{"id":"https://openalex.org/W2014186056","doi":"https://doi.org/10.1186/1471-2105-10-87","title":"Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data","display_name":"Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data","publication_year":2009,"publication_date":"2009-03-17","ids":{"openalex":"https://openalex.org/W2014186056","doi":"https://doi.org/10.1186/1471-2105-10-87","mag":"2014186056","pmid":"https://pubmed.ncbi.nlm.nih.gov/19292916"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-87","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-87","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-87","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-87","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112445699","display_name":"Navdeep Jaitly","orcid":null},"institutions":[{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Navdeep Jaitly","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA 99352, USA. ndjaitly@cs.utoronto.ca","Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA 99352, USA. ndjaitly@cs.utoronto.ca","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022565043","display_name":"Anoop Mayampurath","orcid":"https://orcid.org/0000-0002-3010-6960"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anoop Mayampurath","raw_affiliation_strings":["Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810"]},{"raw_affiliation_string":"Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5097361084","display_name":"Kyle Littlefield","orcid":null},"institutions":[{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Littlefield","raw_affiliation_strings":["Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810"]},{"raw_affiliation_string":"Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA","institution_ids":["https://openalex.org/I2801280572","https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089245822","display_name":"Joshua Adkins","orcid":"https://orcid.org/0000-0003-0399-0700"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua N Adkins","raw_affiliation_strings":["Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","Fundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, USA"],"affiliations":[{"raw_affiliation_string":"Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Fundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018692662","display_name":"Gordon Anderson","orcid":"https://orcid.org/0000-0002-7066-6161"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gordon A Anderson","raw_affiliation_strings":["Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","Fundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, USA"],"affiliations":[{"raw_affiliation_string":"Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Fundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023982706","display_name":"Richard Smith","orcid":"https://orcid.org/0000-0002-2381-2349"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard D Smith","raw_affiliation_strings":["Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","Fundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, USA"],"affiliations":[{"raw_affiliation_string":"Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99352, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Fundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, USA","institution_ids":["https://openalex.org/I142606810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5112445699"],"corresponding_institution_ids":["https://openalex.org/I142606810","https://openalex.org/I2801280572"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":8.5816,"has_fulltext":true,"cited_by_count":219,"citation_normalized_percentile":{"value":0.98446534,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"10","issue":"1","first_page":"87","last_page":"87"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.737535834312439},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7035254240036011},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5714483261108398},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5262659788131714},{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.4879438281059265},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.48388609290122986},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4597691595554352},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4596405327320099},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.44275766611099243},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.41953229904174805},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.41860824823379517},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2612762451171875},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20346274971961975},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11489289999008179}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.737535834312439},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7035254240036011},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5714483261108398},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5262659788131714},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.4879438281059265},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.48388609290122986},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4597691595554352},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4596405327320099},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.44275766611099243},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.41953229904174805},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.41860824823379517},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2612762451171875},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20346274971961975},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11489289999008179}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-10-87","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-87","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-87","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19292916","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19292916","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:utoronto.scholaris.ca:1807/83076","is_oa":true,"landing_page_url":"http://hdl.handle.net/1807/83076","pdf_url":"https://utoronto.scholaris.ca/bitstreams/3c831d3d-30a7-442b-864d-4cfaff252bff/download","source":{"id":"https://openalex.org/S7407055458","display_name":"TSpace","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:982bd185916e4473b331ad999b4dcd36","is_oa":true,"landing_page_url":"https://doaj.org/article/982bd185916e4473b331ad999b4dcd36","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 87 (2009)","raw_type":"article"},{"id":"pmh:oai:localhost:1807/83076","is_oa":false,"landing_page_url":"http://doi.org/10.1186/1471-2105-10-87","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-87","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-87","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-87","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6200000047683716,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338354","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2014186056.pdf","grobid_xml":"https://content.openalex.org/works/W2014186056.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1519955500","https://openalex.org/W1964010911","https://openalex.org/W1973563015","https://openalex.org/W1978769064","https://openalex.org/W1981715798","https://openalex.org/W1990616595","https://openalex.org/W1991165514","https://openalex.org/W2001841288","https://openalex.org/W2018864378","https://openalex.org/W2026465178","https://openalex.org/W2030043624","https://openalex.org/W2044655708","https://openalex.org/W2049948296","https://openalex.org/W2052388444","https://openalex.org/W2058952332","https://openalex.org/W2073155155","https://openalex.org/W2073162961","https://openalex.org/W2073682446","https://openalex.org/W2084151531","https://openalex.org/W2086502504","https://openalex.org/W2095826175","https://openalex.org/W2107231094","https://openalex.org/W2124114991","https://openalex.org/W2149517572","https://openalex.org/W2160933918","https://openalex.org/W2209002777"],"related_works":["https://openalex.org/W2265275674","https://openalex.org/W2084395052","https://openalex.org/W2792375448","https://openalex.org/W3024941504","https://openalex.org/W4394231753","https://openalex.org/W646678958","https://openalex.org/W2390579056","https://openalex.org/W2898899725","https://openalex.org/W4393848201","https://openalex.org/W2893927622"],"abstract_inverted_index":{"Decon2LS":[0,29],"is":[1,30],"an":[2],"efficient":[3],"software":[4],"package":[5],"for":[6],"discovering":[7],"and":[8,27,39,44,55],"visualizing":[9],"features":[10],"in":[11,36],"proteomics":[12,38],"studies":[13],"that":[14],"require":[15],"automated":[16],"interpretation":[17],"of":[18,61],"mass":[19],"spectra.":[20],"Besides":[21],"being":[22],"easy":[23],"to":[24,42,48],"use,":[25],"fast,":[26],"reliable,":[28],"also":[31],"open-source,":[32],"which":[33],"allows":[34],"developers":[35],"the":[37,46],"bioinformatics":[40],"communities":[41],"reuse":[43],"refine":[45],"algorithms":[47],"meet":[49],"individual":[50],"needs.Decon2LS":[51],"source":[52],"code,":[53],"installer,":[54],"tutorials":[56],"may":[57],"be":[58],"downloaded":[59],"free":[60],"charge":[62],"at":[63],"http://http:/ncrr.pnl.gov/software/.":[64]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":19}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}