{"id":"https://openalex.org/W1986601486","doi":"https://doi.org/10.1186/1471-2105-10-s9-s9","title":"Towards large-scale sample annotation in gene expression repositories","display_name":"Towards large-scale sample annotation in gene expression repositories","publication_year":2009,"publication_date":"2009-09-01","ids":{"openalex":"https://openalex.org/W1986601486","doi":"https://doi.org/10.1186/1471-2105-10-s9-s9","mag":"1986601486","pmid":"https://pubmed.ncbi.nlm.nih.gov/19761579"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s9-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s9-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S9-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S9-S9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019027996","display_name":"Erik Pitzer","orcid":"https://orcid.org/0000-0002-3056-7716"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210136249","display_name":"University of Applied Sciences Upper Austria","ror":"https://ror.org/03jqp6d56","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210136249"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["AT","US"],"is_corresponding":true,"raw_author_name":"Erik Pitzer","raw_affiliation_strings":["Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA. erik.pitzer@fh-hagenberg.at","Upper Austria University of Applied Sciences, Hagenberg, Austria","Decision Systems Group, Brigham and Women's Hospital, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA. erik.pitzer@fh-hagenberg.at","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Upper Austria University of Applied Sciences, Hagenberg, Austria","institution_ids":["https://openalex.org/I4210136249"]},{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054080485","display_name":"Ronilda Lacson","orcid":"https://orcid.org/0000-0003-3300-1176"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ronilda Lacson","raw_affiliation_strings":["Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","Decision Systems Group, Brigham and Women's Hospital, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]},{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008928704","display_name":"Ludwig Christian Hinske","orcid":"https://orcid.org/0000-0001-7273-5899"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian Hinske","raw_affiliation_strings":["Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","Decision Systems Group, Brigham and Women's Hospital, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]},{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100377811","display_name":"Ji-Hoon Kim","orcid":"https://orcid.org/0000-0002-9809-1339"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jihoon Kim","raw_affiliation_strings":["Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","Decision Systems Group, Brigham and Women's Hospital, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]},{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067274615","display_name":"Pedro A. F. Galante","orcid":"https://orcid.org/0000-0002-4820-4155"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210130541","display_name":"Instituto Paulo Gontijo","ror":"https://ror.org/03h8wyx14","country_code":"BR","type":"nonprofit","lineage":["https://openalex.org/I4210130541"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Pedro AF Galante","raw_affiliation_strings":["Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, S\u00e3o Paulo, Brazil","Decision Systems Group, Brigham and Women's Hospital, Boston, USA","Ludwig Institute for Cancer Research, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]},{"raw_affiliation_string":"Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I4210130541"]},{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]},{"raw_affiliation_string":"Ludwig Institute for Cancer Research, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I4210130541"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084415954","display_name":"Lucila Ohno\u2010Machado","orcid":"https://orcid.org/0000-0002-8005-7327"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lucila Ohno-Machado","raw_affiliation_strings":["Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","Decision Systems Group, Brigham and Women's Hospital, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]},{"raw_affiliation_string":"Decision Systems Group, Brigham and Women's Hospital, Boston, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210143601"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019027996","https://openalex.org/A5054080485"],"corresponding_institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I4210136249","https://openalex.org/I4210143601"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4054,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.62311799,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"S9","first_page":"S9","last_page":"S9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7940999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7940999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.133200004696846,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.01889999955892563,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8849639892578125},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7094502449035645},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.5862283706665039},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5400828123092651},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5280961394309998},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.49925684928894043},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4966803193092346},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4652465581893921},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.43091148138046265},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34144073724746704},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21593645215034485}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8849639892578125},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7094502449035645},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.5862283706665039},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5400828123092651},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5280961394309998},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.49925684928894043},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4966803193092346},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4652465581893921},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.43091148138046265},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34144073724746704},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21593645215034485},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-s9-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s9-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S9-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19761579","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19761579","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2745696","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2745696","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:uni-augsburg.opus-bayern.de:95767","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:bvb:384-opus4-957673","pdf_url":null,"source":{"id":"https://openalex.org/S4306400930","display_name":"OPUS (Augsburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I119916105","host_organization_name":"Augsburg University","host_organization_lineage":["https://openalex.org/I119916105"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s9-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s9-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S9-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G8270194255","display_name":null,"funder_award_id":"D43TW007015","funder_id":"https://openalex.org/F4320337356","funder_display_name":"Fogarty International Center"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337356","display_name":"Fogarty International Center","ror":"https://ror.org/02xey9a22"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1986601486.pdf","grobid_xml":"https://content.openalex.org/works/W1986601486.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1523843467","https://openalex.org/W1544923801","https://openalex.org/W1868489439","https://openalex.org/W2024991678","https://openalex.org/W2054800386","https://openalex.org/W2072545669","https://openalex.org/W2082668371","https://openalex.org/W2083737836","https://openalex.org/W2090566980","https://openalex.org/W2095907724","https://openalex.org/W2098077604","https://openalex.org/W2100471807","https://openalex.org/W2102392482","https://openalex.org/W2117722273","https://openalex.org/W2120865735","https://openalex.org/W2129984117","https://openalex.org/W2134725489","https://openalex.org/W2144303444","https://openalex.org/W2145543651","https://openalex.org/W2154362705","https://openalex.org/W2156418292","https://openalex.org/W2167980479","https://openalex.org/W2170989872"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1989811317","https://openalex.org/W3202867831","https://openalex.org/W1597990569"],"abstract_inverted_index":{"BACKGROUND:":[0],"Large":[1],"repositories":[2],"of":[3,36,74,88,96,107],"biomedical":[4],"research":[5],"data":[6,15,55,97],"are":[7,51],"most":[8],"useful":[9],"to":[10,60],"translational":[11],"researchers":[12],"if":[13],"their":[14],"can":[16],"be":[17,129],"aggregated":[18],"for":[19,85,120],"efficient":[20,72],"queries":[21],"and":[22,43,49,80,101,124],"analyses.":[23],"However,":[24],"inconsistent":[25],"or":[26,38],"non-existent":[27],"annotations":[28],"describing":[29],"important":[30],"sample":[31],"details":[32],"such":[33],"as":[34],"name":[35],"tissue":[37],"cell":[39],"line,":[40],"histopathological":[41],"type,":[42],"subject":[44],"characteristics":[45],"like":[46],"demographics,":[47],"treatment,":[48],"survival":[50],"seldom":[52],"present":[53],"in":[54],"repositories,":[56],"making":[57],"it":[58],"difficult":[59],"aggregate":[61],"data.":[62],"RESULTS:":[63],"We":[64],"created":[65],"a":[66,77,105],"flexible":[67],"software":[68],"tool":[69],"that":[70,126],"allows":[71],"annotation":[73,87],"samples":[75],"using":[76],"controlled":[78],"vocabulary,":[79],"report":[81],"on":[82],"its":[83],"use":[84],"the":[86,94],"over":[89],"12,500":[90],"samples.":[91],"CONCLUSION:":[92],"While":[93],"amount":[95],"is":[98,109],"very":[99],"large":[100,121],"seemingly":[102],"poorly":[103],"annotated,":[104],"lot":[106],"information":[108],"still":[110],"within":[111],"reach.":[112],"Consistent":[113],"tool-based":[114],"re-annotation":[115],"enables":[116],"many":[117],"new":[118],"possibilities":[119],"scale":[122],"interpretation":[123],"analyses":[125],"would":[127],"otherwise":[128],"impossible.":[130]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
