{"id":"https://openalex.org/W2013067928","doi":"https://doi.org/10.1186/1471-2105-10-s6-s3","title":"Databases of homologous gene families for comparative genomics","display_name":"Databases of homologous gene families for comparative genomics","publication_year":2009,"publication_date":"2009-06-01","ids":{"openalex":"https://openalex.org/W2013067928","doi":"https://doi.org/10.1186/1471-2105-10-s6-s3","mag":"2013067928","pmid":"https://pubmed.ncbi.nlm.nih.gov/19534752"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s6-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s6-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S6-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S6-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005165880","display_name":"Simon Penel","orcid":"https://orcid.org/0000-0003-1550-5477"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Simon Penel","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie Evolutive, CNRS, Universit\u00e9 Claude Bernard - Lyon 1, 43 bd, du 11 Novembre 1918, 69622 Villeurbanne Cedex, France. penel@biomserv.univ-lyon1.fr","Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie Evolutive, CNRS, Universit\u00e9 Claude Bernard - Lyon 1, 43 bd, du 11 Novembre 1918, 69622 Villeurbanne Cedex, France. penel@biomserv.univ-lyon1.fr","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011002626","display_name":"Anne-Muriel Arigon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne-Muriel Arigon","raw_affiliation_strings":["Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier, 161 rue Ada, 34392, Montpellier, France","Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier, 161 rue Ada, 34392, Montpellier, France","institution_ids":["https://openalex.org/I4210101743"]},{"raw_affiliation_string":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier, Montpellier, France","institution_ids":["https://openalex.org/I4210101743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034589995","display_name":"Jean-Fran\u00e7ois Dufayard","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Fran\u00e7ois Dufayard","raw_affiliation_strings":["Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier, 161 rue Ada, 34392, Montpellier, France","Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier, 161 rue Ada, 34392, Montpellier, France","institution_ids":["https://openalex.org/I4210101743"]},{"raw_affiliation_string":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier, Montpellier, France","institution_ids":["https://openalex.org/I4210101743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074046774","display_name":"Anne-Sophie Sertier","orcid":"https://orcid.org/0000-0001-7417-081X"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne-Sophie Sertier","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011691995","display_name":"Vincent Daubin","orcid":"https://orcid.org/0000-0001-8269-9430"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Daubin","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036099891","display_name":"Laurent Duret","orcid":"https://orcid.org/0000-0003-2836-3463"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Duret","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052681801","display_name":"Manolo Gouy","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Manolo Gouy","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013133004","display_name":"Guy Perri\u00e8re","orcid":"https://orcid.org/0000-0002-6850-6265"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Guy Perri\u00e8re","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, 43 bd. du 11 Novembre 1918, 69622, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, CNRS, Universit\u00e9 Claude Bernard \u2013 Lyon 1, Villeurbanne Cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5013133004"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":7.7093,"has_fulltext":true,"cited_by_count":175,"citation_normalized_percentile":{"value":0.97724021,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"10","issue":"S6","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.7001000046730042,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.7001000046730042,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.24529999494552612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.01600000075995922,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6694433689117432},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6666224598884583},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6227990388870239},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6053789854049683},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5793980956077576},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.5471287965774536},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5318113565444946},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4360715448856354},{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.4352666139602661},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1227666437625885}],"concepts":[{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6694433689117432},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6666224598884583},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6227990388870239},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6053789854049683},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5793980956077576},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5471287965774536},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5318113565444946},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4360715448856354},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.4352666139602661},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1227666437625885}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-s6-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s6-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S6-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19534752","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19534752","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2697650","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2697650","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:lirmm-00400099v1","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-00400099","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2009, 10 (Suppl.6) :S3, pp.13. &#x27E8;10.1186/1471-2105-10-S6-S3&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s6-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s6-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S6-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G191198116","display_name":null,"funder_award_id":"011-03","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320335860","display_name":"Institut National de Physique Nucl\u00e9aire et de Physique des Particules","ror":"https://ror.org/03fd77x13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2013067928.pdf","grobid_xml":"https://content.openalex.org/works/W2013067928.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W83855287","https://openalex.org/W1502061430","https://openalex.org/W1513332069","https://openalex.org/W1519266993","https://openalex.org/W1575504122","https://openalex.org/W1799812931","https://openalex.org/W1878730940","https://openalex.org/W1963957860","https://openalex.org/W1966786019","https://openalex.org/W1969761972","https://openalex.org/W1977027195","https://openalex.org/W1993470051","https://openalex.org/W1995249986","https://openalex.org/W2002527203","https://openalex.org/W2003087810","https://openalex.org/W2008856488","https://openalex.org/W2017026835","https://openalex.org/W2017519756","https://openalex.org/W2027031393","https://openalex.org/W2029833898","https://openalex.org/W2030750720","https://openalex.org/W2031708534","https://openalex.org/W2032344982","https://openalex.org/W2049089966","https://openalex.org/W2052743506","https://openalex.org/W2057081312","https://openalex.org/W2065172786","https://openalex.org/W2074426357","https://openalex.org/W2095321122","https://openalex.org/W2096778187","https://openalex.org/W2098448352","https://openalex.org/W2103546861","https://openalex.org/W2106882534","https://openalex.org/W2110380130","https://openalex.org/W2114355733","https://openalex.org/W2118579925","https://openalex.org/W2120864016","https://openalex.org/W2121564430","https://openalex.org/W2136904768","https://openalex.org/W2138952930","https://openalex.org/W2142045367","https://openalex.org/W2143210482","https://openalex.org/W2148047088","https://openalex.org/W2149057166","https://openalex.org/W2155606054","https://openalex.org/W2158714788","https://openalex.org/W2159620702","https://openalex.org/W2159957100","https://openalex.org/W2160690190","https://openalex.org/W2161062388","https://openalex.org/W2169898794","https://openalex.org/W2243973145","https://openalex.org/W2268652757","https://openalex.org/W3199943451","https://openalex.org/W4206724286","https://openalex.org/W4207034695","https://openalex.org/W4211000692","https://openalex.org/W4212865600","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2414506155","https://openalex.org/W1565527690","https://openalex.org/W2752117239","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W2170130581","https://openalex.org/W4318240630","https://openalex.org/W2353729507","https://openalex.org/W2560359598","https://openalex.org/W3023271652"],"abstract_inverted_index":{"BACKGROUND:":[0],"Comparative":[1],"genomics":[2],"is":[3,106,145,155,166],"a":[4,100,112,172,177],"central":[5],"step":[6],"in":[7,22,136],"many":[8],"sequence":[9,55],"analysis":[10],"studies,":[11],"from":[12,142,160,220],"gene":[13,36,83],"annotation":[14],"and":[15,42,54,88,92,126,153,176,212],"the":[16,25,31,66,131,164,207,221],"identification":[17],"of":[18,27,65,96,104,198],"new":[19],"functional":[20],"regions":[21],"genomes,":[23],"to":[24,99,148,157,163,186,195,210],"study":[26],"evolutionary":[28],"processes":[29],"at":[30,227],"molecular":[32],"level":[33],"(speciation,":[34],"single":[35],"or":[37,218],"whole":[38],"genome":[39],"duplications,":[40],"etc.)":[41],"phylogenetics.":[43],"In":[44],"that":[45],"context,":[46],"databases":[47,118,129,165],"providing":[48],"users":[49],"high":[50],"quality":[51],"homologous":[52],"families":[53],"alignments":[56,86],"as":[57,59,204,206],"well":[58,205],"phylogenetic":[60,89],"trees":[61,90],"based":[62,189],"on":[63,111],"state":[64],"art":[67],"algorithms":[68],"are":[69],"becoming":[70],"indispensable.":[71],"METHODS:":[72],"We":[73],"developed":[74,120],"an":[75],"automated":[76],"procedure":[77,98],"allowing":[78],"massive":[79],"all-against-all":[80],"similarity":[81],"searches,":[82],"clustering,":[84],"multiple":[85],"computation,":[87],"construction":[91],"reconciliation.":[93],"The":[94,181,201],"application":[95],"this":[97,122],"very":[101],"large":[102,113],"set":[103],"sequences":[105,141],"possible":[107],"through":[108,168],"parallel":[109],"computing":[110],"computer":[114],"cluster.":[115],"RESULTS:":[116],"Three":[117],"were":[119],"using":[121],"procedure:":[123],"HOVERGEN,":[124],"HOGENOM":[125,144],"HOMOLENS.":[127],"These":[128],"share":[130],"same":[132],"architecture":[133],"but":[134],"differ":[135],"their":[137],"content.":[138],"HOVERGEN":[139],"contains":[140],"vertebrates,":[143],"mainly":[146],"devoted":[147,156],"completely":[149],"sequenced":[150],"microbial":[151],"organisms,":[152],"HOMOLENS":[154],"metazoan":[158],"genomes":[159],"Ensembl.":[161],"Access":[162],"provided":[167],"Web":[169],"query":[170,213],"forms,":[171],"general":[173],"retrieval":[174],"system":[175],"client-server":[178],"graphical":[179],"interface.":[180],"later":[182],"can":[183,215],"be":[184,216],"used":[185,217],"perform":[187],"tree-pattern":[188],"searches":[190],"allowing,":[191],"among":[192],"other":[193],"uses,":[194],"retrieve":[196],"sets":[197],"orthologous":[199],"genes.":[200],"three":[202],"databases,":[203],"software":[208],"required":[209],"build":[211],"them,":[214],"downloaded":[219],"PBIL":[222],"(P\u00f4le":[223],"Bioinformatique":[224],"Lyonnais)":[225],"site":[226],"http://pbil.univ-lyon1.fr/.":[228]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":20},{"year":2012,"cited_by_count":21}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
