{"id":"https://openalex.org/W2095937926","doi":"https://doi.org/10.1186/1471-2105-11-103","title":"Word add-in for ontology recognition: semantic enrichment of scientific literature","display_name":"Word add-in for ontology recognition: semantic enrichment of scientific literature","publication_year":2010,"publication_date":"2010-02-24","ids":{"openalex":"https://openalex.org/W2095937926","doi":"https://doi.org/10.1186/1471-2105-11-103","mag":"2095937926","pmid":"https://pubmed.ncbi.nlm.nih.gov/20181245"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-103","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074966371","display_name":"J. Lynn Fink","orcid":"https://orcid.org/0000-0003-2912-6048"},"institutions":[{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J Lynn Fink","raw_affiliation_strings":["Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA 92093-0444, USA. jlfink@ucsd.edu","SKAGGS School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA 92093-0444, USA. jlfink@ucsd.edu","institution_ids":["https://openalex.org/I6750721"]},{"raw_affiliation_string":"SKAGGS School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, USA","institution_ids":["https://openalex.org/I6750721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060813728","display_name":"Pablo Fernicola","orcid":null},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pablo Fernicola","raw_affiliation_strings":["External Research, MS 99/4618, Microsoft Corporation, 1 Microsoft Way, Redmond, WA, 98052, USA","External Research, MS 99/4618, Microsoft Corporation, Redmond, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"External Research, MS 99/4618, Microsoft Corporation, 1 Microsoft Way, Redmond, WA, 98052, USA","institution_ids":["https://openalex.org/I1290206253"]},{"raw_affiliation_string":"External Research, MS 99/4618, Microsoft Corporation, Redmond, USA","institution_ids":["https://openalex.org/I1290206253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026619996","display_name":"Rahul Chandran","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rahul Chandran","raw_affiliation_strings":["Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA, 92093-0444, USA","SKAGGS School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA, 92093-0444, USA","institution_ids":["https://openalex.org/I6750721","https://openalex.org/I36258959"]},{"raw_affiliation_string":"SKAGGS School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, USA","institution_ids":["https://openalex.org/I6750721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077681871","display_name":"Savas Parastatidis","orcid":null},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Savas Parastatidis","raw_affiliation_strings":["External Research, MS 99/4618, Microsoft Corporation, 1 Microsoft Way, Redmond, WA, 98052, USA","External Research, MS 99/4618, Microsoft Corporation, Redmond, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"External Research, MS 99/4618, Microsoft Corporation, 1 Microsoft Way, Redmond, WA, 98052, USA","institution_ids":["https://openalex.org/I1290206253"]},{"raw_affiliation_string":"External Research, MS 99/4618, Microsoft Corporation, Redmond, USA","institution_ids":["https://openalex.org/I1290206253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044364380","display_name":"Alex D. Wade","orcid":"https://orcid.org/0000-0002-9366-1507"},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Wade","raw_affiliation_strings":["External Research, MS 99/4618, Microsoft Corporation, 1 Microsoft Way, Redmond, WA, 98052, USA","External Research, MS 99/4618, Microsoft Corporation, Redmond, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"External Research, MS 99/4618, Microsoft Corporation, 1 Microsoft Way, Redmond, WA, 98052, USA","institution_ids":["https://openalex.org/I1290206253"]},{"raw_affiliation_string":"External Research, MS 99/4618, Microsoft Corporation, Redmond, USA","institution_ids":["https://openalex.org/I1290206253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001392535","display_name":"Oscar Na\u00edm","orcid":null},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oscar Naim","raw_affiliation_strings":["External Research, MS 99/4618, Microsoft Corporation, 1 Microsoft Way, Redmond, WA, 98052, USA","External Research, MS 99/4618, Microsoft Corporation, Redmond, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"External Research, MS 99/4618, Microsoft Corporation, 1 Microsoft Way, Redmond, WA, 98052, USA","institution_ids":["https://openalex.org/I1290206253"]},{"raw_affiliation_string":"External Research, MS 99/4618, Microsoft Corporation, Redmond, USA","institution_ids":["https://openalex.org/I1290206253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043470769","display_name":"Gregory B. Quinn","orcid":null},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gregory B Quinn","raw_affiliation_strings":["San Diego Supercomputer Center, 10100 Hopkins Dr, San Diego, CA, 92093-0743, USA","San Diego Supercomputer Center San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, 10100 Hopkins Dr, San Diego, CA, 92093-0743, USA","institution_ids":["https://openalex.org/I181653535"]},{"raw_affiliation_string":"San Diego Supercomputer Center San Diego, USA","institution_ids":["https://openalex.org/I181653535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075833022","display_name":"Philip E. Bourne","orcid":"https://orcid.org/0000-0002-7618-7292"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip E Bourne","raw_affiliation_strings":["Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA, 92093-0444, USA","SKAGGS School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA, 92093-0444, USA","institution_ids":["https://openalex.org/I6750721","https://openalex.org/I36258959"]},{"raw_affiliation_string":"SKAGGS School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, USA","institution_ids":["https://openalex.org/I6750721"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5074966371"],"corresponding_institution_ids":["https://openalex.org/I6750721"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0893,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.76472869,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11","issue":"1","first_page":"103","last_page":"103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9514999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9514999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.003700000001117587,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8420795202255249},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6085159182548523},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6068043112754822},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5689114928245544},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5584617257118225},{"id":"https://openalex.org/keywords/cyberinfrastructure","display_name":"Cyberinfrastructure","score":0.4783444106578827},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.47310662269592285},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38003766536712646},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33976107835769653},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32174256443977356},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.12515807151794434}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8420795202255249},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6085159182548523},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6068043112754822},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5689114928245544},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5584617257118225},{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.4783444106578827},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.47310662269592285},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38003766536712646},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33976107835769653},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32174256443977356},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.12515807151794434},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20181245","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20181245","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8808439b4a944cd29005c39fbae0aa10","is_oa":false,"landing_page_url":"https://doaj.org/article/8808439b4a944cd29005c39fbae0aa10","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 103 (2010)","raw_type":"article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:250165","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2837026","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2837026","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307764","display_name":"Microsoft","ror":"https://ror.org/00d0nc645"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095937926.pdf","grobid_xml":"https://content.openalex.org/works/W2095937926.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W24553703","https://openalex.org/W1493831684","https://openalex.org/W1496826797","https://openalex.org/W1531154150","https://openalex.org/W1605322348","https://openalex.org/W1965873784","https://openalex.org/W1973646872","https://openalex.org/W1977968320","https://openalex.org/W1991747826","https://openalex.org/W1994843778","https://openalex.org/W2009974606","https://openalex.org/W2016017240","https://openalex.org/W2031445920","https://openalex.org/W2036242330","https://openalex.org/W2048503857","https://openalex.org/W2053673723","https://openalex.org/W2056594166","https://openalex.org/W2057240659","https://openalex.org/W2063978490","https://openalex.org/W2067522876","https://openalex.org/W2071475771","https://openalex.org/W2079691202","https://openalex.org/W2091729411","https://openalex.org/W2095954679","https://openalex.org/W2096525273","https://openalex.org/W2101727078","https://openalex.org/W2103017472","https://openalex.org/W2107141268","https://openalex.org/W2108564887","https://openalex.org/W2114420708","https://openalex.org/W2116040937","https://openalex.org/W2120609672","https://openalex.org/W2122174694","https://openalex.org/W2123179625","https://openalex.org/W2126276057","https://openalex.org/W2127603354","https://openalex.org/W2130930065","https://openalex.org/W2132784310","https://openalex.org/W2137999759","https://openalex.org/W2144001613","https://openalex.org/W2152785430","https://openalex.org/W2156952734","https://openalex.org/W2157965447","https://openalex.org/W2165428180","https://openalex.org/W2168866167","https://openalex.org/W2169918010","https://openalex.org/W2170981556","https://openalex.org/W2174255877","https://openalex.org/W2186816797","https://openalex.org/W2230062173","https://openalex.org/W2401159993","https://openalex.org/W4230903726","https://openalex.org/W4239678514","https://openalex.org/W4240861547","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W273500195","https://openalex.org/W2043019925","https://openalex.org/W4236056781","https://openalex.org/W4293768956","https://openalex.org/W2773781927","https://openalex.org/W2184477657","https://openalex.org/W90628286","https://openalex.org/W1696735061","https://openalex.org/W2152811545","https://openalex.org/W1999096178"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"the":[2,16,52,102,169],"current":[3],"era":[4],"of":[5,10,18,54,173],"scientific":[6,21],"research,":[7],"efficient":[8],"communication":[9,22],"information":[11,35],"is":[12,23,26,51,139],"paramount.":[13],"As":[14],"such,":[15],"nature":[17],"scholarly":[19,59],"and":[20,30,36,42,76,96,108,142,171],"changing;":[24],"cyberinfrastructure":[25],"now":[27],"absolutely":[28],"necessary":[29],"new":[31],"media":[32],"are":[33,82,111,151],"allowing":[34,85],"knowledge":[37,48],"to":[38,46,58,87,97,130,134,161],"be":[39],"more":[40,49],"interactive":[41],"immediate.":[43],"One":[44],"approach":[45],"making":[47],"accessible":[50],"addition":[53],"machine-readable":[55,174],"semantic":[56,89,132],"data":[57,90,100,133,146],"articles.":[60],"RESULTS:":[61],"The":[62,106,117],"Word":[63,118],"add-in":[64,107,119],"presented":[65],"here":[66],"will":[67,166],"assist":[68],"authors":[69,86,160],"in":[70,101,155],"this":[71],"effort":[72],"by":[73],"automatically":[74],"recognizing":[75],"highlighting":[77],"words":[78,93],"or":[79,94],"phrases":[80],"that":[81,99,150],"likely":[83],"information-rich,":[84],"associate":[88],"with":[91],"those":[92],"phrases,":[95],"embed":[98],"document":[103,136],"as":[104,137],"XML.":[105],"source":[109],"code":[110],"publicly":[112],"available":[113],"at":[114],"http://www.codeplex.com/UCSDBioLit.":[115],"CONCLUSIONS:":[116],"for":[120,127],"ontology":[121],"term":[122],"recognition":[123],"makes":[124],"it":[125,138,143],"possible":[126],"an":[128],"author":[129],"add":[131],"a":[135,153],"being":[140],"written":[141],"encodes":[144],"these":[145],"using":[147],"XML":[148],"tags":[149],"effectively":[152],"standard":[154],"life":[156],"sciences":[157],"literature.":[158],"Allowing":[159],"mark-up":[162],"their":[163],"own":[164],"work":[165],"help":[167],"increase":[168],"amount":[170],"quality":[172],"literature":[175],"metadata.":[176]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}