":"https://ror.org/034vpja60","country_code":"BR","type":"education","lineage":["https://openalex.org/I23925101"]}],"countries":["BR","UY"],"is_corresponding":false,"raw_author_name":"Nelson JF da Silveira","raw_affiliation_strings":["Departamento de Ci\u00eancias Exatas, UNIFAL, Alfenas, Minas Gerais, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ci\u00eancias Exatas, UNIFAL, Alfenas, Minas Gerais, Brasil","institution_ids":["https://openalex.org/I23925101","https://openalex.org/I4210149677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113848781","display_name":"J.M. Machado","orcid":null},"institutions":[{"id":"https://openalex.org/I1298354342","display_name":"Brazilian Institute of Geography and Statistics","ror":"https://ror.org/0101zye71","country_code":"BR","type":"government","lineage":["https://openalex.org/I1298354342"]},{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 M Machado","raw_affiliation_strings":["Departamento de Ci\u00eancia da Computa\u00e7\u00e3o e Estat\u00edstica, UNESP/IBILCE, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ci\u00eancia da Computa\u00e7\u00e3o e Estat\u00edstica, UNESP/IBILCE, S\u00e3o Jos\u00e9 do Rio Preto, S\u00e3o Paulo, Brasil","institution_ids":["https://openalex.org/I1298354342","https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002143090","display_name":"Walter Filgueira de Azevedo","orcid":"https://orcid.org/0000-0001-8640-357X"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Walter F de Azevedo","raw_affiliation_strings":["Faculdade de Bioci\u00eancias, PUCRS, Porto Alegre, Rio Grande do Sul, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculdade de Bioci\u00eancias, PUCRS, Porto Alegre, Rio Grande do Sul, Brasil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053295842","display_name":"M\u00e1rio S\u00e9rgio Palma","orcid":"https://orcid.org/0000-0002-7363-8211"},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M\u00e1rio S Palma","raw_affiliation_strings":["CEIS/Departamento de Biologia, Instituto de Bioci\u00eancias, UNESP, Rio Claro, S\u00e3o Paulo, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CEIS/Departamento de Biologia, Instituto de Bioci\u00eancias, UNESP, Rio Claro, S\u00e3o Paulo, Brasil","institution_ids":["https://openalex.org/I879563668"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5081469604"],"corresponding_institution_ids":["https://openalex.org/I879563668"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.1775,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.8705197,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.31139999628067017,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.31139999628067017,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.310699999332428,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.05950000137090683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/shikimate-pathway","display_name":"Shikimate pathway","score":0.9596097469329834},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5809230804443359},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.5421456098556519},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.532116711139679},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.44218388199806213},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36714839935302734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3621433675289154},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.29418250918388367},{"id":"https://openalex.org/keywords/aromatic-amino-acids","display_name":"Aromatic amino acids","score":0.1343478560447693}],"concepts":[{"id":"https://openalex.org/C2778255928","wikidata":"https://www.wikidata.org/wiki/Q858525","display_name":"Shikimate pathway","level":4,"score":0.9596097469329834},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5809230804443359},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.5421456098556519},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.532116711139679},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.44218388199806213},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36714839935302734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3621433675289154},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.29418250918388367},{"id":"https://openalex.org/C2777992278","wikidata":"https://www.wikidata.org/wiki/Q705605","display_name":"Aromatic amino acids","level":3,"score":0.1343478560447693}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012765","descriptor_name":"Shikimic Acid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012765","descriptor_name":"Shikimic Acid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012765","descriptor_name":"Shikimic Acid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012765","descriptor_name":"Shikimic Acid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-11-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20055992","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20055992","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:acervodigital.unesp.br:11449/71563","is_oa":true,"landing_page_url":"http://acervodigital.unesp.br/handle/11449/71563","pdf_url":null,"source":{"id":"https://openalex.org/S4306400256","display_name":"Acervo Digital da Universidade Estadual Paulista (Universidade Estadual Paulista)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115194","host_organization_name":"Funda\u00e7\u00e3o para o Desenvolvimento da UNESP","host_organization_lineage":["https://openalex.org/I4210115194"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"outro"},{"id":"pmh:oai:americanae.aecid.es:1724891","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=1724891","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da UNESP","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:12ac7598a90f4fb382c6552f7de25e7c","is_oa":true,"landing_page_url":"https://doaj.org/article/12ac7598a90f4fb382c6552f7de25e7c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 12 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2824673","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2824673","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repositorio.unesp.br:11449/71563","is_oa":true,"landing_page_url":"http://hdl.handle.net/11449/71563","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UNESP","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4300000071525574,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322904","display_name":"Financiadora de Estudos e Projetos","ror":"https://ror.org/030w99567"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2026226881.pdf","grobid_xml":"https://content.openalex.org/works/W2026226881.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W95630632","https://openalex.org/W378341119","https://openalex.org/W656827624","https://openalex.org/W1972436355","https://openalex.org/W1977963158","https://openalex.org/W1980374511","https://openalex.org/W1986191025","https://openalex.org/W2002640757","https://openalex.org/W2002793669","https://openalex.org/W2004272533","https://openalex.org/W2007618885","https://openalex.org/W2011495938","https://openalex.org/W2035193339","https://openalex.org/W2049839234","https://openalex.org/W2065283382","https://openalex.org/W2071486470","https://openalex.org/W2074231493","https://openalex.org/W2093640196","https://openalex.org/W2103159791","https://openalex.org/W2106857639","https://openalex.org/W2114520383","https://openalex.org/W2115848690","https://openalex.org/W2130479394","https://openalex.org/W2132503137","https://openalex.org/W2153582608","https://openalex.org/W2161062388","https://openalex.org/W2167315879","https://openalex.org/W2168770860","https://openalex.org/W2477521491","https://openalex.org/W4211000692","https://openalex.org/W4246356731","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2087644087","https://openalex.org/W2106857639","https://openalex.org/W4288069276","https://openalex.org/W1634723030","https://openalex.org/W4376121863","https://openalex.org/W1943625990","https://openalex.org/W2902769454","https://openalex.org/W2029539405","https://openalex.org/W2051205153","https://openalex.org/W3110571889"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,21,59,80,104,136,147],"functional":[2,121],"and":[3,78,118,120,129,165],"structural":[4,119,154],"characterisation":[5],"of":[6,50,72,89,97,153],"enzymes":[7,28,75,96],"that":[8,32,52],"belong":[9],"to":[10,69,156],"microbial":[11],"metabolic":[12],"pathways":[13],"is":[14,64,83,169],"very":[15],"important":[16],"for":[17,36,48,134],"structure-based":[18],"drug":[19,166],"design.":[20,167],"main":[22],"interest":[23],"in":[24,42,76,159],"studying":[25],"shikimate":[26,73,99],"pathway":[27,74,100],"involves":[29],"the":[30,70,87,98,143],"fact":[31],"they":[33],"are":[34,93,132],"essential":[35],"bacteria":[37],"but":[38],"do":[39,53],"not":[40,54],"occur":[41],"humans,":[43],"making":[44],"them":[45],"selective":[46],"targets":[47],"design":[49],"drugs":[51],"directly":[55],"impact":[56],"humans.":[57],"DESCRIPTION:":[58],"ShiKimate":[60],"Pathway":[61],"DataBase":[62],"(SKPDB)":[63],"a":[65,150],"relational":[66],"database":[67,82,105],"applied":[68],"study":[71],"microorganisms":[77],"plants.":[79],"current":[81],"updated":[84],"regularly":[85],"with":[86],"addition":[88],"new":[90],"data;":[91],"there":[92],"currently":[94],"8902":[95],"from":[101],"different":[102],"sources.":[103],"contains":[106],"extensive":[107],"information":[108],"on":[109],"each":[110],"enzyme,":[111],"including":[112],"detailed":[113],"descriptions":[114],"about":[115],"sequence,":[116,126],"references,":[117],"studies.":[122],"All":[123],"files":[124],"(primary":[125],"atomic":[127],"coordinates":[128],"quality":[130],"scores)":[131],"available":[133],"downloading.":[135],"modeled":[137],"structures":[138],"can":[139],"be":[140,157],"viewed":[141],"using":[142],"Jmol":[144],"program.":[145],"CONCLUSIONS:":[146],"SKPDB":[148],"provides":[149],"large":[151],"number":[152],"models":[155],"used":[158],"docking":[160],"simulations,":[161],"virtual":[162],"screening":[163],"initiatives":[164],"It":[168],"freely":[170],"accessible":[171],"at":[172],"http://lsbzix.rc.unesp.br/skpdb/.":[173]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":8},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
