{"id":"https://openalex.org/W2071535377","doi":"https://doi.org/10.1186/1471-2105-10-93","title":"New scoring schema for finding motifs in DNA Sequences","display_name":"New scoring schema for finding motifs in DNA Sequences","publication_year":2009,"publication_date":"2009-03-20","ids":{"openalex":"https://openalex.org/W2071535377","doi":"https://doi.org/10.1186/1471-2105-10-93","mag":"2071535377","pmid":"https://pubmed.ncbi.nlm.nih.gov/19302709"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-93","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-93","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-93","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-93","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067478126","display_name":"Fatemeh Zare\u2010Mirakabad","orcid":"https://orcid.org/0000-0003-2849-3778"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Fatemeh Zare-Mirakabad","raw_affiliation_strings":["Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran. zare@ibb.ut.ac.ir","Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran. zare@ibb.ut.ac.ir","institution_ids":["https://openalex.org/I23946033"]},{"raw_affiliation_string":"Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108202514","display_name":"Hayedeh Ahrabian","orcid":null},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Hayedeh Ahrabian","raw_affiliation_strings":["Center of Excellence in Biomathematics, School of Mathematics, Statistics, and Computer Science, University of Tehran, Tehran, Iran,","Center of Excellence in Biomathematics, School of Mathematics, Statistics, and Computer Science, University of Tehran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Center of Excellence in Biomathematics, School of Mathematics, Statistics, and Computer Science, University of Tehran, Tehran, Iran,","institution_ids":["https://openalex.org/I23946033"]},{"raw_affiliation_string":"Center of Excellence in Biomathematics, School of Mathematics, Statistics, and Computer Science, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077907019","display_name":"M. Sadeghi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137727","display_name":"National Institute of Genetic Engineering and Biotechnology","ror":"https://ror.org/03ckh6215","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210137727"]},{"id":"https://openalex.org/I4210146419","display_name":"Institute for Research in Fundamental Sciences","ror":"https://ror.org/04xreqs31","country_code":"IR","type":"facility","lineage":["https://openalex.org/I4210146419"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mehdei Sadeghi","raw_affiliation_strings":["National Institute of Genetic Engineering and Biotechnology, Tehran, Iran and","School of Computer Science, Institute for Studies in Theoretical Physics and Mathematics (IPM), Tehran, Iran","National Institute of Genetic Engineering and Biotechnology, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"National Institute of Genetic Engineering and Biotechnology, Tehran, Iran and","institution_ids":["https://openalex.org/I4210137727"]},{"raw_affiliation_string":"School of Computer Science, Institute for Studies in Theoretical Physics and Mathematics (IPM), Tehran, Iran","institution_ids":["https://openalex.org/I4210146419"]},{"raw_affiliation_string":"National Institute of Genetic Engineering and Biotechnology, Tehran, Iran","institution_ids":["https://openalex.org/I4210137727"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028185671","display_name":"Abbas Nowzari-Dalini","orcid":"https://orcid.org/0000-0003-4598-2645"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Abbas Nowzari-Dalini","raw_affiliation_strings":["Center of Excellence in Biomathematics, School of Mathematics, Statistics, and Computer Science, University of Tehran, Tehran, Iran,","Center of Excellence in Biomathematics, School of Mathematics, Statistics, and Computer Science, University of Tehran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Center of Excellence in Biomathematics, School of Mathematics, Statistics, and Computer Science, University of Tehran, Tehran, Iran,","institution_ids":["https://openalex.org/I23946033"]},{"raw_affiliation_string":"Center of Excellence in Biomathematics, School of Mathematics, Statistics, and Computer Science, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103250852","display_name":"Bahram Goliaei","orcid":"https://orcid.org/0000-0002-4640-9923"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]},{"id":"https://openalex.org/I4210103004","display_name":"Institute of Biochemistry","ror":"https://ror.org/022dvs210","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210103004","https://openalex.org/I7597260"]}],"countries":["HU","IR"],"is_corresponding":false,"raw_author_name":"Bahram Goliaei","raw_affiliation_strings":["Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran,","Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran,","institution_ids":["https://openalex.org/I4210103004"]},{"raw_affiliation_string":"Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067478126"],"corresponding_institution_ids":["https://openalex.org/I23946033"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6719,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.69321341,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"10","issue":"1","first_page":"93","last_page":"93"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.580553412437439},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5566076636314392},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5488704442977905},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5222933292388916},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.4917290508747101},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4891569912433624},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.47828397154808044},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.44959867000579834},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4193609058856964},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32392770051956177},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3117985725402832},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3092111051082611},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.27130353450775146},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12215474247932434}],"concepts":[{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.580553412437439},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5566076636314392},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5488704442977905},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5222933292388916},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.4917290508747101},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4891569912433624},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.47828397154808044},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.44959867000579834},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4193609058856964},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32392770051956177},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3117985725402832},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3092111051082611},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.27130353450775146},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12215474247932434},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-10-93","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-93","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-93","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19302709","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19302709","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0baa1b836cfd43078f58c6c1cd563f23","is_oa":true,"landing_page_url":"https://doaj.org/article/0baa1b836cfd43078f58c6c1cd563f23","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 93 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2679735","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2679735","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-93","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-93","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-93","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2071535377.pdf","grobid_xml":"https://content.openalex.org/works/W2071535377.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1214546200","https://openalex.org/W1580213736","https://openalex.org/W1872507636","https://openalex.org/W1966448776","https://openalex.org/W1966833356","https://openalex.org/W1981371363","https://openalex.org/W1988393300","https://openalex.org/W1998300401","https://openalex.org/W2003967338","https://openalex.org/W2004232360","https://openalex.org/W2005652623","https://openalex.org/W2013989044","https://openalex.org/W2015622114","https://openalex.org/W2017200304","https://openalex.org/W2026979173","https://openalex.org/W2041726559","https://openalex.org/W2041877620","https://openalex.org/W2054984882","https://openalex.org/W2068140368","https://openalex.org/W2089783852","https://openalex.org/W2090804789","https://openalex.org/W2094036688","https://openalex.org/W2100558818","https://openalex.org/W2101025813","https://openalex.org/W2109745159","https://openalex.org/W2110455321","https://openalex.org/W2132955708","https://openalex.org/W2141408320","https://openalex.org/W2146393977","https://openalex.org/W2158356009","https://openalex.org/W2161600258","https://openalex.org/W2166277117","https://openalex.org/W2166429927","https://openalex.org/W2168157737","https://openalex.org/W2602756222","https://openalex.org/W2913223193","https://openalex.org/W2913766202"],"related_works":["https://openalex.org/W2036927633","https://openalex.org/W2152664145","https://openalex.org/W2153561273","https://openalex.org/W2079197459","https://openalex.org/W2165899269","https://openalex.org/W2236968607","https://openalex.org/W2090848290","https://openalex.org/W2146393977","https://openalex.org/W2617836174","https://openalex.org/W2122429294"],"abstract_inverted_index":{"The":[0],"results":[1],"demonstrate":[2],"that":[3,14,60,67],"the":[4,15,31,36],"new":[5],"approach":[6],"improves":[7],"known":[8],"binding":[9],"site":[10],"discovery":[11],"and":[12,19,25],"show":[13],"joint":[16],"information":[17,21],"content":[18],"mutual":[20],"provide":[22],"a":[23],"better":[24,64],"more":[26],"general":[27],"criterion":[28],"to":[29],"investigate":[30],"relationships":[32],"between":[33],"positions":[34],"in":[35],"TFBS.":[37],"Our":[38],"scoring":[39],"function":[40],"is":[41],"formulated":[42],"by":[43],"simple":[44],"mathematical":[45],"calculations.":[46],"By":[47],"implementing":[48],"our":[49],"method":[50,62],"on":[51],"several":[52],"biological":[53],"data":[54],"sets,":[55],"it":[56],"can":[57],"be":[58],"induced":[59],"this":[61],"performs":[63],"than":[65],"methods":[66],"do":[68],"not":[69],"consider":[70],"dependencies.":[71]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
