{"id":"https://openalex.org/W1978480905","doi":"https://doi.org/10.1186/1471-2105-10-54","title":"TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis","display_name":"TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis","publication_year":2009,"publication_date":"2009-02-10","ids":{"openalex":"https://openalex.org/W1978480905","doi":"https://doi.org/10.1186/1471-2105-10-54","mag":"1978480905","pmid":"https://pubmed.ncbi.nlm.nih.gov/19208235"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-10-54","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-54","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-54","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-54","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022252584","display_name":"Andr\u00e9 Fischer","orcid":"https://orcid.org/0000-0002-6386-2324"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Andr\u00e9 Fischer","raw_affiliation_strings":["Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, Regensburg, Germany. andre.fischer@biologie.uni-regensburg.de","Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, Regensburg, Germany. andre.fischer@biologie.uni-regensburg.de","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020445261","display_name":"Nils Enkler","orcid":null},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nils Enkler","raw_affiliation_strings":["Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, 93040, Regensburg, Germany","Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, 93040, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073990551","display_name":"Gerd Neudert","orcid":null},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gerd Neudert","raw_affiliation_strings":["Institut f\u00fcr Pharmazeutische Chemie, Universit\u00e4t Marburg, 35032, Marburg, Germany","Institut f\u00fcr Pharmazeutische Chemie, Universit\u00e4t Marburg, Marburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Pharmazeutische Chemie, Universit\u00e4t Marburg, 35032, Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]},{"raw_affiliation_string":"Institut f\u00fcr Pharmazeutische Chemie, Universit\u00e4t Marburg, Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054154685","display_name":"Marco Bocola","orcid":null},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marco Bocola","raw_affiliation_strings":["Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, 93040, Regensburg, Germany","Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, 93040, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002529505","display_name":"Reinhard Sterner","orcid":"https://orcid.org/0000-0001-8177-8460"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Reinhard Sterner","raw_affiliation_strings":["Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, 93040, Regensburg, Germany","Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, 93040, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002078560","display_name":"Rainer Merkl","orcid":"https://orcid.org/0000-0002-3521-2957"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rainer Merkl","raw_affiliation_strings":["Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, 93040, Regensburg, Germany","Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00e4t Regensburg, 93040, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Institut f\u00fcr Biophysik und Physikalische Biochemie, Universit\u00c4t Regensburg, Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022252584"],"corresponding_institution_ids":["https://openalex.org/I60668342"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0602,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.75831605,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"10","issue":"1","first_page":"54","last_page":"54"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/triosephosphate-isomerase","display_name":"Triosephosphate isomerase","score":0.8099210262298584},{"id":"https://openalex.org/keywords/active-site","display_name":"Active site","score":0.6943209171295166},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5573105812072754},{"id":"https://openalex.org/keywords/protein-design","display_name":"Protein design","score":0.48872900009155273},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.4857788383960724},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.45936790108680725},{"id":"https://openalex.org/keywords/protein-engineering","display_name":"Protein engineering","score":0.43314698338508606},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.41063350439071655},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34851306676864624},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.25451767444610596},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2500685751438141},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23903313279151917},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22271302342414856},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1971556544303894},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19207188487052917}],"concepts":[{"id":"https://openalex.org/C2778727959","wikidata":"https://www.wikidata.org/wiki/Q24777683","display_name":"Triosephosphate isomerase","level":3,"score":0.8099210262298584},{"id":"https://openalex.org/C41183919","wikidata":"https://www.wikidata.org/wiki/Q423026","display_name":"Active site","level":3,"score":0.6943209171295166},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5573105812072754},{"id":"https://openalex.org/C152769699","wikidata":"https://www.wikidata.org/wiki/Q410814","display_name":"Protein design","level":3,"score":0.48872900009155273},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.4857788383960724},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.45936790108680725},{"id":"https://openalex.org/C147816474","wikidata":"https://www.wikidata.org/wiki/Q169525","display_name":"Protein engineering","level":3,"score":0.43314698338508606},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.41063350439071655},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34851306676864624},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.25451767444610596},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2500685751438141},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23903313279151917},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22271302342414856},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1971556544303894},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19207188487052917},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-10-54","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-54","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-54","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19208235","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19208235","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:epub.uni-regensburg.de:10907","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401229","display_name":"University of Regensburg Publication Server (University of Regensburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60668342","host_organization_name":"University of Regensburg","host_organization_lineage":["https://openalex.org/I60668342"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:4c1907179009465799f08d4c1783893d","is_oa":true,"landing_page_url":"https://doaj.org/article/4c1907179009465799f08d4c1783893d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 10, Iss 1, p 54 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2667513","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2667513","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"doi:10.5283/epub.10907","is_oa":true,"landing_page_url":"https://doi.org/10.5283/epub.10907","pdf_url":null,"source":{"id":"https://openalex.org/S4306401229","display_name":"University of Regensburg Publication Server (University of Regensburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60668342","host_organization_name":"University of Regensburg","host_organization_lineage":["https://openalex.org/I60668342"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-10-54","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-10-54","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-10-54","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1270159786","display_name":null,"funder_award_id":"STE 891/4-3","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1978480905.pdf","grobid_xml":"https://content.openalex.org/works/W1978480905.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W95014119","https://openalex.org/W107985703","https://openalex.org/W1509956720","https://openalex.org/W1589812083","https://openalex.org/W1793492141","https://openalex.org/W1965582988","https://openalex.org/W1965596873","https://openalex.org/W1969644422","https://openalex.org/W1982496832","https://openalex.org/W1982792504","https://openalex.org/W1986111972","https://openalex.org/W1987696643","https://openalex.org/W1991300609","https://openalex.org/W1996142946","https://openalex.org/W2001842251","https://openalex.org/W2003356525","https://openalex.org/W2003890287","https://openalex.org/W2015642465","https://openalex.org/W2017668812","https://openalex.org/W2021566131","https://openalex.org/W2024060531","https://openalex.org/W2030461124","https://openalex.org/W2034144975","https://openalex.org/W2039984482","https://openalex.org/W2042694939","https://openalex.org/W2051872583","https://openalex.org/W2055212608","https://openalex.org/W2056073017","https://openalex.org/W2073125464","https://openalex.org/W2078142106","https://openalex.org/W2078362683","https://openalex.org/W2078982942","https://openalex.org/W2079193378","https://openalex.org/W2082260955","https://openalex.org/W2085497102","https://openalex.org/W2089827651","https://openalex.org/W2091307684","https://openalex.org/W2097669648","https://openalex.org/W2102033493","https://openalex.org/W2102245393","https://openalex.org/W2102502076","https://openalex.org/W2102640727","https://openalex.org/W2103994532","https://openalex.org/W2104180764","https://openalex.org/W2126242078","https://openalex.org/W2128653811","https://openalex.org/W2130229682","https://openalex.org/W2130479394","https://openalex.org/W2130956021","https://openalex.org/W2134759124","https://openalex.org/W2135815512","https://openalex.org/W2141885858","https://openalex.org/W2144362290","https://openalex.org/W2145081095","https://openalex.org/W2145440823","https://openalex.org/W2151946950","https://openalex.org/W2152997175","https://openalex.org/W2159848960","https://openalex.org/W2162215949","https://openalex.org/W2164130591","https://openalex.org/W2195878577","https://openalex.org/W2222512263","https://openalex.org/W2915868289","https://openalex.org/W4210400672"],"related_works":["https://openalex.org/W2163081299","https://openalex.org/W2138594732","https://openalex.org/W1973920394","https://openalex.org/W1988880849","https://openalex.org/W2024765299","https://openalex.org/W2554214300","https://openalex.org/W2116266427","https://openalex.org/W2991041010","https://openalex.org/W2003675367","https://openalex.org/W2991203454"],"abstract_inverted_index":{"A":[0],"recapitulation":[1],"test":[2],"on":[3],"native":[4,15],"enzymes":[5],"showed":[6],"that":[7,12,27],"TransCent":[8],"proposes":[9],"active":[10],"sites":[11],"resemble":[13],"the":[14,32],"enzyme":[16],"more":[17],"than":[18],"those":[19],"generated":[20],"by":[21],"RosettaDesign":[22],"alone.":[23],"Additional":[24],"tests":[25],"demonstrated":[26],"each":[28],"module":[29],"contributes":[30],"to":[31],"overall":[33],"performance":[34],"in":[35],"a":[36],"statistically":[37],"significant":[38],"manner.":[39]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
