{"id":"https://openalex.org/W2106560678","doi":"https://doi.org/10.1186/1471-2105-11-101","title":"Extracting causal relations on HIV drug resistance from literature","display_name":"Extracting causal relations on HIV drug resistance from literature","publication_year":2010,"publication_date":"2010-02-23","ids":{"openalex":"https://openalex.org/W2106560678","doi":"https://doi.org/10.1186/1471-2105-11-101","mag":"2106560678","pmid":"https://pubmed.ncbi.nlm.nih.gov/20178611"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-101","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-101","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-101","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-101","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059728213","display_name":"Quoc-Chinh Bui","orcid":null},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Quoc-Chinh Bui","raw_affiliation_strings":["Computational Science, University of Amsterdam, Science Park 107, 1098 XG Amsterdam, The Netherlands. bqchinh@gmail.com","Computational Science, University of Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Science, University of Amsterdam, Science Park 107, 1098 XG Amsterdam, The Netherlands. bqchinh@gmail.com","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Computational Science, University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113670236","display_name":"Breannd\u00e1n \u00d3 Nuall\u00e1in","orcid":null},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Breannd\u00e1n \u00d3 Nuall\u00e1in","raw_affiliation_strings":["Computational Science, University of Amsterdam, Science Park 107, 1098, XG, Amsterdam, The Netherlands","Computational Science, University of Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Science, University of Amsterdam, Science Park 107, 1098, XG, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Computational Science, University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103011545","display_name":"Charles A. Boucher","orcid":"https://orcid.org/0000-0003-0892-5473"},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Charles A Boucher","raw_affiliation_strings":["Department of Virology, Erasmus University Rotterdam, Dr Molewaterplein 50, 3015, GE, Rotterdam, The Netherlands","Department of Virology, ERASMUS University Rotterdam, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Virology, Erasmus University Rotterdam, Dr Molewaterplein 50, 3015, GE, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I913958620"]},{"raw_affiliation_string":"Department of Virology, ERASMUS University Rotterdam, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I913958620"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016657852","display_name":"P.M.A. Sloot","orcid":"https://orcid.org/0000-0002-3848-5395"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter MA Sloot","raw_affiliation_strings":["Computational Science, University of Amsterdam, Science Park 107, 1098, XG, Amsterdam, The Netherlands","Computational Science, University of Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Science, University of Amsterdam, Science Park 107, 1098, XG, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Computational Science, University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059728213"],"corresponding_institution_ids":["https://openalex.org/I887064364"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.3614,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.80121525,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"101","last_page":"101"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.25369998812675476,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.25369998812675476,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.1876000016927719,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.09929999709129333,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.7523592114448547},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.648711085319519},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6002252101898193},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5430310964584351},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.4809971749782562},{"id":"https://openalex.org/keywords/drug-resistance","display_name":"Drug resistance","score":0.47997546195983887},{"id":"https://openalex.org/keywords/hiv-drug-resistance","display_name":"HIV drug resistance","score":0.46914806962013245},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4593930244445801},{"id":"https://openalex.org/keywords/resistance","display_name":"Resistance (ecology)","score":0.459194540977478},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4147682785987854},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3655737042427063},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36092275381088257},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3495461940765381},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32760360836982727},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23985028266906738},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.22671055793762207},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20083186030387878},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.13813626766204834},{"id":"https://openalex.org/keywords/viral-load","display_name":"Viral load","score":0.13222822546958923},{"id":"https://openalex.org/keywords/antiretroviral-therapy","display_name":"Antiretroviral therapy","score":0.10017231106758118}],"concepts":[{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.7523592114448547},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.648711085319519},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6002252101898193},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5430310964584351},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.4809971749782562},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.47997546195983887},{"id":"https://openalex.org/C2778451633","wikidata":"https://www.wikidata.org/wiki/Q5629934","display_name":"HIV drug resistance","level":5,"score":0.46914806962013245},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4593930244445801},{"id":"https://openalex.org/C57473165","wikidata":"https://www.wikidata.org/wiki/Q7315604","display_name":"Resistance (ecology)","level":2,"score":0.459194540977478},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4147682785987854},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3655737042427063},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36092275381088257},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3495461940765381},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32760360836982727},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23985028266906738},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.22671055793762207},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20083186030387878},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.13813626766204834},{"id":"https://openalex.org/C142462285","wikidata":"https://www.wikidata.org/wiki/Q2528140","display_name":"Viral load","level":3,"score":0.13222822546958923},{"id":"https://openalex.org/C2993143319","wikidata":"https://www.wikidata.org/wiki/Q583050","display_name":"Antiretroviral therapy","level":4,"score":0.10017231106758118},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":12,"locations":[{"id":"doi:10.1186/1471-2105-11-101","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-101","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-101","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20178611","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20178611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/5b3513f2-2504-4d28-a8fa-d8a1d9472ccf","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/extracting-causal-relations-on-hiv-drug-resistance-from-literature(5b3513f2-2504-4d28-a8fa-d8a1d9472ccf).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bui, Q C, \u00d3 Nuall\u00e1in, B, Boucher, C A & Sloot, P M A 2010, 'Extracting causal relations on HIV drug resistance from literature', BMC Bioinformatics, vol. 11, pp. 101. https://doi.org/10.1186/1471-2105-11-101","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.eur.nl:openaire/22e0f52f-891e-4743-b2a2-5651c7e6fd67","is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/22e0f52f-891e-4743-b2a2-5651c7e6fd67","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bui, QC, Nuallain, BO, Boucher, C & Sloot, PMA 2010, 'Extracting causal relations on HIV drug resistance from literature', BMC Bioinformatics, vol. 11. https://doi.org/10.1186/1471-2105-11-101","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:eur:oai:repub.eur.nl:28469","is_oa":true,"landing_page_url":"http://hdl.handle.net/1765/28469","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"B M C Bioinformatics, 11","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:openaire/5b3513f2-2504-4d28-a8fa-d8a1d9472ccf","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/extracting-causal-relations-on-hiv-drug-resistance-from-literature(5b3513f2-2504-4d28-a8fa-d8a1d9472ccf).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bui, Q C, \u00d3 Nuall\u00e1in, B, Boucher, C A & Sloot, P M A 2010, 'Extracting causal relations on HIV drug resistance from literature', BMC Bioinformatics, vol. 11, pp. 101. https://doi.org/10.1186/1471-2105-11-101","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dare.uva.nl:publications/5b3513f2-2504-4d28-a8fa-d8a1d9472ccf","is_oa":false,"landing_page_url":"http://dare.uva.nl/personal/pure/en/publications/extracting-causal-relations-on-hiv-drug-resistance-from-literature(5b3513f2-2504-4d28-a8fa-d8a1d9472ccf).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:doaj.org/article:eb384805ae1c491a963ec94c673aa100","is_oa":true,"landing_page_url":"https://doaj.org/article/eb384805ae1c491a963ec94c673aa100","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 101 (2010)","raw_type":"article"},{"id":"pmh:oai:dr.ntu.edu.sg:10356/96395","is_oa":true,"landing_page_url":"https://hdl.handle.net/10356/96395","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2841207","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2841207","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.eur.nl:publications/22e0f52f-891e-4743-b2a2-5651c7e6fd67","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:repub.eur.nl:28469","is_oa":false,"landing_page_url":"https://repub.eur.nl/pub/28469","pdf_url":null,"source":{"id":"https://openalex.org/S4306400997","display_name":"RePub (Erasmus University, Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"B M C Bioinformatics vol. 11","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-101","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-101","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-101","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8299999833106995}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106560678.pdf","grobid_xml":"https://content.openalex.org/works/W2106560678.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1570448133","https://openalex.org/W1580184797","https://openalex.org/W1604685658","https://openalex.org/W1994306321","https://openalex.org/W2006566482","https://openalex.org/W2009467617","https://openalex.org/W2052547205","https://openalex.org/W2071475771","https://openalex.org/W2072416250","https://openalex.org/W2074027358","https://openalex.org/W2078017455","https://openalex.org/W2082683263","https://openalex.org/W2097606805","https://openalex.org/W2097960255","https://openalex.org/W2099369363","https://openalex.org/W2103397879","https://openalex.org/W2115936127","https://openalex.org/W2117211286","https://openalex.org/W2123112337","https://openalex.org/W2128165179","https://openalex.org/W2130395838","https://openalex.org/W2132288458","https://openalex.org/W2140179827","https://openalex.org/W2140407633","https://openalex.org/W2141605886","https://openalex.org/W2143353625","https://openalex.org/W2143898770","https://openalex.org/W2156930958","https://openalex.org/W2160238006","https://openalex.org/W2162629891","https://openalex.org/W2164173383","https://openalex.org/W2167289895","https://openalex.org/W2168400705","https://openalex.org/W2168905447"],"related_works":["https://openalex.org/W3011567179","https://openalex.org/W2964979954","https://openalex.org/W2378384631","https://openalex.org/W4295488769","https://openalex.org/W3203493386","https://openalex.org/W2372700301","https://openalex.org/W2289782372","https://openalex.org/W2355300513","https://openalex.org/W2032847961","https://openalex.org/W2109046728"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,77],"HIV":[2,16,91,232],"treatment":[3],"it":[4],"is":[5,51,64,101,187],"critical":[6],"to":[7,41,66,85,118,125,154,197,210,252],"have":[8],"up-to-date":[9],"resistance":[10,156,203,234],"data":[11,25,204],"of":[12,22,116,129,141,165,256],"applicable":[13],"drugs":[14,70,92],"since":[15],"has":[17,226],"a":[18,56,82,114,126,227],"very":[19],"high":[20],"rate":[21],"mutation.":[23],"These":[24],"are":[26],"made":[27],"available":[28],"through":[29],"scientific":[30],"publications":[31],"and":[32,46,63,71,87,93,112,132,207,212,223,262],"must":[33],"be":[34,42,238,250],"extracted":[35,135,149],"manually":[36],"by":[37,44],"experts":[38],"in":[39,95,189,240],"order":[40],"used":[43,188,239],"virologists":[45,211],"medical":[47,213],"doctors.":[48],"Therefore":[49],"there":[50],"an":[52,138],"urgent":[53],"need":[54],"for":[55,143,158,178,215],"tool":[57],"that":[58],"partially":[59],"automates":[60],"this":[61,78,166],"process":[62],"able":[65],"retrieve":[67],"relations":[68,111,136,150,257],"between":[69,90],"virus":[72],"mutations":[73,94],"from":[74,192,205],"literature.":[75],"RESULTS:":[76],"work":[79],"we":[80],"present":[81,208],"novel":[83,202],"method":[84,100,124,225],"extract":[86,253],"combine":[88],"relationships":[89],"viral":[96],"genomes.":[97],"Our":[98],"extraction":[99,222,243],"based":[102],"on":[103,230],"natural":[104],"language":[105],"processing":[106],"(NLP)":[107],"which":[108],"produces":[109],"grammatical":[110],"applies":[113],"set":[115,128],"rules":[117],"these":[119],"relations.":[120],"We":[121,145],"applied":[122,251],"our":[123],"relevant":[127,201],"PubMed":[130],"abstracts":[131],"obtained":[133],"2,434":[134],"with":[137,174],"estimated":[139],"performance":[140,229],"84%":[142],"F-score.":[144],"then":[146],"combined":[147],"the":[148,175,179,193,199],"using":[151],"logistic":[152],"regression":[153],"generate":[155],"values":[157],"each":[159],"<drug,":[160],"mutation>":[161],"pair.":[162],"The":[163,185,219,245],"results":[164],"relation":[167,221,242],"combination":[168,224],"show":[169],"more":[170],"than":[171],"85%":[172],"agreement":[173],"Stanford":[176],"HIVDB":[177],"ten":[180],"most":[181,200],"frequently":[182],"occurring":[183],"mutations.":[184],"system":[186],"5":[190],"hospitals":[191],"Virolab":[194],"project":[195],"http://www.virolab.org":[196],"preselect":[198],"literature":[206],"those":[209],"doctors":[214],"further":[216],"evaluation.":[217],"CONCLUSIONS:":[218],"proposed":[220],"good":[228],"extracting":[231],"drug":[233],"data.":[235],"It":[236],"can":[237,248],"large-scale":[241],"experiments.":[244],"developed":[246],"methods":[247],"also":[249],"other":[254],"type":[255],"such":[258],"as":[259],"gene-protein,":[260],"gene-disease,":[261],"disease-mutation.":[263]},"counts_by_year":[{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
