{"id":"https://openalex.org/W2165481219","doi":"https://doi.org/10.1186/1471-2105-10-s12-s2","title":"The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections","display_name":"The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections","publication_year":2009,"publication_date":"2009-10-01","ids":{"openalex":"https://openalex.org/W2165481219","doi":"https://doi.org/10.1186/1471-2105-10-s12-s2","mag":"2165481219","pmid":"https://pubmed.ncbi.nlm.nih.gov/19828078"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s12-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s12-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S12-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S12-S2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026770450","display_name":"Ivan Merelli","orcid":"https://orcid.org/0000-0003-3587-3680"},"institutions":[{"id":"https://openalex.org/I4210136872","display_name":"Tecnologie Avanzate (Italy)","ror":"https://ror.org/04kevy945","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210136872"]},{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Ivan Merelli","raw_affiliation_strings":["Istituto Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Via Fratelli Cervi 93, Segrate (MI), Italy. ivan.merelli@itb.cnr.it","Istituto Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Via F.lli Cervi 93, Segrate, MI, 20090, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Via Fratelli Cervi 93, Segrate (MI), Italy. ivan.merelli@itb.cnr.it","institution_ids":["https://openalex.org/I4210136872","https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Istituto Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Via F.lli Cervi 93, Segrate, MI, 20090, Italy","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046326452","display_name":"Andrea Caprera","orcid":null},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Caprera","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein \u2013 Localit\u00e0 Cascina Codazza, 26900, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein \u2013 Localit\u00e0 Cascina Codazza, 26900, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036123607","display_name":"Alessandra Stella","orcid":"https://orcid.org/0000-0003-2850-3964"},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandra Stella","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein \u2013 Localit\u00e0 Cascina Codazza, 26900, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein \u2013 Localit\u00e0 Cascina Codazza, 26900, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028665360","display_name":"Marcello Del Corvo","orcid":"https://orcid.org/0000-0002-8039-4155"},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marcello Del Corvo","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein \u2013 Localit\u00e0 Cascina Codazza, 26900, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein \u2013 Localit\u00e0 Cascina Codazza, 26900, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088629765","display_name":"Luciano Milanesi","orcid":"https://orcid.org/0000-0002-1201-3939"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Luciano Milanesi","raw_affiliation_strings":["Istituto Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Via F.lli Cervi 93, Segrate, MI, 20090, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto Tecnologie Biomediche \u2013 Consiglio Nazionale delle Ricerche, Via F.lli Cervi 93, Segrate, MI, 20090, Italy","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042603393","display_name":"Barbara Lazzari","orcid":"https://orcid.org/0000-0002-9558-914X"},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Barbara Lazzari","raw_affiliation_strings":["Parco Tecnologico Padano, Via Einstein \u2013 Localit\u00e0 Cascina Codazza, 26900, Lodi, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parco Tecnologico Padano, Via Einstein \u2013 Localit\u00e0 Cascina Codazza, 26900, Lodi, Italy","institution_ids":["https://openalex.org/I2799613648"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5026770450","https://openalex.org/A5088629765"],"corresponding_institution_ids":["https://openalex.org/I4210136872","https://openalex.org/I4210154278"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15732964,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"10","issue":"S12","first_page":"S2","last_page":"S2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.527899980545044,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.527899980545044,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.3896999955177307,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.03790000081062317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6498128175735474},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.6414708495140076},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.58624666929245},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5652164816856384},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47347915172576904},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.4369291663169861},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4328770041465759},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3613132834434509},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3246137499809265},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.25237610936164856},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2501315176486969},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24341565370559692},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1539875864982605},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10586872696876526}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6498128175735474},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.6414708495140076},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.58624666929245},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5652164816856384},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47347915172576904},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.4369291663169861},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4328770041465759},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3613132834434509},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3246137499809265},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.25237610936164856},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2501315176486969},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24341565370559692},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1539875864982605},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10586872696876526},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-s12-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s12-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S12-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19828078","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19828078","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:85c3d3e756c74ad88c4bd31c0714d282","is_oa":false,"landing_page_url":"https://doaj.org/article/85c3d3e756c74ad88c4bd31c0714d282","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss Suppl 12, p S2 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2762067","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2762067","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s12-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s12-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S12-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165481219.pdf","grobid_xml":"https://content.openalex.org/works/W2165481219.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2041956242","https://openalex.org/W2055043387","https://openalex.org/W2103017472","https://openalex.org/W2336303174","https://openalex.org/W2500529989","https://openalex.org/W2782267736"],"related_works":["https://openalex.org/W2331989206","https://openalex.org/W2008612003","https://openalex.org/W3173828731","https://openalex.org/W45658120","https://openalex.org/W4205178530","https://openalex.org/W613088223","https://openalex.org/W2739025131","https://openalex.org/W2606876474","https://openalex.org/W1974405519","https://openalex.org/W4287121746"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,126,152,280,325],"NCBI":[2],"dbEST":[3],"currently":[4,297,327],"contains":[5],"more":[6],"than":[7],"eight":[8],"million":[9],"human":[10,308],"Expressed":[11],"Sequenced":[12],"Tags":[13],"(ESTs).":[14],"This":[15],"wide":[16],"collection":[17],"represents":[18],"an":[19,283],"important":[20],"source":[21],"of":[22,77,114,134,160,168,179,199,218,221,315,321,357],"information":[23,89],"for":[24,112,214],"gene":[25,54,67],"expression":[26,55,115,291],"studies,":[27],"provided":[28],"it":[29],"can":[30,40,144,275,348],"be":[31,41,145,277,349],"inspected":[32],"according":[33],"to":[34,50,58,74,87,164,187,254,288,295,352,362],"biologically":[35],"relevant":[36],"criteria.":[37],"EST":[38,79,92,104,161,226,290,309],"data":[39,189,260],"browsed":[42,146],"using":[43],"different":[44,263],"dedicated":[45],"web":[46,110,249],"resources,":[47],"which":[48,183],"allow":[49],"investigate":[51],"library":[52],"specific":[53],"levels":[56,116,292],"and":[57,122,240,258,285,341],"make":[59],"comparisons":[60],"among":[61,117,271],"libraries,":[62,334,354],"highlighting":[63],"significant":[64,266],"differences":[65,267],"in":[66,81,94,136,201,223,231,243,268,318],"expression.":[68],"Nonetheless,":[69],"no":[70],"tool":[71,153],"is":[72,154,184,360],"available":[73],"examine":[75],"distributions":[76,198],"quantitative":[78],"collections":[80],"Gene":[82],"Ontology":[83,105],"(GO)":[84],"categories,":[85],"nor":[86],"retrieve":[88,257],"concerning":[90],"library-dependent":[91,129],"involvement":[93],"metabolic":[95,224],"pathways.":[96,225],"In":[97],"this":[98,171],"work":[99],"we":[100],"present":[101],"the":[102,132,137,165,177,194,202,219,252,262,306,319,345,355],"Human":[103],"Explorer":[106],"(HEOE)":[107],"http://www.itb.cnr.it/ptp/human_est_explorer,":[108],"a":[109,215,232,244,312,336],"facility":[111],"comparison":[113],"libraries":[118,222,274],"from":[119,261,331],"several":[120],"healthy":[121,340],"diseased":[123],"tissues.":[124,343],"RESULTS:":[125],"HEOE":[127,281,326],"provides":[128,282],"statistics":[130],"on":[131,156,193,237,305,339],"distribution":[133],"sequences":[135],"GO":[138,149,203,269],"Direct":[139],"Acyclic":[140],"Graph":[141,204],"(DAG)":[142],"that":[143,235],"at":[147],"each":[148],"hierarchical":[150],"level.":[151],"based":[155],"large-scale":[157,322],"BLAST":[158,172,303],"annotation":[159],"sequences.":[162],"Due":[163],"huge":[166],"number":[167,356],"input":[169],"sequences,":[170],"analysis":[173,330,346],"was":[174,211,311],"performed":[175],"with":[176,293],"aid":[178],"grid":[180,316],"computing":[181],"technology,":[182],"particularly":[185],"suitable":[186,313],"address":[188],"parallel":[190],"task.":[191],"Relying":[192],"achieved":[195],"annotation,":[196],"library-specific":[197],"ESTs":[200],"were":[205,229],"inferred.":[206],"A":[207,247],"pathway-based":[208],"search":[209],"interface":[210,250],"also":[212,276],"implemented,":[213],"quick":[216],"evaluation":[217],"representation":[220],"processing":[227],"steps":[228],"integrated":[230],"semi-automatic":[233],"procedure":[234,347],"relies":[236],"Perl":[238],"scripts":[239],"stores":[241],"results":[242],"MySQL":[245],"database.":[246],"PHP-based":[248],"offers":[251],"possibility":[253],"simultaneously":[255],"visualize,":[256],"compare":[259],"libraries.":[264],"Statistically":[265],"categories":[270],"user":[272],"selected":[273],"computed.":[278],"CONCLUSION:":[279],"alternative":[284],"complementary":[286],"way":[287],"inspect":[289],"respect":[294],"approaches":[296],"offered":[298],"by":[299],"other":[300,353],"resources.":[301],"Furthermore,":[302],"computation":[304],"whole":[307],"dataset":[310],"test":[314],"scalability":[317],"context":[320],"bioinformatics":[323],"analysis.":[324],"comprises":[328],"sequence":[329],"70":[332],"non-normalized":[333],"representing":[335],"comprehensive":[337],"overview":[338],"unhealthy":[342],"As":[344],"easily":[350],"applied":[351],"represented":[358],"tissues":[359],"intended":[361],"increase.":[363]},"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
