{"id":"https://openalex.org/W2165685472","doi":"https://doi.org/10.1186/1471-2105-10-s10-s11","title":"BioGateway: a semantic systems biology tool for the life sciences","display_name":"BioGateway: a semantic systems biology tool for the life sciences","publication_year":2009,"publication_date":"2009-10-01","ids":{"openalex":"https://openalex.org/W2165685472","doi":"https://doi.org/10.1186/1471-2105-10-s10-s11","mag":"2165685472","pmid":"https://pubmed.ncbi.nlm.nih.gov/19796395"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s10-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s10-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S10-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S10-S11","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059590876","display_name":"Erick Antezana","orcid":"https://orcid.org/0000-0002-2497-8236"},"institutions":[{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Erick Antezana","raw_affiliation_strings":["Department of Plant Systems Biology, VIB, Gent, Belgium. erick.antezana@gmail.com","Dept of Plant Systems Biology, VIB, Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Systems Biology, VIB, Gent, Belgium. erick.antezana@gmail.com","institution_ids":["https://openalex.org/I4210098178"]},{"raw_affiliation_string":"Dept of Plant Systems Biology, VIB, Gent, Belgium","institution_ids":["https://openalex.org/I4210098178"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083985501","display_name":"Ward Blond\u00e9","orcid":"https://orcid.org/0000-0001-7624-4069"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ward Blond\u00e9","raw_affiliation_strings":["Dept of Applied Mathematics, Biometrics and Process Control, Ghent University, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Applied Mathematics, Biometrics and Process Control, Ghent University, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090216571","display_name":"Mikel Ega\u00f1a Aranguren","orcid":"https://orcid.org/0000-0001-8081-1839"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mikel Ega\u00f1a","raw_affiliation_strings":["School of Computer Science, University of Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037849592","display_name":"Alistair Rutherford","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088452","display_name":"Glasgow Life","ror":"https://ror.org/00655dk85","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210088452"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alistair Rutherford","raw_affiliation_strings":["Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Glasgow, UK","institution_ids":["https://openalex.org/I4210088452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Stevens","raw_affiliation_strings":["School of Computer Science, University of Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012437460","display_name":"Bernard De Baets","orcid":"https://orcid.org/0000-0002-3876-620X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bernard De Baets","raw_affiliation_strings":["Dept of Applied Mathematics, Biometrics and Process Control, Ghent University, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Applied Mathematics, Biometrics and Process Control, Ghent University, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080056836","display_name":"Vladimir Mironov","orcid":"https://orcid.org/0000-0002-9454-5823"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Vladimir Mironov","raw_affiliation_strings":["Dept. of Biology, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Biology, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077915624","display_name":"Martin Kuiper","orcid":"https://orcid.org/0000-0002-1171-9876"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Martin Kuiper","raw_affiliation_strings":["Dept. of Biology, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Biology, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5077915624"],"corresponding_institution_ids":["https://openalex.org/I204778367"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":3.2756,"has_fulltext":true,"cited_by_count":71,"citation_normalized_percentile":{"value":0.92895017,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10","issue":"S10","first_page":"S11","last_page":"S11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9226999878883362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9226999878883362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.032600000500679016,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.00800000037997961,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7354310750961304},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6991232633590698},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.6766660213470459},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.6167385578155518},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.5380403995513916},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.5198010206222534},{"id":"https://openalex.org/keywords/semantic-grid","display_name":"Semantic grid","score":0.5096418857574463},{"id":"https://openalex.org/keywords/semantic-technology","display_name":"Semantic technology","score":0.4984548091888428},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4767478406429291},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.4270459711551666},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42570361495018005},{"id":"https://openalex.org/keywords/semantic-search","display_name":"Semantic search","score":0.424871027469635}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7354310750961304},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6991232633590698},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.6766660213470459},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.6167385578155518},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.5380403995513916},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.5198010206222534},{"id":"https://openalex.org/C103692084","wikidata":"https://www.wikidata.org/wiki/Q1765824","display_name":"Semantic grid","level":3,"score":0.5096418857574463},{"id":"https://openalex.org/C6881194","wikidata":"https://www.wikidata.org/wiki/Q7449091","display_name":"Semantic technology","level":4,"score":0.4984548091888428},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4767478406429291},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.4270459711551666},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42570361495018005},{"id":"https://openalex.org/C166423231","wikidata":"https://www.wikidata.org/wiki/Q1891170","display_name":"Semantic search","level":3,"score":0.424871027469635}],"mesh":[{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-10-s10-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s10-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S10-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19796395","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19796395","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/091d9fd4-81a8-4071-8552-ce97890da245","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/091d9fd4-81a8-4071-8552-ce97890da245","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Antezana, E, Blond\u00e9, W, Ega\u00f1a, M, Rutherford, A, Stevens, R, De Baets, B, Mironov, V & Kuiper, M 2009, 'BioGateway: A semantic systems biology tool for the life sciences', BMC Bioinformatics, vol. 10, no. 10, 1471, pp. S11. https://doi.org/10.1186/1471-2105-10-S10-S11","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:brage.bibsys.no:11250/2384279","is_oa":false,"landing_page_url":"http://hdl.handle.net/11250/2384279","pdf_url":null,"source":{"id":"https://openalex.org/S4306400255","display_name":"BIBSYS Brage (BIBSYS (Norway))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173212132","host_organization_name":"Vilnius University","host_organization_lineage":["https://openalex.org/I173212132"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"10","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2755819","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2755819","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:addi.ehu.eus:10810/69536","is_oa":true,"landing_page_url":"http://hdl.handle.net/10810/69536","pdf_url":null,"source":{"id":"https://openalex.org/S4306401964","display_name":"Communities in ADDI (University of the Basque Country)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169108374","host_organization_name":"University of the Basque Country","host_organization_lineage":["https://openalex.org/I169108374"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:archive.ugent.be:783852","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/783852","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:13838513","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-S10-S11","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s10-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s10-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S10-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320301","display_name":"European Science Foundation","ror":"https://ror.org/04esata81"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165685472.pdf","grobid_xml":"https://content.openalex.org/works/W2165685472.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W124940209","https://openalex.org/W171784999","https://openalex.org/W1481492534","https://openalex.org/W1482585805","https://openalex.org/W1483118642","https://openalex.org/W1577425432","https://openalex.org/W1748928863","https://openalex.org/W1965610986","https://openalex.org/W1968918513","https://openalex.org/W1969271108","https://openalex.org/W1971935411","https://openalex.org/W1972077901","https://openalex.org/W2001758733","https://openalex.org/W2022381538","https://openalex.org/W2045089599","https://openalex.org/W2048786492","https://openalex.org/W2050554833","https://openalex.org/W2087383805","https://openalex.org/W2093410900","https://openalex.org/W2096525273","https://openalex.org/W2096704019","https://openalex.org/W2099218891","https://openalex.org/W2103260426","https://openalex.org/W2104106724","https://openalex.org/W2104989673","https://openalex.org/W2106791611","https://openalex.org/W2106881838","https://openalex.org/W2108177663","https://openalex.org/W2108491719","https://openalex.org/W2111701123","https://openalex.org/W2113142309","https://openalex.org/W2117632114","https://openalex.org/W2120337732","https://openalex.org/W2127789342","https://openalex.org/W2136539307","https://openalex.org/W2137999759","https://openalex.org/W2146827200","https://openalex.org/W2147466021","https://openalex.org/W2160845726","https://openalex.org/W2161062388","https://openalex.org/W2161607637","https://openalex.org/W2165428180","https://openalex.org/W2169049983","https://openalex.org/W2242459625","https://openalex.org/W2526809159","https://openalex.org/W2611302887","https://openalex.org/W2752885492","https://openalex.org/W3004540582","https://openalex.org/W3145128584","https://openalex.org/W4211054902","https://openalex.org/W4241827326"],"related_works":["https://openalex.org/W4229736327","https://openalex.org/W4243025272","https://openalex.org/W2280628760","https://openalex.org/W308193076","https://openalex.org/W2084998560","https://openalex.org/W2387349142","https://openalex.org/W2108020129","https://openalex.org/W146038348","https://openalex.org/W2473959954","https://openalex.org/W1446171314"],"abstract_inverted_index":{"BACKGROUND:":[0],"Life":[1],"scientists":[2],"need":[3],"help":[4],"in":[5,23,150,166,206,247],"coping":[6],"with":[7],"the":[8,35,42,45,77,81,86,90,94,132,159,171,207,213,234,244],"plethora":[9],"of":[10,37,44,80,134,158,173,177,202,215,243],"fast":[11],"growing":[12],"and":[13,64,97,200,236,249],"scattered":[14],"knowledge":[15,19,56,58,62,65],"resources.":[16],"Ideally,":[17],"this":[18],"should":[20],"be":[21,52,164,253],"integrated":[22,72],"a":[24,70,103,115,119,155,174,192,197,216,222,241],"form":[25],"that":[26,33,140,146,161,218],"allows":[27],"them":[28],"to":[29,51,107,124,143,163,181,220,233],"pose":[30],"complex":[31],"questions":[32],"address":[34],"properties":[36],"biological":[38],"systems,":[39],"independently":[40],"from":[41],"origin":[43],"knowledge.":[46],"Semantic":[47,120,178,203,229],"Web":[48,179,204],"technologies":[49,180,205],"prove":[50],"well":[53],"suited":[54],"for":[55,118,190,212,228],"integration,":[57],"production":[59],"(hypothesis":[60],"formulation),":[61],"querying":[63],"maintenance.":[66],"RESULTS:":[67],"We":[68,153,169,210],"implemented":[69],"semantically":[71],"resource":[73],"named":[74],"BioGateway,":[75,136],"comprising":[76],"entire":[78],"set":[79],"OBO":[82],"foundry":[83],"candidate":[84],"ontologies,":[85],"GO":[87],"annotation":[88],"files,":[89],"SWISS-PROT":[91],"protein":[92],"set,":[93],"NCBI":[95],"taxonomy":[96],"several":[98],"in-house":[99],"ontologies.":[100],"BioGateway":[101],"provides":[102],"single":[104],"entry":[105],"point":[106],"query":[108],"these":[109],"resources":[110],"through":[111],"SPARQL.":[112],"It":[113],"constitutes":[114],"key":[116],"component":[117],"Systems":[121,230],"Biology":[122],"approach":[123],"generate":[125],"new":[126],"hypotheses":[127],"concerning":[128],"systems":[129],"properties.":[130],"In":[131],"course":[133],"developing":[135],"we":[137],"faced":[138],"challenges":[139],"are":[141],"common":[142],"other":[144],"projects":[145],"involve":[147],"large":[148],"datasets":[149],"diverse":[151],"representations.":[152],"present":[154],"detailed":[156],"analysis":[157],"obstacles":[160],"had":[162],"overcome":[165],"creating":[167],"BioGateway.":[168],"demonstrate":[170],"potential":[172],"comprehensive":[175],"application":[176,201],"global":[182],"biomedical":[183],"data.":[184],"CONCLUSION:":[185],"The":[186],"time":[187],"is":[188],"ripe":[189],"launching":[191],"community":[193],"effort":[194],"aimed":[195],"at":[196,255],"wider":[198],"acceptance":[199],"life":[208,225],"sciences.":[209],"call":[211],"creation":[214],"forum":[217],"strives":[219],"implement":[221],"truly":[223],"semantic":[224],"science":[226],"foundation":[227],"Biology.":[231],"Access":[232],"system":[235],"supplementary":[237],"information":[238],"(such":[239],"as":[240],"listing":[242],"data":[245],"sources":[246],"RDF,":[248],"sample":[250],"queries)":[251],"can":[252],"found":[254],"http://www.semantic-systems-biology.org/biogateway.":[256]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":8}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
