{"id":"https://openalex.org/W2127507437","doi":"https://doi.org/10.1186/1471-2105-10-s5-s2","title":"Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data","display_name":"Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data","publication_year":2009,"publication_date":"2009-05-01","ids":{"openalex":"https://openalex.org/W2127507437","doi":"https://doi.org/10.1186/1471-2105-10-s5-s2","mag":"2127507437","pmid":"https://pubmed.ncbi.nlm.nih.gov/19426459"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S5-S2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022101817","display_name":"Tim Beck","orcid":"https://orcid.org/0000-0002-0292-7972"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Tim Beck","raw_affiliation_strings":["MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK. t.beck@har.mrc.ac.uk","MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK. t.beck@har.mrc.ac.uk","institution_ids":["https://openalex.org/I4210086857"]},{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103569446","display_name":"Hugh W. Morgan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hugh Morgan","raw_affiliation_strings":["MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","institution_ids":["https://openalex.org/I4210086857"]},{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101657519","display_name":"Andrew Blake","orcid":"https://orcid.org/0000-0002-8154-6253"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Blake","raw_affiliation_strings":["MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","institution_ids":["https://openalex.org/I4210086857"]},{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106733432","display_name":"Sara Wells","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sara Wells","raw_affiliation_strings":["MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","institution_ids":["https://openalex.org/I4210086857"]},{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030731998","display_name":"John M. Hancock","orcid":"https://orcid.org/0000-0003-2991-2217"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John M Hancock","raw_affiliation_strings":["MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","institution_ids":["https://openalex.org/I4210086857"]},{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084604490","display_name":"Ann\u2010Marie Mallon","orcid":"https://orcid.org/0000-0003-4047-4019"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ann-Marie Mallon","raw_affiliation_strings":["MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK","institution_ids":["https://openalex.org/I4210086857"]},{"raw_affiliation_string":"MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, UK","institution_ids":["https://openalex.org/I4210086857"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022101817"],"corresponding_institution_ids":["https://openalex.org/I4210086857"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":3.1479,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.92406742,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10","issue":"S5","first_page":"S2","last_page":"S2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12281","display_name":"Animal testing and alternatives","score":0.0020000000949949026,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5818080902099609},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5377734899520874},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.523820698261261},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5161267518997192},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.48503655195236206},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.42878058552742004},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3994382321834564},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37164247035980225},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33553943037986755},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25017231702804565},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15626513957977295},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13534215092658997},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.12752506136894226},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.08420580625534058},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07533881068229675}],"concepts":[{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5818080902099609},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5377734899520874},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.523820698261261},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5161267518997192},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.48503655195236206},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.42878058552742004},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3994382321834564},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37164247035980225},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33553943037986755},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25017231702804565},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15626513957977295},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13534215092658997},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.12752506136894226},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.08420580625534058},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07533881068229675}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19426459","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19426459","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:1440624","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC2679402","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2679402","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2679402","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G75398875","display_name":null,"funder_award_id":"LSHG-CT-2006-037188","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127507437.pdf","grobid_xml":"https://content.openalex.org/works/W2127507437.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W76145344","https://openalex.org/W1994902893","https://openalex.org/W2033377040","https://openalex.org/W2040597914","https://openalex.org/W2050554833","https://openalex.org/W2061561206","https://openalex.org/W2074984352","https://openalex.org/W2081724586","https://openalex.org/W2096704019","https://openalex.org/W2103017472","https://openalex.org/W2117062422","https://openalex.org/W2124991490","https://openalex.org/W2126434293","https://openalex.org/W2136514583","https://openalex.org/W2137419788","https://openalex.org/W2148032748","https://openalex.org/W2158568548","https://openalex.org/W2160587950","https://openalex.org/W2163685645"],"related_works":["https://openalex.org/W1840542775","https://openalex.org/W3012838233","https://openalex.org/W4252510819","https://openalex.org/W2416830231","https://openalex.org/W2330446075","https://openalex.org/W3003578468","https://openalex.org/W2336657400","https://openalex.org/W1483913375","https://openalex.org/W2088351705","https://openalex.org/W179926425"],"abstract_inverted_index":{"BACKGROUND:":[0],"Large-scale":[1],"international":[2],"projects":[3],"are":[4,222,266],"underway":[5],"to":[6,15,28,82,160,181,234,250,268,329,353],"generate":[7,132],"collections":[8],"of":[9,33,79,107,135,143,146,149,178,186,200,211,220,227,286,299,318,323],"knockout":[10],"mouse":[11,136],"mutants":[12],"and":[13,31,111,154,208,261,276,292,326,346],"subsequently":[14],"perform":[16],"high":[17],"throughput":[18],"phenotype":[19,35,66,137,163,278],"assessments,":[20],"raising":[21],"new":[22],"challenges":[23],"for":[24,205],"computational":[25],"researchers":[26],"due":[27],"the":[29,34,102,112,144,162,179,184,190,196,201,209,225,235,253,256,262,284,316,327,331,341,344],"complexity":[30],"scale":[32],"data.":[36],"Phenotypes":[37],"can":[38,280],"be":[39,281],"described":[40],"using":[41,56,74,195,230,333],"ontologies":[42,314],"in":[43,321],"two":[44],"differing":[45],"methodologies.":[46],"Traditionally":[47],"an":[48,88,91],"individual":[49,192],"phenotypic":[50,85,117,290,356],"character":[51,86],"has":[52],"either":[53],"been":[54,294,351],"defined":[55],"a":[57,63,71,77,84,141,147,170,175,355],"single":[58,247],"compound":[59,248,335],"term,":[60],"originating":[61],"from":[62,76],"species-specific":[64],"dedicated":[65,103],"ontology,":[67],"or":[68],"alternatively":[69],"by":[70,189,242,297],"combinatorial":[72,113,345],"annotation,":[73],"concepts":[75],"range":[78],"disparate":[80],"ontologies,":[81],"define":[83,183],"as":[87,140],"entity":[89],"with":[90,246,313],"associated":[92],"quality":[93],"(EQ).":[94],"Both":[95],"methods":[96],"have":[97,122,293,349],"their":[98],"merits,":[99],"which":[100],"include":[101],"approach":[104,114,125],"allowing":[105],"use":[106,285],"community":[108],"standard":[109],"terminology,":[110],"facilitating":[115],"cross-species":[116],"statement":[118],"comparisons.":[119],"Previously":[120],"databases":[121,279],"favoured":[123],"one":[124],"over":[126],"another.":[127],"The":[128,217,304],"EUMODIC":[129],"project":[130],"will":[131,155],"large":[133],"amounts":[134],"data,":[138],"generated":[139,188,204],"result":[142],"execution":[145],"set":[148],"Standard":[150],"Operating":[151],"Procedures":[152],"(SOPs)":[153],"implement":[156],"both":[157,350],"ontological":[158],"approaches":[159,348],"capture":[161],"data":[164,187,203,228,240],"generated.":[165],"RESULTS:":[166],"For":[167],"all":[168],"SOPs":[169],"four-tier":[171],"annotation":[172,194,199,210],"is":[173],"made:":[174],"high-level":[176],"description":[177],"SOP,":[180],"broadly":[182],"type":[185],"SOP;":[191],"parameter":[193,236],"EQ":[197,263,302],"model;":[198],"qualitative":[202,218,319],"each":[206],"mouse;":[207],"mutant":[212],"lines":[213],"after":[214],"statistical":[215],"analysis.":[216],"assessments":[219],"phenodeviance":[221],"made":[223],"at":[224],"point":[226],"entry,":[229],"child":[231],"PATO":[232,264,324],"qualities":[233,325],"quality.":[237],"To":[238],"facilitate":[239],"querying":[241,270],"scientists":[243,310],"more":[244],"familiar":[245],"terms":[249,322],"describe":[251,307],"phenotypes,":[252],"mappings":[254],"between":[255],"Mammalian":[257],"Phenotype":[258],"(MP)":[259],"ontology":[260],"model":[265],"exploited":[267],"allow":[269],"via":[271],"MP":[272,336],"terms.":[273,337],"CONCLUSION:":[274],"Well-annotated":[275],"comparable":[277,289],"achieved":[282],"through":[283,315],"ontologically":[287],"derived":[288],"statements":[291],"implemented":[295,352],"here":[296],"means":[298],"OBO":[300],"compatible":[301],"annotations.":[303],"implementation":[305],"we":[306],"also":[308],"sees":[309],"working":[311],"seamlessly":[312],"assessment":[317],"phenotypes":[320],"ability":[328],"query":[330],"database":[332],"community-accepted":[334],"This":[338],"work":[339],"represents":[340],"first":[342],"time":[343],"single-dedicated":[347],"annotate":[354],"dataset.":[357]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
