{"id":"https://openalex.org/W2086788832","doi":"https://doi.org/10.1186/1471-2105-10-s1-s40","title":"Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures","display_name":"Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2086788832","doi":"https://doi.org/10.1186/1471-2105-10-s1-s40","mag":"2086788832","pmid":"https://pubmed.ncbi.nlm.nih.gov/19208142"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-s1-s40","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s1-s40","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S1-S40","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S1-S40","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100857492","display_name":"Weitao Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Weitao Sun","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Las Cruces, 88003, USA. sunwt@tsinghua.edu.cn","Zhou Pei-Yuan Center for Applied Mathematics, Tsinghua University, Beijing, PR China","Department of Computer Science, New Mexico State University, Las Cruces, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, 88003, USA. sunwt@tsinghua.edu.cn","institution_ids":["https://openalex.org/I10052268"]},{"raw_affiliation_string":"Zhou Pei-Yuan Center for Applied Mathematics, Tsinghua University, Beijing, PR China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, USA","institution_ids":["https://openalex.org/I10052268"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049641499","display_name":"Jing He","orcid":"https://orcid.org/0000-0002-7249-4746"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing He","raw_affiliation_strings":["Department of Computer Science, New Mexico State University, Las Cruces, 88003, USA","Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, 88003, USA","institution_ids":["https://openalex.org/I10052268"]},{"raw_affiliation_string":"Department of Computer Science, New Mexico State University, Las Cruces, USA#TAB#","institution_ids":["https://openalex.org/I10052268"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.4677,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.87698646,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"10","issue":"S1","first_page":"S40","last_page":"S40"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.37279999256134033,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.37279999256134033,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.3163999915122986,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.12099999934434891,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.5864793658256531},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.5534336566925049},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.4952451288700104},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.48372700810432434},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.4587107300758362},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4334200322628021},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3886096477508545},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3803848624229431},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.36661964654922485},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35753709077835083},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27719125151634216},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14315307140350342},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.1424335241317749},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13215932250022888},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.12281912565231323},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10227641463279724},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09134873747825623}],"concepts":[{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.5864793658256531},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.5534336566925049},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.4952451288700104},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.48372700810432434},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.4587107300758362},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4334200322628021},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3886096477508545},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3803848624229431},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.36661964654922485},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35753709077835083},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27719125151634216},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14315307140350342},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.1424335241317749},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13215932250022888},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.12281912565231323},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10227641463279724},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09134873747825623},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-10-s1-s40","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s1-s40","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S1-S40","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19208142","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19208142","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2648730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2648730","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-s1-s40","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-s1-s40","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-S1-S40","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.800000011920929}],"awards":[{"id":"https://openalex.org/G4209356199","display_name":"CREST: Center for Research Excellence in Bioinformatics and Computational Biology","funder_award_id":"0420407","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4508212883","display_name":null,"funder_award_id":"HRD-0420407","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320322392","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2086788832.pdf","grobid_xml":"https://content.openalex.org/works/W2086788832.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1550517035","https://openalex.org/W1963844724","https://openalex.org/W1966323820","https://openalex.org/W1974349842","https://openalex.org/W1975017420","https://openalex.org/W2012798337","https://openalex.org/W2024060531","https://openalex.org/W2025042015","https://openalex.org/W2048147356","https://openalex.org/W2067178039","https://openalex.org/W2070524991","https://openalex.org/W2072888035","https://openalex.org/W2074820163","https://openalex.org/W2094869942","https://openalex.org/W2111070241","https://openalex.org/W2114379770","https://openalex.org/W2124927299","https://openalex.org/W2135815512","https://openalex.org/W2142529984","https://openalex.org/W2147791333","https://openalex.org/W2148204968","https://openalex.org/W2149476505","https://openalex.org/W2152086886","https://openalex.org/W2153187042","https://openalex.org/W2154061444","https://openalex.org/W2155089380","https://openalex.org/W2156798505","https://openalex.org/W2171546617","https://openalex.org/W2171700940","https://openalex.org/W2178756744","https://openalex.org/W4242319700"],"related_works":["https://openalex.org/W2078778136","https://openalex.org/W2933325505","https://openalex.org/W2020577335","https://openalex.org/W2386796734","https://openalex.org/W2117934800","https://openalex.org/W2083563479","https://openalex.org/W2472013057","https://openalex.org/W2031291218","https://openalex.org/W2532234348","https://openalex.org/W2385723709"],"abstract_inverted_index":{"BACKGROUND:":[0],"Electron":[1],"cryomicroscopy":[2],"is":[3,58,130,351],"a":[4,91,156,360,365],"fast":[5],"developing":[6],"technique":[7],"aiming":[8],"at":[9],"the":[10,13,38,64,71,80,84,87,116,127,134,139,147,150,160,165,170,175,179,185,190,195,200,207,214,217,221,228,232,241,247,253,258,262,264,269,275,278,281,289,301,311,319,332,339,343,348,356,370],"determination":[11],"of":[12,16,63,70,86,105,138,173,178,220,231,235,252,261,268,277,323,342],"3-dimensional":[14],"structures":[15,163,187,223,267,308,350],"large":[17],"protein":[18,23,65,92,117],"complexes.":[19],"Using":[20],"this":[21,76],"technique,":[22],"density":[24],"maps":[25,107],"can":[26,52,224,271],"be":[27,49,53,225,272],"generated":[28],"with":[29,93],"6":[30],"to":[31,48,68,79,119,142,145,158,293,359],"10":[32],"A":[33,299],"resolution.":[34],"At":[35],"such":[36,42],"resolutions,":[37],"secondary":[39,88,196,222,349],"structure":[40,287,368],"elements":[41],"as":[43],"helices":[44,95],"and":[45,51,83,96,111,122,245,280,297,315,327],"beta-strands":[46],"appear":[47],"skeletons":[50,140,167,270,290],"computationally":[54],"detected.":[55],"However,":[56],"it":[57],"not":[59,131],"known":[60,212],"which":[61,69,106],"segment":[62],"sequence":[66,118,282],"corresponds":[67,141],"skeletons.":[72,125,151,180,371],"The":[73,284],"topology":[74,137,219],"in":[75,133,149,227,331,354],"paper":[77],"refers":[78],"linear":[81],"order":[82],"directionality":[85],"structures.":[89],"For":[90],"N":[94,108,120],"M":[97,112,123],"strands,":[98],"there":[99],"are":[100,211],"(N!2N)(M!2M)":[101],"different":[102],"topologies,":[103],"each":[104,136],"helix":[109,121,166],"segments":[110,114],"strand":[113,124],"on":[115,189],"Since":[126],"backbone":[128,208,259],"position":[129,146],"available":[132],"skeleton,":[135],"additional":[143],"freedom":[144],"atoms":[148],"RESULTS:":[152],"We":[153],"have":[154],"developed":[155],"method":[157,182],"construct":[159],"possible":[161,176,186,237,265,329],"atomic":[162,209,266],"for":[164,213,239,250,288,300,318,369],"by":[168,194,347],"sampling":[169],"solution":[171],"space":[172,358],"all":[174,236,240],"topologies":[177,238],"Our":[181,335],"also":[183],"ranks":[184],"based":[188],"contact":[191,344],"energy":[192,345],"formed":[193,346],"structures,":[197],"rather":[198],"than":[199],"entire":[201],"chain.":[202],"If":[203],"we":[204],"assume":[205],"that":[206,338,363],"positions":[210],"skeletons,":[215,263],"then":[216],"native":[218,294,367],"found":[226],"top":[229,248],"30%":[230],"ranked":[233,310],"list":[234],"30":[242,254],"proteins":[243,321],"tested,":[244],"within":[246],"5%":[249],"most":[251],"proteins.":[255],"Without":[256],"assuming":[257],"location":[260],"constructed":[273,286,307],"using":[274],"axis":[276],"skeleton":[279],"segments.":[283],"best":[285,306],"has":[291],"RMSD":[292],"between":[295],"4":[296],"5":[298],"four":[302,320],"tested":[303],"alpha-proteins.":[304],"These":[305],"were":[309],"17th,":[312],"31st,":[313],"16th":[314],"5th":[316],"respectively":[317],"out":[322],"32066,":[324],"391833,":[325],"98755":[326],"192935":[328],"assignments":[330],"pool.":[333],"CONCLUSION:":[334],"work":[336],"suggested":[337],"direct":[340],"estimation":[341],"quite":[352],"effective":[353],"reducing":[355],"topological":[357],"small":[361],"subset":[362],"includes":[364],"near":[366]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
