{"id":"https://openalex.org/W2149473031","doi":"https://doi.org/10.1186/1471-2105-10-s10-s7","title":"GoWeb: a semantic search engine for the life science web","display_name":"GoWeb: a semantic search engine for the life science web","publication_year":2009,"publication_date":"2009-10-01","ids":{"openalex":"https://openalex.org/W2149473031","doi":"https://doi.org/10.1186/1471-2105-10-s10-s7","mag":"2149473031","pmid":"https://pubmed.ncbi.nlm.nih.gov/19796404"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s10-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s10-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S10-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S10-S7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018344062","display_name":"Heiko Dietze","orcid":"https://orcid.org/0000-0003-0234-1688"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heiko Dietze","raw_affiliation_strings":["Biotechnology Center (BIOTEC), Technische Universit\u00e4t Dresden, 01062, Dresden, Germany. heiko.dietze@biotec.tu-dresden.de","Biotechnology Center (BIOTEC), Technische Universit\u00e4t Dresden, 01062, Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center (BIOTEC), Technische Universit\u00e4t Dresden, 01062, Dresden, Germany. heiko.dietze@biotec.tu-dresden.de","institution_ids":["https://openalex.org/I78650965"]},{"raw_affiliation_string":"Biotechnology Center (BIOTEC), Technische Universit\u00e4t Dresden, 01062, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016411406","display_name":"Michael Schroeder","orcid":"https://orcid.org/0000-0003-2848-6949"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Schroeder","raw_affiliation_strings":["Biotechnology Center (BIOTEC), Technische Universit\u00e4t Dresden, 01062, Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center (BIOTEC), Technische Universit\u00e4t Dresden, 01062, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.0125,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.91683344,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10","issue":"S10","first_page":"S7","last_page":"S7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.004399999976158142,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7983726263046265},{"id":"https://openalex.org/keywords/semantic-search","display_name":"Semantic search","score":0.7976220846176147},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7306526303291321},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.646605372428894},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6257535219192505},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.5669190287590027},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.5176209211349487},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5168464779853821},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.46789777278900146},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.44987738132476807},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.4177474081516266},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4090569019317627}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7983726263046265},{"id":"https://openalex.org/C166423231","wikidata":"https://www.wikidata.org/wiki/Q1891170","display_name":"Semantic search","level":3,"score":0.7976220846176147},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7306526303291321},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.646605372428894},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6257535219192505},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.5669190287590027},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.5176209211349487},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5168464779853821},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.46789777278900146},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.44987738132476807},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.4177474081516266},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4090569019317627},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-10-s10-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s10-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S10-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19796404","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19796404","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2755828","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2755828","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s10-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s10-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S10-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149473031.pdf","grobid_xml":"https://content.openalex.org/works/W2149473031.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W24657566","https://openalex.org/W143172208","https://openalex.org/W151117666","https://openalex.org/W1502950242","https://openalex.org/W1559492731","https://openalex.org/W1623698862","https://openalex.org/W1628475528","https://openalex.org/W1978799369","https://openalex.org/W1979263599","https://openalex.org/W1983668891","https://openalex.org/W2006942491","https://openalex.org/W2024592281","https://openalex.org/W2031614194","https://openalex.org/W2032850556","https://openalex.org/W2032898343","https://openalex.org/W2052522161","https://openalex.org/W2053673723","https://openalex.org/W2056119436","https://openalex.org/W2056340438","https://openalex.org/W2094728533","https://openalex.org/W2098478473","https://openalex.org/W2099271226","https://openalex.org/W2103017472","https://openalex.org/W2107151632","https://openalex.org/W2112236650","https://openalex.org/W2132784310","https://openalex.org/W2151592910","https://openalex.org/W2159335058","https://openalex.org/W2165366194","https://openalex.org/W2259172389","https://openalex.org/W2265991260","https://openalex.org/W2611071287","https://openalex.org/W2611471614","https://openalex.org/W2793292424","https://openalex.org/W2917293077","https://openalex.org/W4239696231","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2031284285","https://openalex.org/W2348459908","https://openalex.org/W2365664923","https://openalex.org/W1573400317","https://openalex.org/W2888269900","https://openalex.org/W2103341238","https://openalex.org/W24629104","https://openalex.org/W146038348","https://openalex.org/W2093676590","https://openalex.org/W1985466117"],"abstract_inverted_index":{"BACKGROUND:":[0],"Current":[1,23],"search":[2,14,59,178],"engines":[3],"are":[4],"keyword-based.":[5],"Semantic":[6],"technologies":[7],"promise":[8],"a":[9,50,167,184],"next":[10],"generation":[11],"of":[12,38,79,116,170,175],"semantic":[13],"engines,":[15],"which":[16,42,54],"will":[17],"be":[18],"able":[19],"to":[20,30,64,163],"answer":[21],"questions.":[22],"approaches":[24],"either":[25],"apply":[26],"natural":[27],"language":[28],"processing":[29],"unstructured":[31],"text":[32],"or":[33],"they":[34,43],"assume":[35],"the":[36,100,117,156,191],"existence":[37],"structured":[39],"statements":[40],"over":[41],"can":[44],"reason.":[45],"RESULTS:":[46],"Here,":[47],"we":[48],"introduce":[49],"third":[51,148],"approach,":[52],"GoWeb,":[53],"combines":[55],"classical":[56,176],"keyword-based":[57],"Web":[58,177],"with":[60,110,133,179],"text-mining":[61,180],"and":[62,69,83,87,89,92,105,130,160,181],"ontologies":[63,182],"navigate":[65],"large":[66],"results":[67],"sets":[68],"facilitate":[70],"question":[71],"answering.":[72],"We":[73],"evaluate":[74],"GoWeb":[75,113,135,165,194],"on":[76,81,85,90,99,126,152],"three":[77],"benchmarks":[78],"questions":[80,154,189],"genes":[82],"functions,":[84],"symptoms":[86,132],"diseases,":[88],"proteins":[91,162],"diseases.":[93,134,164],"The":[94,121,147],"first":[95,185],"benchmark":[96,123,149],"is":[97,124,150,183,195],"based":[98,125,151],"BioCreAtivE":[101],"1":[102],"Task":[103],"2":[104],"links":[106,131,161],"457":[107],"gene":[108],"names":[109],"1352":[111],"functions.":[112],"finds":[114],"58%":[115],"functional":[118],"GeneOntology":[119],"annotations.":[120],"second":[122],"26":[127],"case":[128],"reports":[129],"achieves":[136,166],"77%":[137],"success":[138,168],"rate":[139,169],"improving":[140],"an":[141],"existing":[142],"approach":[143],"by":[144],"nearly":[145],"20%.":[146],"28":[153],"in":[155,190],"TREC":[157],"genomics":[158],"challenge":[159],"79%.":[171],"CONCLUSION:":[172],"GoWeb's":[173],"combination":[174],"step":[186],"towards":[187],"answering":[188],"biomedical":[192],"domain.":[193],"online":[196],"at:":[197],"http://www.gopubmed.org/goweb.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
