{"id":"https://openalex.org/W1990747676","doi":"https://doi.org/10.1186/1471-2105-10-s8-s3","title":"Improved mutation tagging with gene identifiers applied to membrane protein stability prediction","display_name":"Improved mutation tagging with gene identifiers applied to membrane protein stability prediction","publication_year":2009,"publication_date":"2009-08-01","ids":{"openalex":"https://openalex.org/W1990747676","doi":"https://doi.org/10.1186/1471-2105-10-s8-s3","mag":"1990747676","pmid":"https://pubmed.ncbi.nlm.nih.gov/19758467"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s8-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s8-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S8-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S8-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046047290","display_name":"Rainer Winnenburg","orcid":"https://orcid.org/0000-0002-2770-2809"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rainer Winnenburg","raw_affiliation_strings":["Biotechnology Center, Technische Universit\u00e4t Dresden, Tatzberg, Germany. rainer.winnenburg@biotec.tu-dresden.de","Biotechnology Center, Technische Universit\u00e4t Dresden, Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, Technische Universit\u00e4t Dresden, Tatzberg, Germany. rainer.winnenburg@biotec.tu-dresden.de","institution_ids":["https://openalex.org/I78650965"]},{"raw_affiliation_string":"Biotechnology Center, Technische Universit\u00e4t Dresden, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078605382","display_name":"Conrad Plake","orcid":null},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Conrad Plake","raw_affiliation_strings":["Biotechnology Center, Technische Universit\u00e4t Dresden, Tatzberg 47-49, Dresden, 01307, Germany","Biotechnology Center, Technische Universit\u00e4t Dresden, Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, Technische Universit\u00e4t Dresden, Tatzberg 47-49, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I78650965"]},{"raw_affiliation_string":"Biotechnology Center, Technische Universit\u00e4t Dresden, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016411406","display_name":"Michael Schroeder","orcid":"https://orcid.org/0000-0003-2848-6949"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Michael Schroeder","raw_affiliation_strings":["Biotechnology Center, Technische Universit\u00e4t Dresden, Tatzberg 47-49, Dresden, 01307, Germany","Biotechnology Center, Technische Universit\u00e4t Dresden, Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, Technische Universit\u00e4t Dresden, Tatzberg 47-49, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I78650965"]},{"raw_affiliation_string":"Biotechnology Center, Technische Universit\u00e4t Dresden, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5016411406"],"corresponding_institution_ids":["https://openalex.org/I78650965"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.2151,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.77400842,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"10","issue":"S8","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.4422999918460846,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.4422999918460846,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.1459999978542328,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.11240000277757645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7760317325592041},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.6235570907592773},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5456377863883972},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5423934459686279},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.538841962814331},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.5324040055274963},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.4613260328769684},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.42082783579826355},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3824835419654846},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3714049160480499},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3645930886268616},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29349446296691895}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7760317325592041},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.6235570907592773},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5456377863883972},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5423934459686279},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.538841962814331},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.5324040055274963},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.4613260328769684},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42082783579826355},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3824835419654846},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3714049160480499},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3645930886268616},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29349446296691895},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-s8-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s8-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S8-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19758467","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19758467","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2745585","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2745585","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:qucosa:de:qucosa:28888","is_oa":true,"landing_page_url":"http://tud.qucosa.de/id/qucosa%3A28888","pdf_url":null,"source":{"id":"https://openalex.org/S4377196435","display_name":"Qucosa (Saxon State and University Library Dresden)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I3132420320","host_organization_name":"SLUB Dresden","host_organization_lineage":["https://openalex.org/I3132420320"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 2009, 10(Suppl 8):S3, ISSN 1471-2105","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s8-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s8-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S8-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.7400000095367432}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321613","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1990747676.pdf","grobid_xml":"https://content.openalex.org/works/W1990747676.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W149962513","https://openalex.org/W1975498453","https://openalex.org/W1978034623","https://openalex.org/W1978661319","https://openalex.org/W1978719997","https://openalex.org/W1990196784","https://openalex.org/W1994306321","https://openalex.org/W2005058680","https://openalex.org/W2008100404","https://openalex.org/W2012480989","https://openalex.org/W2018740767","https://openalex.org/W2031950862","https://openalex.org/W2037176298","https://openalex.org/W2044958450","https://openalex.org/W2059044388","https://openalex.org/W2067620347","https://openalex.org/W2067721032","https://openalex.org/W2073110681","https://openalex.org/W2074133193","https://openalex.org/W2094591616","https://openalex.org/W2099369363","https://openalex.org/W2101265630","https://openalex.org/W2103017472","https://openalex.org/W2104261859","https://openalex.org/W2119279196","https://openalex.org/W2119412782","https://openalex.org/W2120681671","https://openalex.org/W2121570534","https://openalex.org/W2122732537","https://openalex.org/W2127230943","https://openalex.org/W2129420975","https://openalex.org/W2130930065","https://openalex.org/W2131234009","https://openalex.org/W2131285447","https://openalex.org/W2132773777","https://openalex.org/W2132784310","https://openalex.org/W2133683801","https://openalex.org/W2137027832","https://openalex.org/W2140519398","https://openalex.org/W2144949988","https://openalex.org/W2153127576","https://openalex.org/W2156443053","https://openalex.org/W2159165136","https://openalex.org/W2159482845","https://openalex.org/W2162388472","https://openalex.org/W2163821187","https://openalex.org/W2168091548","https://openalex.org/W2460720353","https://openalex.org/W2607436248","https://openalex.org/W2977854026","https://openalex.org/W4233523656","https://openalex.org/W4388367258"],"related_works":["https://openalex.org/W3181892255","https://openalex.org/W3132544722","https://openalex.org/W4232154957","https://openalex.org/W4292058683","https://openalex.org/W4307362031","https://openalex.org/W4389222350","https://openalex.org/W4376646754","https://openalex.org/W2022209941","https://openalex.org/W4205671017","https://openalex.org/W4375844720"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"automated":[2],"retrieval":[3,49,63,206],"and":[4,17,22,43,94,161,192],"integration":[5],"of":[6,58,87,144,164,207,216,220,243],"information":[7,118,130,229],"about":[8],"protein":[9,46,208,236],"point":[10,47],"mutations":[11,73,160,191,209],"in":[12,34,91,120,147,170,181,195],"combination":[13],"with":[14,183],"structure,":[15],"domain":[16],"interaction":[18],"data":[19,36],"from":[20,110,131,210,230],"literature":[21],"databases":[23],"promises":[24],"to":[25,30,71,74,112,133],"be":[26,233],"a":[27,41,66,79,135,188,201,244],"valuable":[28],"approach":[29,203],"study":[31],"structure-function":[32],"relationships":[33],"biomedical":[35],"sets.":[37],"RESULTS:":[38],"We":[39,199,222],"developed":[40],"rule-":[42],"regular":[44],"expression-based":[45],"mutation":[48,62,117,129],"pipeline":[50],"for":[51,60,84,141,204,213,235],"PubMed":[52,211],"abstracts,":[53],"which":[54,165],"shows":[55],"an":[56],"F-measure":[57,114],"87%":[59],"the":[61,85,92,121,142,171,184,205,241],"task":[64],"on":[65,98,240],"benchmark":[67],"dataset.":[68],"In":[69,176],"order":[70],"link":[72],"their":[75],"proteins,":[76],"we":[77,103,127,155],"utilize":[78,128],"named":[80],"entity":[81],"recognition":[82,108],"algorithm":[83],"identification":[86],"gene":[88,107],"names":[89],"co-occurring":[90],"abstract,":[93],"establish":[95],"links":[96],"based":[97,139],"sequence":[99],"checks.":[100],"Vice":[101],"versa,":[102],"could":[104],"show":[105],"that":[106],"improved":[109],"77%":[111],"91%":[113],"when":[115],"considering":[116],"given":[119],"text.":[122],"To":[123],"demonstrate":[124,224],"practical":[125],"relevance,":[126],"text":[132,231],"evaluate":[134],"novel":[136,245],"solvation":[137],"energy":[138,246],"model":[140,185],"prediction":[143],"stabilizing":[145],"regions":[146],"membrane":[148,196],"proteins.":[149,197],"For":[150],"five":[151],"G":[152],"protein-coupled":[153],"receptors":[154],"identified":[156],"35":[157],"relevant":[158],"single":[159],"associated":[162],"phenotypes,":[163],"none":[166],"had":[167],"been":[168],"annotated":[169],"UniProt":[172],"or":[173,218],"PDB":[174],"database.":[175],"71%":[177],"reported":[178],"phenotypes":[179],"were":[180],"compliance":[182],"predictions,":[186],"supporting":[187],"relation":[189],"between":[190],"stability":[193,238],"issues":[194],"CONCLUSION:":[198],"present":[200],"reliable":[202],"abstracts":[212],"any":[214],"set":[215],"genes":[217],"proteins":[219],"interest.":[221],"further":[223],"how":[225],"amino":[226],"acid":[227],"substitution":[228],"can":[232],"utilized":[234],"structure":[237],"studies":[239],"basis":[242],"model.":[247]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
