{"id":"https://openalex.org/W2166817550","doi":"https://doi.org/10.1186/1471-2105-10-s12-s17","title":"Protopia: a protein-protein interaction tool","display_name":"Protopia: a protein-protein interaction tool","publication_year":2009,"publication_date":"2009-10-01","ids":{"openalex":"https://openalex.org/W2166817550","doi":"https://doi.org/10.1186/1471-2105-10-s12-s17","mag":"2166817550","pmid":"https://pubmed.ncbi.nlm.nih.gov/19828077"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s12-s17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s12-s17","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S12-S17","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S12-S17","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024851557","display_name":"Alejandro Real-Chicharro","orcid":null},"institutions":[{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210161579","display_name":"Instituto de Investigaci\u00f3n de Enfermedades Raras","ror":"https://ror.org/05mwdqq98","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210161579","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Alejandro Real-Chicharro","raw_affiliation_strings":["University of Malaga and CIBER de Enfermedades Raras, Department of Molecular Biology and Biochemistry, Faculty of Sciences, Instituto de Salud Carlos III, Spain. areal@lcc.uma.es","University of Malaga and \"CIBER de Enfermedades Raras, Instituto de Salud Carlos III\" (unit 741), Department of Molecular Biology and Biochemistry. Faculty of Sciences, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Malaga and CIBER de Enfermedades Raras, Department of Molecular Biology and Biochemistry, Faculty of Sciences, Instituto de Salud Carlos III, Spain. areal@lcc.uma.es","institution_ids":["https://openalex.org/I4210161579","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"University of Malaga and \"CIBER de Enfermedades Raras, Instituto de Salud Carlos III\" (unit 741), Department of Molecular Biology and Biochemistry. Faculty of Sciences, Spain","institution_ids":["https://openalex.org/I4210115082","https://openalex.org/I2801357902","https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085686600","display_name":"I. Ruiz-Mostazo","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Iv\u00e1n Ruiz-Mostazo","raw_affiliation_strings":["University of Malaga, Computer Languages and Computing Science Department, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Malaga, Computer Languages and Computing Science Department, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038234325","display_name":"Ismael Navas\u2010Delgado","orcid":"https://orcid.org/0000-0001-7819-5416"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ismael Navas-Delgado","raw_affiliation_strings":["University of Malaga, Computer Languages and Computing Science Department, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Malaga, Computer Languages and Computing Science Department, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026734910","display_name":"Amine Kerzazi","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Amine Kerzazi","raw_affiliation_strings":["University of Malaga, Computer Languages and Computing Science Department, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Malaga, Computer Languages and Computing Science Department, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085719521","display_name":"Othmane Chniber","orcid":null},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Othmane Chniber","raw_affiliation_strings":["University of Malaga, Computer Languages and Computing Science Department, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Malaga, Computer Languages and Computing Science Department, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089157845","display_name":"Francisca S\u00e1nchez\u2010Jim\u00e9nez","orcid":"https://orcid.org/0000-0002-4958-6060"},"institutions":[{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisca S\u00e1nchez-Jim\u00e9nez","raw_affiliation_strings":["University of Malaga and \"CIBER de Enfermedades Raras, Instituto de Salud Carlos III\" (unit 741), Department of Molecular Biology and Biochemistry. Faculty of Sciences, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Malaga and \"CIBER de Enfermedades Raras, Instituto de Salud Carlos III\" (unit 741), Department of Molecular Biology and Biochemistry. Faculty of Sciences, Spain","institution_ids":["https://openalex.org/I4210115082","https://openalex.org/I2801357902","https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033418778","display_name":"Miguel \u00c1ngel Medina","orcid":"https://orcid.org/0000-0001-7275-6462"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel \u00c1ngel Medina","raw_affiliation_strings":["University of Malaga and \"CIBER de Enfermedades Raras, Instituto de Salud Carlos III\" (unit 741), Department of Molecular Biology and Biochemistry. Faculty of Sciences, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Malaga and \"CIBER de Enfermedades Raras, Instituto de Salud Carlos III\" (unit 741), Department of Molecular Biology and Biochemistry. Faculty of Sciences, Spain","institution_ids":["https://openalex.org/I4210115082","https://openalex.org/I2801357902","https://openalex.org/I82767444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009495520","display_name":"Jos\u00e9 F. Aldana\u2010Montes","orcid":"https://orcid.org/0000-0002-2673-9474"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 F Aldana-Montes","raw_affiliation_strings":["University of Malaga, Computer Languages and Computing Science Department, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Malaga, Computer Languages and Computing Science Department, Spain","institution_ids":["https://openalex.org/I82767444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5024851557"],"corresponding_institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210161579","https://openalex.org/I82767444"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4054,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.64585913,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"S12","first_page":"S17","last_page":"S17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8774999976158142,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8774999976158142,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.052799999713897705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.01080000028014183,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7944875955581665},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.7496491074562073},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7151070237159729},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5495634078979492},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5474513173103333},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.45870670676231384},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3396357297897339},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3267378807067871},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22686445713043213},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17762982845306396}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7944875955581665},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.7496491074562073},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7151070237159729},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5495634078979492},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5474513173103333},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.45870670676231384},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3396357297897339},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3267378807067871},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22686445713043213},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17762982845306396},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-10-s12-s17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s12-s17","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S12-S17","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19828077","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19828077","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2762066","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2762066","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s12-s17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s12-s17","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S12-S17","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320326754","display_name":"Junta de Andaluc\u00eda","ror":"https://ror.org/01jem9c82"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166817550.pdf","grobid_xml":"https://content.openalex.org/works/W2166817550.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W59166222","https://openalex.org/W1606194845","https://openalex.org/W1977116339","https://openalex.org/W2012159565","https://openalex.org/W2044514479","https://openalex.org/W2055718828","https://openalex.org/W2060460012","https://openalex.org/W2065795346","https://openalex.org/W2083543804","https://openalex.org/W2094475562","https://openalex.org/W2101330776","https://openalex.org/W2103017472","https://openalex.org/W2113041803","https://openalex.org/W2113654464","https://openalex.org/W2116087472","https://openalex.org/W2118128448","https://openalex.org/W2128517432","https://openalex.org/W2130863229","https://openalex.org/W2134672568","https://openalex.org/W2137450588","https://openalex.org/W2139483589","https://openalex.org/W2139665091","https://openalex.org/W2139685618","https://openalex.org/W2146016446","https://openalex.org/W2147449506","https://openalex.org/W2150908245","https://openalex.org/W2155320925","https://openalex.org/W2155723007","https://openalex.org/W2159675211","https://openalex.org/W2165674132","https://openalex.org/W2166898290","https://openalex.org/W2169408159","https://openalex.org/W4245145908"],"related_works":["https://openalex.org/W2307569040","https://openalex.org/W2541393756","https://openalex.org/W2060096282","https://openalex.org/W2131941936","https://openalex.org/W2385643360","https://openalex.org/W2739872940","https://openalex.org/W115596161","https://openalex.org/W2167730203","https://openalex.org/W1983206747","https://openalex.org/W4239016173"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein-protein":[1],"interactions":[2,52],"can":[3,107,117,173],"be":[4,108,118,174],"considered":[5],"the":[6,70,80,85,134,147,152,165],"basic":[7],"skeleton":[8],"for":[9,48,69,138,198],"living":[10],"organism":[11],"self-organization":[12],"and":[13,23,30,50,93,95,106,120,145,155,176,183,193],"homeostasis.":[14],"Impressive":[15],"quantities":[16],"of":[17,46,62,66,72,88],"experimental":[18],"data":[19,74],"are":[20,26,97,159,162,195],"being":[21],"obtained":[22],"computational":[24],"tools":[25,182],"essential":[27],"to":[28,31,189],"integrate":[29],"organize":[32],"this":[33,191],"information.":[34],"This":[35],"paper":[36],"presents":[37],"Protopia,":[38],"a":[39,44,60,63,111,114],"biological":[40,73,100],"tool":[41,78,143],"that":[42,171],"offers":[43],"way":[45],"searching":[47],"proteins":[49],"their":[51],"in":[53,151],"different":[54,81],"Protein":[55],"Interaction":[56],"Web":[57],"Databases,":[58],"as":[59,110,123],"part":[61],"multidisciplinary":[64],"initiative":[65],"our":[67],"institution":[68],"integration":[71],"http://asp.uma.es.":[75],"RESULTS:":[76],"The":[77,142,185],"accesses":[79],"Databases":[82],"(at":[83],"present,":[84],"free":[86],"version":[87],"Transfac,":[89],"DIP,":[90],"Hprd,":[91],"Int-Act":[92],"iHop),":[94],"results":[96],"expressed":[98],"with":[99,164],"protein":[101],"names":[102],"or":[103,113,201],"databases":[104,129],"codes":[105,136],"depicted":[109],"vector":[112],"matrix.":[115],"They":[116],"represented":[119],"handled":[121],"interactively":[122],"an":[124],"organic":[125],"graph.":[126],"Comparison":[127],"among":[128,157],"is":[130],"carried":[131],"out":[132],"using":[133],"Uniprot":[135],"annotated":[137],"each":[139],"protein.":[140],"CONCLUSION:":[141],"locates":[144],"integrates":[146],"current":[148],"information":[149],"stored":[150],"aforementioned":[153],"databases,":[154],"redundancies":[156],"them":[158],"detected.":[160],"Results":[161],"compatible":[163],"most":[166],"important":[167],"network":[168],"analysers,":[169],"so":[170],"they":[172,194],"compared":[175],"analysed":[177],"by":[178],"other":[179],"world-wide":[180],"known":[181],"platforms.":[184],"visualization":[186],"possibilities":[187],"help":[188],"attain":[190],"goal":[192],"especially":[196],"interesting":[197],"handling":[199],"multiple-step":[200],"complex":[202],"networks.":[203]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
