{"id":"https://openalex.org/W2021064407","doi":"https://doi.org/10.1186/1471-2105-10-s8-s1","title":"Extraction of human kinase mutations from literature, databases and genotyping studies","display_name":"Extraction of human kinase mutations from literature, databases and genotyping studies","publication_year":2009,"publication_date":"2009-08-01","ids":{"openalex":"https://openalex.org/W2021064407","doi":"https://doi.org/10.1186/1471-2105-10-s8-s1","mag":"2021064407","pmid":"https://pubmed.ncbi.nlm.nih.gov/19758464"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s8-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s8-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S8-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S8-S1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007203127","display_name":"Martin Krallinger","orcid":"https://orcid.org/0000-0002-2646-8782"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Martin Krallinger","raw_affiliation_strings":["Spanish National Cancer Research Centre, Madrid, Spain. mkrallinger@cnio.es","Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Spanish National Cancer Research Centre, Madrid, Spain. mkrallinger@cnio.es","institution_ids":["https://openalex.org/I4210089594"]},{"raw_affiliation_string":"Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070612908","display_name":"Jos\u00e9 M. G. Izarzugaza","orcid":"https://orcid.org/0000-0003-1754-5122"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jose MG Izarzugaza","raw_affiliation_strings":["Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044768193","display_name":"Carlos Gerardo Rodriguez-Penagos","orcid":"https://orcid.org/0000-0001-8744-0380"},"institutions":[{"id":"https://openalex.org/I4210147025","display_name":"Barcelona Media","ror":"https://ror.org/047yj9455","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210147025"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Rodriguez-Penagos","raw_affiliation_strings":["Barcelona Media, Centre d'Innovaci\u00f3, Av. Diagonal 177, Barcelona, Spain","Barcelona Media, Centre d'Innovaci\u00f3, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Barcelona Media, Centre d'Innovaci\u00f3, Av. Diagonal 177, Barcelona, Spain","institution_ids":["https://openalex.org/I4210147025"]},{"raw_affiliation_string":"Barcelona Media, Centre d'Innovaci\u00f3, Barcelona, Spain","institution_ids":["https://openalex.org/I4210147025"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5007203127"],"corresponding_institution_ids":["https://openalex.org/I4210089594"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.0685,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.91651443,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"10","issue":"S8","first_page":"S1","last_page":"S1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6169405579566956},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5901985168457031},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5883450508117676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5200238227844238},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4821314811706543},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4668928384780884},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.44146794080734253},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4244648814201355},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3710269331932068},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3453223705291748},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.22274327278137207}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6169405579566956},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5901985168457031},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5883450508117676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5200238227844238},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4821314811706543},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4668928384780884},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.44146794080734253},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4244648814201355},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3710269331932068},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3453223705291748},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.22274327278137207},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066246","descriptor_name":"ErbB Receptors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D066246","descriptor_name":"ErbB Receptors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D066246","descriptor_name":"ErbB Receptors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-10-s8-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s8-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S8-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19758464","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19758464","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2745582","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2745582","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s8-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s8-s1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S8-S1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6700000166893005,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2021064407.pdf","grobid_xml":"https://content.openalex.org/works/W2021064407.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W102875785","https://openalex.org/W1540550673","https://openalex.org/W1971220772","https://openalex.org/W1978661319","https://openalex.org/W1992945955","https://openalex.org/W1994031793","https://openalex.org/W2000025256","https://openalex.org/W2005058680","https://openalex.org/W2015631955","https://openalex.org/W2018740767","https://openalex.org/W2023568503","https://openalex.org/W2030205108","https://openalex.org/W2034137005","https://openalex.org/W2038735546","https://openalex.org/W2041476397","https://openalex.org/W2044958450","https://openalex.org/W2045389157","https://openalex.org/W2048501271","https://openalex.org/W2059044388","https://openalex.org/W2067620347","https://openalex.org/W2074133193","https://openalex.org/W2083731894","https://openalex.org/W2086204383","https://openalex.org/W2094685513","https://openalex.org/W2106647330","https://openalex.org/W2108287705","https://openalex.org/W2120627772","https://openalex.org/W2120681671","https://openalex.org/W2127230943","https://openalex.org/W2129113459","https://openalex.org/W2130479394","https://openalex.org/W2131285447","https://openalex.org/W2132066963","https://openalex.org/W2132122858","https://openalex.org/W2133354975","https://openalex.org/W2133683801","https://openalex.org/W2137297899","https://openalex.org/W2141885858","https://openalex.org/W2158714788","https://openalex.org/W2161879730","https://openalex.org/W2162629891","https://openalex.org/W4238448376","https://openalex.org/W4240237951"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"Using":[0],"the":[1,41,66,83,101],"proposed":[2],"residue":[3],"disambiguation":[4],"and":[5,16,109],"classification":[6],"approach,":[7],"we":[8],"were":[9],"able":[10,61],"to":[11,54,62,106],"differentiate":[12],"between":[13],"natural":[14],"variant":[15],"mutagenesis":[17],"types":[18],"of":[19,24,37,79,82,100,113],"mutations":[20,38,64,86,90,103],"with":[21,46],"an":[22],"accuracy":[23],"93.88.":[25],"The":[26],"resulting":[27],"system":[28,59],"is":[29,60],"useful":[30],"for":[31],"constructing":[32],"a":[33,80],"Gold":[34],"Standard":[35],"set":[36],"extracted":[39,85,102],"from":[40,65,91],"literature":[42,67,84],"by":[43],"human":[44],"experts":[45],"minimal":[47],"manual":[48,77],"curation":[49],"effort,":[50],"providing":[51],"direct":[52],"pointers":[53],"relevant":[55],"evidence":[56],"sentences.":[57],"Our":[58],"recover":[63],"that":[68,95],"are":[69],"not":[70,116],"present":[71],"in":[72,120],"state-of-the-art":[73],"databases.":[74,121],"Human":[75],"expert":[76],"validation":[78],"subset":[81],"conducted":[87],"on":[88],"100":[89],"PubMed":[92],"abstracts":[93],"highlights":[94],"almost":[96],"three":[97],"quarters":[98],"(72%)":[99],"turned":[104],"out":[105],"be":[107],"correct,":[108],"more":[110],"than":[111],"half":[112],"these":[114],"had":[115],"been":[117],"previously":[118],"annotated":[119]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}
